RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 REM2Q8IYK8 340 aaPredicted RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 METTL27Q8N6F8 245 aaPredicted RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 AMER2Q8N7J2 671 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 TBC1D15Q8TC07 691 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 TIFAQ96CG3 184 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 C11orf84Q9BUA3 381 aaPredicted RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 HDHD5Q9BXW7 423 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 NFKBIZQ9BYH8 718 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ANKRD60Q9BZ19 345 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 CDCP1Q9H5V8 836 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ZNF576Q9H609 170 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 TMEM248Q9NWD8 314 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 Q9Y3F1 56 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 SQORQ9Y6N5 450 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 NPIPA5A0A0B4J1W7 369 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 TCRBV3S1A0A5B6 114 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 FAM183AA6NL82 134 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 NPIPA7E9PJI5 369 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 M0R3H8 397 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 CDRT1O95170 752 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 RASGRP1O95267 797 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 NTN1O95631 604 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 NPIPA8P0DM63 369 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 CST5P28325 142 aaPredicted RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 PTGER3P43115 390 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 MAGEA6P43360 314 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 PSMD8P48556 350 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 AP2S1P53680 142 aaPredicted RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 CDH4P55283 916 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 CLDN2P57739 230 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 RACK1P63244 317 aaKnown RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 PPIGQ13427 754 aaKnown RBP eCLIP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 LPAL2Q16609 132 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ZNF750Q32MQ0 723 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 C9orf64Q5T6V5 341 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 KANK2Q63ZY3 851 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 C22orf42Q6IC83 251 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 NOXRED1Q6NXP6 359 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 PAQR6Q6TCH4 344 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 CCBE1Q6UXH8 406 aaPredicted RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 HSDL2Q6YN16 418 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ANKRD33Q7Z3H0 272 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 IZUMO1Q8IYV9 350 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 CHDHQ8NE62 594 aaPredicted RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 OR6C4Q8NGE1 309 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 OR8K3Q8NH51 312 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ATL1Q8WXF7 558 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 PYURFQ96I23 114 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 UBXN10Q96LJ8 280 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 C17orf62Q9BQA9 187 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 DERL2Q9GZP9 239 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 KAT8Q9H7Z6 458 aaKnown RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 PAQR5Q9NXK6 330 aaPredicted RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 PTGFRNQ9P2B2 879 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 SLC6A14Q9UN76 642 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ERGIC3Q9Y282 383 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 SCN10AQ9Y5Y9 1956 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 MDC1Q14676 2089 aaKnown RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 LOC100509620A0A075B734 347 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 TRBC2A0A5B9 178 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 H0YC42 278 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 E2F3O00716 465 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 PPM1DO15297 605 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 NUPL2O15504 423 aaKnown RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 LEFTY1O75610 366 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 EPHX1P07099 455 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 CDC42P60953 191 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 TRAP1Q12931 704 aaKnown RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 SEMA3BQ13214 749 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 DOC2AQ14183 400 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 HERC3Q15034 1050 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 TEAD2Q15562 447 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ATP6AP1Q15904 470 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 DESI1Q6ICB0 168 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 CD300LGQ6UXG3 332 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 PAMR1Q6UXH9 720 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ALKAL1Q6UXT8 129 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 TMIGD1Q6UXZ0 262 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 CEACAM20Q6UY09 585 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ADGRG6Q86SQ4 1221 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ZFAND4Q86XD8 727 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 RBM45Q8IUH3 476 aaKnown RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 LNX2Q8N448 690 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 KREMEN2Q8NCW0 462 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ZNF583Q96ND8 569 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ASB2Q96Q27 587 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 F2RL3Q96RI0 385 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 NKX3-1Q99801 234 aaPredicted RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 CENPOQ9BU64 300 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ZNF334Q9HCZ1 680 aaPredicted RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ADAP2Q9NPF8 381 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 RPRD1BQ9NQG5 326 aaKnown RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 DPP7Q9UHL4 492 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 NDRG2Q9UN36 371 aaKnown RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 PCDHB8Q9UN66 801 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 PARP14Q460N5 1801 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 TCF20Q9UGU0 1960 aaKnown RBP4.8□□□□□ -1.64
CCDC39-204ENST00000476379 PIKFYVEQ9Y2I7 2098 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 IGF2RP11717 2491 aa4.8□□□□□ -1.64
CCDC39-204ENST00000476379 ATMQ13315 3056 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms