RNA–Protein interactions for RNA: YDL230W

PTP1, Transcript of Phosphotyrosine-specific protein phosphatase, yeast

Gene PTP1, Length 1,008 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTP1	YDL230W	PFK1	P16861	987 aa	Known RBP	13.53	□□□□□ -0.24
PTP1	YDL230W	STE11	P23561	717 aa		13.53	□□□□□ -0.24
PTP1	YDL230W	PDC6	P26263	563 aa	Known RBP	13.53	□□□□□ -0.24
PTP1	YDL230W	EFM4	P40516	257 aa		13.53	□□□□□ -0.24
PTP1	YDL230W	SOL4	P53315	255 aa		13.53	□□□□□ -0.24
PTP1	YDL230W	OYE2	Q03558	400 aa	Known RBP	13.53	□□□□□ -0.24
PTP1	YDL230W	NEW1	Q08972	1196 aa	Known RBP	13.53	□□□□□ -0.24
PTP1	YDL230W	AIM7	Q12156	149 aa		13.53	□□□□□ -0.24
PTP1	YDL230W	ERG12	P07277	443 aa		13.52	□□□□□ -0.25
PTP1	YDL230W	RAD57	P25301	460 aa		13.52	□□□□□ -0.25
PTP1	YDL230W	RPC53	P25441	422 aa		13.52	□□□□□ -0.25
PTP1	YDL230W	SLI15	P38283	698 aa		13.52	□□□□□ -0.25
PTP1	YDL230W	MCX1	P38323	520 aa	Predicted RBP	13.52	□□□□□ -0.25
PTP1	YDL230W	VHR2	P40041	505 aa		13.52	□□□□□ -0.25
PTP1	YDL230W	DIP5	P53388	608 aa		13.52	□□□□□ -0.25
PTP1	YDL230W	VAC14	Q06708	880 aa		13.52	□□□□□ -0.25
PTP1	YDL230W	YLR001C	Q07895	862 aa		13.52	□□□□□ -0.25
PTP1	YDL230W	TUP1	P16649	713 aa		13.51	□□□□□ -0.25
PTP1	YDL230W	DAL7	P21826	554 aa		13.51	□□□□□ -0.25
PTP1	YDL230W	TRK2	P28584	889 aa		13.51	□□□□□ -0.25
PTP1	YDL230W	UGA4	P32837	571 aa		13.51	□□□□□ -0.25
PTP1	YDL230W	NUP82	P40368	713 aa		13.51	□□□□□ -0.25
PTP1	YDL230W	YAP5	P40574	245 aa		13.51	□□□□□ -0.25
PTP1	YDL230W	NBP1	P52919	319 aa	Predicted RBP	13.51	□□□□□ -0.25
PTP1	YDL230W	UTP5	Q04177	643 aa	Known RBP	13.51	□□□□□ -0.25
PTP1	YDL230W	RBA50	Q04418	439 aa		13.51	□□□□□ -0.25
PTP1	YDL230W	FUS2	Q05670	677 aa		13.51	□□□□□ -0.25
PTP1	YDL230W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	13.5	□□□□□ -0.25	not detected
PTP1	YDL230W	TOM70	P07213	617 aa	Known RBP	13.5	□□□□□ -0.25
PTP1	YDL230W	DPB3	P27344	201 aa		13.5	□□□□□ -0.25
PTP1	YDL230W	TPS3	P38426	1054 aa	Known RBP	13.5	□□□□□ -0.25
PTP1	YDL230W	TCO89	Q08921	799 aa		13.5	□□□□□ -0.25
PTP1	YDL230W	RAD18	P10862	487 aa		13.49	□□□□□ -0.25
PTP1	YDL230W	SSB1	P11484	613 aa	Known RBP	13.49	□□□□□ -0.25
PTP1	YDL230W	SUP45	P12385	437 aa	Known RBP	13.49	□□□□□ -0.25
PTP1	YDL230W	XRS2	P33301	854 aa		13.49	□□□□□ -0.25
PTP1	YDL230W	PHO88	P38264	188 aa	Predicted RBP	13.49	□□□□□ -0.25
PTP1	YDL230W	SSB2	P40150	613 aa	Known RBP	13.49	□□□□□ -0.25
PTP1	YDL230W	YFL034W	P43564	1073 aa		13.49	□□□□□ -0.25
PTP1	YDL230W	WHI4	Q07655	649 aa	Known RBP	13.49	□□□□□ -0.25
PTP1	YDL230W	NOP14	Q99207	810 aa	Known RBP	13.49	□□□□□ -0.25
PTP1	YDL230W	MAK16	P10962	306 aa	Predicted RBP	13.48	□□□□□ -0.25
PTP1	YDL230W	CDC60	P26637	1090 aa	Known RBP	13.48	□□□□□ -0.25
PTP1	YDL230W	UBP11	P36026	717 aa		13.48	□□□□□ -0.25
PTP1	YDL230W	TAD1	P53065	400 aa		13.48	□□□□□ -0.25
PTP1	YDL230W	YML037C	Q03703	340 aa		13.48	□□□□□ -0.25
PTP1	YDL230W	TMA64	Q04600	565 aa	Known RBP	13.48	□□□□□ -0.25
PTP1	YDL230W	ESS1	P22696	170 aa		13.47	□□□□□ -0.25
PTP1	YDL230W	CCM1	P48237	864 aa	Predicted RBP	13.47	□□□□□ -0.25
PTP1	YDL230W	FPK1	P53739	893 aa		13.47	□□□□□ -0.25
PTP1	YDL230W	YLR326W	Q06170	240 aa	Known RBP	13.47	□□□□□ -0.25
PTP1	YDL230W	PLP2	Q12017	286 aa		13.47	□□□□□ -0.25
PTP1	YDL230W	RKM4	Q12504	494 aa		13.47	□□□□□ -0.25
PTP1	YDL230W	SAM1	P10659	382 aa	Known RBP	13.46	□□□□□ -0.25
PTP1	YDL230W	APL1	P27351	700 aa		13.46	□□□□□ -0.25
PTP1	YDL230W	YEL1	P34225	687 aa		13.46	□□□□□ -0.25
PTP1	YDL230W	SMF1	P38925	575 aa		13.46	□□□□□ -0.25
PTP1	YDL230W	GPD2	P41911	440 aa	Known RBP	13.46	□□□□□ -0.25
PTP1	YDL230W	CTR1	P49573	406 aa		13.46	□□□□□ -0.25
PTP1	YDL230W	YGL039W	P53183	348 aa	Known RBP	13.46	□□□□□ -0.25
PTP1	YDL230W	TOF1	P53840	1238 aa		13.46	□□□□□ -0.25
PTP1	YDL230W	SOV1	Q04748	898 aa		13.46	□□□□□ -0.25
PTP1	YDL230W	YPL277C	Q08989	487 aa		13.46	□□□□□ -0.25
PTP1	YDL230W	CSR2	Q12734	1121 aa		13.46	□□□□□ -0.25
PTP1	YDL230W	SMC1	P32908	1225 aa		13.45	□□□□□ -0.26
PTP1	YDL230W	PGM2	P37012	569 aa	Known RBP	13.45	□□□□□ -0.26
PTP1	YDL230W	LIF1	P53150	421 aa		13.45	□□□□□ -0.26
PTP1	YDL230W	SRD1	P09007	221 aa		13.44	□□□□□ -0.26
PTP1	YDL230W	FBP1	P09201	348 aa		13.44	□□□□□ -0.26
PTP1	YDL230W	CLN3	P13365	580 aa		13.44	□□□□□ -0.26
PTP1	YDL230W	PAP1	P29468	568 aa	Known RBP	13.44	□□□□□ -0.26
PTP1	YDL230W	SRB4	P32569	687 aa		13.44	□□□□□ -0.26
PTP1	YDL230W	PGM1	P33401	570 aa	Known RBP	13.44	□□□□□ -0.26
PTP1	YDL230W	TGL1	P34163	548 aa		13.44	□□□□□ -0.26
PTP1	YDL230W	SMC2	P38989	1170 aa	Known RBP	13.44	□□□□□ -0.26
PTP1	YDL230W	BUD16	P39988	312 aa		13.44	□□□□□ -0.26
PTP1	YDL230W	MMM1	P41800	426 aa		13.44	□□□□□ -0.26
PTP1	YDL230W	MAL13	P53338	473 aa		13.44	□□□□□ -0.26
PTP1	YDL230W	SEC5	P89102	971 aa		13.44	□□□□□ -0.26
PTP1	YDL230W	NGL3	Q03210	505 aa		13.44	□□□□□ -0.26
PTP1	YDL230W	MED1	Q12321	566 aa		13.44	□□□□□ -0.26
PTP1	YDL230W	YKL068W-A	Q3E826	78 aa		13.44	□□□□□ -0.26
PTP1	YDL230W	THS1	P04801	734 aa	Known RBP	13.43	□□□□□ -0.26
PTP1	YDL230W	GAL2	P13181	574 aa		13.43	□□□□□ -0.26
PTP1	YDL230W	MRF1	P30775	413 aa	Predicted RBP	13.43	□□□□□ -0.26
PTP1	YDL230W	NIP100	P33420	868 aa		13.43	□□□□□ -0.26
PTP1	YDL230W	SET5	P38890	526 aa	Known RBP	13.43	□□□□□ -0.26
PTP1	YDL230W	CCT4	P39078	528 aa	Known RBP	13.43	□□□□□ -0.26
PTP1	YDL230W	CIN4	P39110	191 aa		13.43	□□□□□ -0.26
PTP1	YDL230W	YMR124W	P39523	943 aa	Known RBP	13.43	□□□□□ -0.26
PTP1	YDL230W	ARK1	P53974	638 aa		13.43	□□□□□ -0.26
PTP1	YDL230W	ALD6	P54115	500 aa	Known RBP	13.43	□□□□□ -0.26
PTP1	YDL230W	PEX29	Q03370	554 aa		13.43	□□□□□ -0.26
PTP1	YDL230W	ATG23	Q06671	453 aa		13.43	□□□□□ -0.26
PTP1	YDL230W	OPY2	Q06810	360 aa		13.43	□□□□□ -0.26
PTP1	YDL230W	SIL1	Q08199	421 aa		13.43	□□□□□ -0.26
PTP1	YDL230W	FAL1	Q12099	399 aa	Known RBP	13.43	□□□□□ -0.26
PTP1	YDL230W	YLR278C	Q05854	1341 aa		13.42	□□□□□ -0.26
PTP1	YDL230W	PRP22	P24384	1145 aa	Known RBP	13.42	□□□□□ -0.26
PTP1	YDL230W	YEL043W	P32618	956 aa		13.42	□□□□□ -0.26

Retrieved 100 of 5,963 RNA–protein pairs in 42.7 ms