RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 GSTA2P09210 222 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 RNH1P13489 461 aaKnown RBP13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 CD46P15529 392 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 CASP6P55212 293 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 OR4D2P58180 307 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 RHAGQ02094 409 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 USP10Q14694 798 aaKnown RBP13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 DEFB134Q4QY38 66 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 SFT2D3Q587I9 215 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 LANCL3Q6ZV70 420 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 TMPRSS11BQ86T26 416 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 PDSS2Q86YH6 399 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 KLHDC8AQ8IYD2 350 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 KRT78Q8N1N4 520 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 TMEM178AQ8NBL3 297 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 PYROXD1Q8WU10 500 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 MACROD1Q9BQ69 325 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 PHACTR1Q9C0D0 580 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 SLC6A16Q9GZN6 736 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 NT5DC2Q9H857 520 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 GPAMQ9HCL2 828 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 LANCL2Q9NS86 450 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 WHRNQ9P202 907 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 SLC22A14Q9Y267 594 aa13.58□□□□□ -0.24
HMGCS1-203ENST00000507004 CPAMD8Q8IZJ3 1885 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 SPENQ96T58 3664 aaKnown RBP13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 CHST10O43529 356 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 PRMT3O60678 531 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 STATHP02808 62 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 CELA2AP08217 269 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 RNF224P0DH78 156 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 SAT1P21673 171 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 TDGF1P3P51864 188 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 SLC26A5P58743 744 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 TAS2R39P59534 338 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 ATP6V0D1P61421 351 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 RCN2Q14257 317 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 ZRSR2Q15696 482 aaKnown RBP13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 ZXDCQ2QGD7 858 aaPredicted RBP13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 KRTCAP3Q53RY4 240 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 ZNF766Q5HY98 468 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 HP1BP3Q5SSJ5 553 aaPredicted RBP13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 CATSPEREQ5SY80 951 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 GFRALQ6UXV0 394 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 ANKMY2Q8IV38 441 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 ZBED8Q8IZ13 594 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 UTP15Q8TED0 518 aaKnown RBP13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 FAR2Q96K12 515 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 TAAR6Q96RI8 345 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 TRIM51Q9BSJ1 452 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 NPLQ9BXD5 320 aaPredicted RBP13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 TRIM31Q9BZY9 425 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 DERL2Q9GZP9 239 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 EHD1Q9H4M9 534 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 PRDM9Q9NQV7 894 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 SLC17A6Q9P2U8 582 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 SEC14L3Q9UDX4 400 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 MMACHCQ9Y4U1 282 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 COL12A1Q99715 3063 aa13.57□□□□□ -0.24
HMGCS1-203ENST00000507004 NOTCH2Q04721 2471 aa13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 IGHV3-20A0A0C4DH32 117 aa13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 ZNF888P0CJ79 500 aaPredicted RBP13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 C1GALT1C1LP0DN25 315 aa13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 EFNA3P52797 238 aa13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 CAV1Q03135 178 aa13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 RBBP5Q15291 538 aaKnown RBP13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 TERF2Q15554 542 aa13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 TMEM207Q6UWW9 146 aa13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 BEST3Q8N1M1 668 aa13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 THAP3Q8WTV1 239 aaPredicted RBP13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 GAL3ST3Q96A11 431 aa13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 PTCHD1Q96NR3 888 aa13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 KRT12Q99456 494 aa13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 CPNE1Q99829 537 aa13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 WDR83Q9BRX9 315 aaKnown RBP13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 ERP44Q9BS26 406 aa13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 COPG2Q9UBF2 871 aa13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 MRPS33Q9Y291 106 aaKnown RBP13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 SNX24Q9Y343 169 aa13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 SCN3AQ9NY46 2000 aa13.56□□□□□ -0.24
HMGCS1-203ENST00000507004 NPEPPSL1A6NEC2 478 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 ZNF860A6NHJ4 632 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 CDC7O00311 574 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 CLDN4O14493 209 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 CLEC3AO75596 197 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 WDR47O94967 919 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 CLDN1O95832 211 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 SMIM10L1P0DMW3 83 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 EEF1DP29692 281 aaKnown RBP13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 GP5P40197 560 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 RPL21P46778 160 aaKnown RBP13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 SLC6A12P48065 614 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 TGM3Q08188 693 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 TUBA3CQ13748 450 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 SULT1C3Q6IMI6 304 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 TUBA3EQ6PEY2 450 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 TMIGD1Q6UXZ0 262 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 RPTNQ6XPR3 784 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 RPS19BP1Q86WX3 136 aaKnown RBP13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 CRLF3Q8IUI8 442 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms