RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 MAGEC1O60732 1142 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 CEACAM4O75871 244 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 TGDSO95455 350 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 SP9P0CG40 484 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 MMP12P39900 470 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 OPRL1P41146 370 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 SOX3P41225 446 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 XGP55808 180 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 ERVK11-1P61568 191 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 IRX4P78413 519 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 YWHAHQ04917 246 aaPredicted RBP2.89□□□□□ -1.95
HMGB1-201ENST00000326004 PRDM2Q13029 1718 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 TRA2AQ13595 282 aaKnown RBP eCLIP2.89□□□□□ -1.951e-6■□□□□ 9
HMGB1-201ENST00000326004 TMEM132DQ14C87 1099 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 NCOA1Q15788 1441 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 MTHFSDQ2M296 383 aaKnown RBP2.89□□□□□ -1.95
HMGB1-201ENST00000326004 ZNF789Q5FWF6 425 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 SLC10A5Q5PT55 438 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 ZC2HC1BQ5TFG8 222 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 OR4C11Q6IEV9 310 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 ZNF770Q6IQ21 691 aaPredicted RBP2.89□□□□□ -1.95
HMGB1-201ENST00000326004 FAAP20Q6NZ36 180 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 GBP6Q6ZN66 633 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 CHMP1BQ7LBR1 199 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 PIGWQ7Z7B1 504 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 CROCCP3Q8IVE0 287 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 TUSC5Q8IXB3 177 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 FIBINQ8TAL6 211 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 SLCO2A1Q92959 643 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 WBP2Q969T9 261 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 SNRNP40Q96DI7 357 aaKnown RBP2.89□□□□□ -1.95
HMGB1-201ENST00000326004 ZNF486Q96H40 463 aaPredicted RBP2.89□□□□□ -1.95
HMGB1-201ENST00000326004 NSMCE3Q96MG7 304 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 ZNF300Q96RE9 604 aaPredicted RBP2.89□□□□□ -1.95
HMGB1-201ENST00000326004 ALKBH7Q9BT30 221 aaPredicted RBP2.89□□□□□ -1.95
HMGB1-201ENST00000326004 DGCR6LQ9BY27 220 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 WWTR1Q9GZV5 400 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 C2orf40Q9H1Z8 148 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 MTHFD2LQ9H903 347 aaPredicted RBP2.89□□□□□ -1.95
HMGB1-201ENST00000326004 MED20Q9H944 212 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 STAU2Q9NUL3 570 aaKnown RBP eCLIP2.89□□□□□ -1.95
HMGB1-201ENST00000326004 ABCB8Q9NUT2 735 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 TMEM161AQ9NX61 479 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 SEPT10Q9P0V9 454 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 FBXL5Q9UKA1 691 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 GMEB2Q9UKD1 530 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 GPR132Q9UNW8 380 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 CSNK1G3Q9Y6M4 447 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 COLEC10Q9Y6Z7 277 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 FANCAO15360 1455 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 PFASO15067 1338 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 CUL7Q14999 1698 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 LRRC7Q96NW7 1537 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 TTC37Q6PGP7 1564 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 PTPRGP23470 1445 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 IGLV7-46A0A075B6I9 117 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 A0A0U1RQK1 487 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 ZNF320A2RRD8 509 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 A8MVM7 634 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 E5RGE8 158 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 H3BMM5 538 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 PGRMC2O15173 223 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 SURF4O15260 269 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 SAP30O75446 220 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 CLDN1O95832 211 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 GH1P01241 217 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 IGHEP01854 428 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 C8orf89P0DMQ9 161 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 EEF2P13639 858 aaKnown RBP2.88□□□□□ -1.95
HMGB1-201ENST00000326004 MYOGP15173 224 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 ITIH1P19827 911 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 OR3A1P47881 315 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 GSCP56915 257 aaPredicted RBP2.88□□□□□ -1.95
HMGB1-201ENST00000326004 KRTAP10-9P60411 292 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 ST8SIA6P61647 398 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 RPP38P78345 283 aaKnown RBP2.88□□□□□ -1.95
HMGB1-201ENST00000326004 ASIC1P78348 528 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 IRX1P78414 480 aaPredicted RBP2.88□□□□□ -1.95
HMGB1-201ENST00000326004 DRP2Q13474 957 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 DUSP5Q16690 384 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 KBTBD12Q3ZCT8 623 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 FUT11Q495W5 492 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 FAM106AQ4KMX7 169 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 IQCCQ4KMZ1 466 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 ZNF542PQ5EBM4 170 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 ARMCX4Q5H9R4 360 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 ATP1A1-AS1Q5TC04 95 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 DHRS11Q6UWP2 260 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 GET4Q7L5D6 327 aaPredicted RBP2.88□□□□□ -1.95
HMGB1-201ENST00000326004 COX8CQ7Z4L0 72 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 ZER1Q7Z7L7 766 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 CLYBLQ8N0X4 340 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 TMCO5AQ8N6Q1 288 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 CCDC185Q8N715 623 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 TMEM99Q8N816 258 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 TCEANCQ8N8B7 351 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 ZNF519Q8TB69 540 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 CASP10Q92851 521 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 OMA1Q96E52 524 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 POM121L2Q96KW2 1035 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms