RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 RAB40ALP0C0E4 278 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 CPA3P15088 417 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 F8A1P23610 371 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 HNF4AP41235 474 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 CASP2P42575 452 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 PRKAA2P54646 552 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 SKP1P63208 163 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 MC1RQ01726 317 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 TOR1AIP1Q5JTV8 583 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 ZNF678Q5SXM1 525 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 ABHD13Q7L211 337 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 CCNYL1Q8N7R7 359 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 ARMC2Q8NEN0 867 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 NT5CQ8TCD5 201 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 ZNF483Q8TF39 744 aaPredicted RBP17.18■□□□□ 0.34
CLN3-239ENST00000628023 REPS1Q96D71 796 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 SEC16BQ96JE7 1060 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 FAM111AQ96PZ2 611 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 C1QTNF3Q9BXJ4 246 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 ACTL8Q9H568 366 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 ZNF304Q9HCX3 659 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 ACSS2Q9NR19 701 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 COPG2Q9UBF2 871 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 FARSAQ9Y285 508 aaKnown RBP17.18■□□□□ 0.34
CLN3-239ENST00000628023 PLLPQ9Y342 182 aa17.18■□□□□ 0.34
CLN3-239ENST00000628023 MRPS2Q9Y399 296 aaKnown RBP17.18■□□□□ 0.34
CLN3-239ENST00000628023 BOD1L1Q8NFC6 3051 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 G3V2L1 256 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 OR7A17O14581 309 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 SUV39H1O43463 412 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 CLEC3AO75596 197 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 CLDN9O95484 217 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 OTCP00480 354 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 SERPINA6P08185 405 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 ZNF888P0CJ79 500 aaPredicted RBP17.17■□□□□ 0.34
CLN3-239ENST00000628023 IL1RNP18510 177 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 TSPAN8P19075 237 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 ITGAXP20702 1163 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 IMPDH1P20839 514 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 PTPN4P29074 926 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 HPDP32754 393 aaPredicted RBP17.17■□□□□ 0.34
CLN3-239ENST00000628023 CDH13P55290 713 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 STXBP1P61764 594 aaKnown RBP17.17■□□□□ 0.34
CLN3-239ENST00000628023 RPS18P62269 152 aaKnown RBP17.17■□□□□ 0.34
CLN3-239ENST00000628023 PHEXP78562 749 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 DDX39BQ13838 428 aaKnown RBP17.17■□□□□ 0.34
CLN3-239ENST00000628023 FAM53BQ14153 422 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 HERC3Q15034 1050 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 CFAP157Q5JU67 520 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 OR52B6Q8NGF0 335 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 OR9A4Q8NGU2 314 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 TCP10LQ8TDR4 215 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 TRPC4APQ8TEL6 797 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 FKBP10Q96AY3 582 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 PGM2Q96G03 612 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 CDK15Q96Q40 435 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 TUBD1Q9UJT1 453 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 PCDHGA6Q9Y5G7 932 aa17.17■□□□□ 0.34
CLN3-239ENST00000628023 FER1L5A0AVI2 2057 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 TERTO14746 1132 aaKnown RBP17.16■□□□□ 0.34
CLN3-239ENST00000628023 NSA2O95478 260 aaKnown RBP17.16■□□□□ 0.34
CLN3-239ENST00000628023 CD63P08962 238 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 PRKAR1AP10644 381 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 CREB1P16220 341 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 SERPINB1P30740 379 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 POLE2P56282 527 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 CLCQ05315 142 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 PCDH1Q08174 1060 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 KCNAB2Q13303 367 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 DSG2Q14126 1118 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 CPSF6Q16630 551 aaKnown RBP eCLIP17.16■□□□□ 0.34
CLN3-239ENST00000628023 UNC50Q53HI1 259 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 TTC19Q6DKK2 380 aaPredicted RBP17.16■□□□□ 0.34
CLN3-239ENST00000628023 PRSS41Q7RTY9 318 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 MILR1Q7Z6M3 343 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 ARHGEF39Q8N4T4 335 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 CREB3L4Q8TEY5 395 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 L3HYPDHQ96EM0 354 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 MAGEB10Q96LZ2 347 aaPredicted RBP17.16■□□□□ 0.34
CLN3-239ENST00000628023 TRIM4Q9C037 500 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 ZBTB26Q9HCK0 441 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 TRPC4Q9UBN4 977 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 ZNF490Q9ULM2 529 aaPredicted RBP17.16■□□□□ 0.34
CLN3-239ENST00000628023 STK38LQ9Y2H1 464 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 RNF11Q9Y3C5 154 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 PTRH2Q9Y3E5 179 aaKnown RBP17.16■□□□□ 0.34
CLN3-239ENST00000628023 PCDHGA11Q9Y5H2 935 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 SLC22A7Q9Y694 548 aa17.16■□□□□ 0.34
CLN3-239ENST00000628023 SGK494L7N484 410 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 FOXS1O43638 330 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 CREG1O75629 220 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 KLHL18O94889 574 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 CAPN1P07384 714 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 H2AFXP16104 143 aaPredicted RBP17.15■□□□□ 0.34
CLN3-239ENST00000628023 ALOX12P18054 663 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 FOLR3P41439 243 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 OCA2Q04671 838 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 TGM3Q08188 693 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 ASPHQ12797 758 aa17.15■□□□□ 0.34
CLN3-239ENST00000628023 TRAF3Q13114 568 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms