RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 ATG13O75143 517 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 WBP4O75554 376 aaKnown RBP11.5□□□□□ -0.57
USP1-201ENST00000339950 POP7O75817 140 aaKnown RBP11.5□□□□□ -0.57
USP1-201ENST00000339950 VNN2O95498 520 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 EPHX1P07099 455 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 SYN1P17600 705 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 XKR7Q5GH72 579 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 MED27Q6P2C8 311 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 CEACAM20Q6UY09 585 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 CCDC149Q6ZUS6 474 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 CHPFQ8IZ52 775 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 AMER2Q8N7J2 671 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 GLB1L3Q8NCI6 653 aaPredicted RBP11.5□□□□□ -0.57
USP1-201ENST00000339950 DPF3Q92784 378 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 MUC13Q9H3R2 512 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 SEMA3GQ9NS98 782 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 KCNK6Q9Y257 313 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 GPR52Q9Y2T5 361 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 FAM92AA1XBS5 289 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 TGM5O43548 720 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 TMCC2O75069 709 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 CCNDBP1O95273 360 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 SDHBP21912 280 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 PSMB5P28074 263 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 KRT20P35900 424 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 SSR2P43308 183 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 TGM4P49221 684 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 MAPK12P53778 367 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 CBLBQ13191 982 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 ADPRMQ3LIE5 342 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 CEP78Q5JTW2 689 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 CAPN13Q6MZZ7 669 aaPredicted RBP11.5□□□□□ -0.57
USP1-201ENST00000339950 ARMC8Q8IUR7 673 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 TCEANCQ8N8B7 351 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 CLIP3Q96DZ5 547 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 CEP295NLQ96MC4 621 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 TBC1D17Q9HA65 648 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 POPDC3Q9HBV1 291 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 KLHL1Q9NR64 748 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 PRKAG2Q9UGJ0 569 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 ITGB1BP2Q9UKP3 347 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 PAPPA2Q9BXP8 1791 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 PIPSLA2A3N6 862 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 FAM220BPB1ANY3 271 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 PCDH17O14917 1159 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 GRM6O15303 877 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 TLL1O43897 1013 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 PRKRAO75569 313 aaKnown RBP11.49□□□□□ -0.57
USP1-201ENST00000339950 ETHE1O95571 254 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 CCT3P49368 545 aaKnown RBP11.49□□□□□ -0.57
USP1-201ENST00000339950 CLDN8P56748 225 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 GCNT6Q5T4J0 391 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 MSRB3Q8IXL7 192 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 OR8J3Q8NGG0 315 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 HDAC2Q92769 488 aaKnown RBP11.49□□□□□ -0.57
USP1-201ENST00000339950 KLF16Q9BXK1 252 aaPredicted RBP11.49□□□□□ -0.57
USP1-201ENST00000339950 CACYBPQ9HB71 228 aaKnown RBP11.49□□□□□ -0.57
USP1-201ENST00000339950 PRELID1Q9Y255 219 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 BOLA1Q9Y3E2 137 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 GPSM3Q9Y4H4 160 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 HCFC2Q9Y5Z7 792 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 CCDC88CQ9P219 2028 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 CPSF4LA6NMK7 179 aaKnown RBP11.49□□□□□ -0.57
USP1-201ENST00000339950 MYL12BO14950 172 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 IL3P08700 152 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 ACP5P13686 325 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 CR2P20023 1033 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 SEC13P55735 322 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 CDC42P60953 191 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 CDK6Q00534 326 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 PTSQ03393 145 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 TCTN1Q2MV58 587 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 UBE2UQ5VVX9 321 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 KIAA1614Q5VZ46 1190 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 Q6ZNX1 250 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 VN1R5Q7Z5H4 357 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 NPAS3Q8IXF0 933 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 SVOPLQ8N434 492 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 AADATQ8N5Z0 425 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 CSGALNACT1Q8TDX6 532 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 UHRF1Q96T88 793 aaPredicted RBP11.49□□□□□ -0.57
USP1-201ENST00000339950 KCNH6Q9H252 994 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 SPATA2Q9UM82 520 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 RUVBL1Q9Y265 456 aaKnown RBP11.49□□□□□ -0.57
USP1-201ENST00000339950 TLX2O43763 284 aaPredicted RBP11.49□□□□□ -0.57
USP1-201ENST00000339950 CYP2A6P11509 494 aaPredicted RBP11.49□□□□□ -0.57
USP1-201ENST00000339950 FPR1P21462 350 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 DCKP27707 260 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 SOX3P41225 446 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 SPINT3P49223 89 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 CLCN4P51793 760 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 ADARB1P78563 741 aaKnown RBP11.49□□□□□ -0.57
USP1-201ENST00000339950 KLHL12Q53G59 568 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 ARHGAP15Q53QZ3 475 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 RBM48Q5RL73 367 aaKnown RBP11.49□□□□□ -0.57
USP1-201ENST00000339950 PDZK1Q5T2W1 519 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 OR7G3Q8NG95 312 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 DNASE1L2Q92874 299 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 FAM129BQ96TA1 746 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 BRINP2Q9C0B6 783 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms