RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 TRIM35Q9UPQ4 493 aa27.14■■□□□ 1.94
CLN3-240ENST00000631023 SNRPA1P09661 255 aaKnown RBP27.14■■□□□ 1.93
CLN3-240ENST00000631023 BABAM1Q9NWV8 329 aa27.14■■□□□ 1.93
CLN3-240ENST00000631023 RFC4P35249 363 aa27.13■■□□□ 1.93
CLN3-240ENST00000631023 ARHGEF1Q92888 912 aaKnown RBP27.13■■□□□ 1.93
CLN3-240ENST00000631023 SGIP1Q9BQI5 828 aa27.13■■□□□ 1.93
CLN3-240ENST00000631023 TSPYL4Q9UJ04 414 aa27.11■■□□□ 1.93
CLN3-240ENST00000631023 C4AP0C0L4 1744 aa27.1■■□□□ 1.93
CLN3-240ENST00000631023 MSL1Q68DK7 614 aa27.09■■□□□ 1.93
CLN3-240ENST00000631023 ARXQ96QS3 562 aa27.09■■□□□ 1.93
CLN3-240ENST00000631023 ZBTB1Q9Y2K1 713 aa27.09■■□□□ 1.93
CLN3-240ENST00000631023 FAM9BQ8IZU0 186 aa27.08■■□□□ 1.93
CLN3-240ENST00000631023 SOS1Q07889 1333 aaPredicted RBP27.08■■□□□ 1.93
CLN3-240ENST00000631023 CANXP27824 592 aaKnown RBP27.07■■□□□ 1.92
CLN3-240ENST00000631023 EIF4A1P60842 406 aaKnown RBP27.07■■□□□ 1.92
CLN3-240ENST00000631023 CALD1Q05682 793 aaKnown RBP27.07■■□□□ 1.92
CLN3-240ENST00000631023 USP16Q9Y5T5 823 aa27.06■■□□□ 1.92
CLN3-240ENST00000631023 NPM2Q86SE8 214 aaKnown RBP27.05■■□□□ 1.92
CLN3-240ENST00000631023 LAS1LQ9Y4W2 734 aaKnown RBP27.05■■□□□ 1.92
CLN3-240ENST00000631023 DIEXFQ68CQ4 756 aaKnown RBP27.05■■□□□ 1.92
CLN3-240ENST00000631023 NLGN1Q8N2Q7 840 aa27.05■■□□□ 1.92
CLN3-240ENST00000631023 LAMB4A4D0S4 1761 aa27.05■■□□□ 1.92
CLN3-240ENST00000631023 PRAMEF22A3QJZ6 481 aa27.04■■□□□ 1.92
CLN3-240ENST00000631023 CHL1O00533 1208 aa27.04■■□□□ 1.92
CLN3-240ENST00000631023 ZPR1O75312 459 aa27.04■■□□□ 1.92
CLN3-240ENST00000631023 GIGYF1O75420 1035 aaPredicted RBP27.04■■□□□ 1.92
CLN3-240ENST00000631023 COL15A1P39059 1388 aa27.03■■□□□ 1.92
CLN3-240ENST00000631023 A0A087WZG4 1122 aa27.03■■□□□ 1.92
CLN3-240ENST00000631023 A1BGP04217 495 aa27.03■■□□□ 1.92
CLN3-240ENST00000631023 IL6STP40189 918 aaPredicted RBP27.02■■□□□ 1.92
CLN3-240ENST00000631023 EIF5P55010 431 aaKnown RBP27.02■■□□□ 1.92
CLN3-240ENST00000631023 CFAP44Q96MT7 982 aa27.02■■□□□ 1.92
CLN3-240ENST00000631023 USP42Q9H9J4 1324 aaKnown RBP27.01■■□□□ 1.92
CLN3-240ENST00000631023 CCER2I3L3R5 266 aa27.01■■□□□ 1.92
CLN3-240ENST00000631023 NCBP3Q53F19 620 aaKnown RBP27.01■■□□□ 1.92
CLN3-240ENST00000631023 GYS1P13807 737 aa27.01■■□□□ 1.91
CLN3-240ENST00000631023 CCDC27Q2M243 656 aa27.01■■□□□ 1.91
CLN3-240ENST00000631023 NARFQ9UHQ1 456 aa27■■□□□ 1.91
CLN3-240ENST00000631023 ZNF330Q9Y3S2 320 aaPredicted RBP27■■□□□ 1.91
CLN3-240ENST00000631023 FHDC1Q9C0D6 1143 aaPredicted RBP26.99■■□□□ 1.91
CLN3-240ENST00000631023 SRP68Q9UHB9 627 aaKnown RBP26.99■■□□□ 1.91
CLN3-240ENST00000631023 GNAI1P63096 354 aa26.98■■□□□ 1.91
CLN3-240ENST00000631023 IFT57Q9NWB7 429 aa26.98■■□□□ 1.91
CLN3-240ENST00000631023 MMP10P09238 476 aa26.97■■□□□ 1.91
CLN3-240ENST00000631023 USPL1Q5W0Q7 1092 aa26.97■■□□□ 1.91
CLN3-240ENST00000631023 WWC1Q8IX03 1113 aa26.97■■□□□ 1.91
CLN3-240ENST00000631023 KLHL34Q8N239 644 aa26.96■■□□□ 1.91
CLN3-240ENST00000631023 SYT17Q9BSW7 474 aa26.96■■□□□ 1.91
CLN3-240ENST00000631023 SENP3-EIF4A1A0A087X0R7 540 aa26.95■■□□□ 1.9
CLN3-240ENST00000631023 ZNF853P0CG23 659 aa26.94■■□□□ 1.9
CLN3-240ENST00000631023 FKBP8Q14318 412 aa26.94■■□□□ 1.9
CLN3-240ENST00000631023 NGEFQ8N5V2 710 aa26.94■■□□□ 1.9
CLN3-240ENST00000631023 PIP4K2AP48426 406 aaPredicted RBP26.93■■□□□ 1.9
CLN3-240ENST00000631023 MBIPQ9NS73 344 aa26.93■■□□□ 1.9
CLN3-240ENST00000631023 NBPF26B4DH59 902 aa26.92■■□□□ 1.9
CLN3-240ENST00000631023 NBPF10Q6P3W6 841 aaKnown RBP26.92■■□□□ 1.9
CLN3-240ENST00000631023 NBPF15Q8N660 670 aa26.92■■□□□ 1.9
CLN3-240ENST00000631023 TBC1D2BQ9UPU7 963 aa26.92■■□□□ 1.9
CLN3-240ENST00000631023 PARP3Q9Y6F1 533 aa26.92■■□□□ 1.9
CLN3-240ENST00000631023 SALL2Q9Y467 1007 aaPredicted RBP26.92■■□□□ 1.9
CLN3-240ENST00000631023 EIF2S2P20042 333 aaKnown RBP26.91■■□□□ 1.9
CLN3-240ENST00000631023 DZIP3Q86Y13 1208 aaKnown RBP26.91■■□□□ 1.9
CLN3-240ENST00000631023 ERBB4Q15303 1308 aa26.91■■□□□ 1.9
CLN3-240ENST00000631023 CD2APQ9Y5K6 639 aa26.9■■□□□ 1.9
CLN3-240ENST00000631023 SCN7AQ01118 1682 aa26.89■■□□□ 1.89
CLN3-240ENST00000631023 HOXB7P09629 217 aa26.88■■□□□ 1.89
CLN3-240ENST00000631023 IL16Q14005 1332 aa26.88■■□□□ 1.89
CLN3-240ENST00000631023 DCAF8L1A6NGE4 600 aa26.88■■□□□ 1.89
CLN3-240ENST00000631023 TM4SF1P30408 202 aa26.88■■□□□ 1.89
CLN3-240ENST00000631023 WDR63Q8IWG1 891 aa26.88■■□□□ 1.89
CLN3-240ENST00000631023 BCL2L12Q9HB09 334 aa26.88■■□□□ 1.89
CLN3-240ENST00000631023 KRT24Q2M2I5 525 aa26.87■■□□□ 1.89
CLN3-240ENST00000631023 BCORQ6W2J9 1755 aa26.86■■□□□ 1.89
CLN3-240ENST00000631023 MYL6BP14649 208 aa26.86■■□□□ 1.89
CLN3-240ENST00000631023 MIER1Q8N108 512 aa26.86■■□□□ 1.89
CLN3-240ENST00000631023 CAMTA2O94983 1202 aa26.85■■□□□ 1.89
CLN3-240ENST00000631023 DUSP27Q5VZP5 1158 aa26.85■■□□□ 1.89
CLN3-240ENST00000631023 NFIXQ14938 502 aa26.84■■□□□ 1.89
CLN3-240ENST00000631023 ZNF652Q9Y2D9 606 aa26.84■■□□□ 1.89
CLN3-240ENST00000631023 AFDNP55196 1824 aaKnown RBP26.84■■□□□ 1.89
CLN3-240ENST00000631023 CLEC4GQ6UXB4 293 aa26.84■■□□□ 1.89
CLN3-240ENST00000631023 KIF13BQ9NQT8 1826 aa26.84■■□□□ 1.89
CLN3-240ENST00000631023 RGL2O15211 777 aa26.83■■□□□ 1.89
CLN3-240ENST00000631023 DDR1Q08345 913 aa26.83■■□□□ 1.89
CLN3-240ENST00000631023 NECTIN2Q92692 538 aa26.83■■□□□ 1.89
CLN3-240ENST00000631023 POLRMTO00411 1230 aaKnown RBP26.82■■□□□ 1.88
CLN3-240ENST00000631023 HDGFL1Q5TGJ6 251 aa26.82■■□□□ 1.88
CLN3-240ENST00000631023 BICDL1Q6ZP65 573 aa26.82■■□□□ 1.88
CLN3-240ENST00000631023 CHMP4AQ9BY43 222 aa26.82■■□□□ 1.88
CLN3-240ENST00000631023 NUP98P52948 1817 aa26.82■■□□□ 1.88
CLN3-240ENST00000631023 KIF6Q6ZMV9 814 aa26.81■■□□□ 1.88
CLN3-240ENST00000631023 NLGN2Q8NFZ4 835 aa26.81■■□□□ 1.88
CLN3-240ENST00000631023 PDIA6Q15084 440 aa26.8■■□□□ 1.88
CLN3-240ENST00000631023 TBC1D9BQ66K14 1250 aa26.8■■□□□ 1.88
CLN3-240ENST00000631023 TSR2Q969E8 191 aaKnown RBP26.8■■□□□ 1.88
CLN3-240ENST00000631023 SETDB2Q96T68 719 aa26.8■■□□□ 1.88
CLN3-240ENST00000631023 DDX21Q9NR30 783 aaKnown RBP eCLIP26.8■■□□□ 1.88
CLN3-240ENST00000631023 ERVV-1B6SEH8 477 aa26.79■■□□□ 1.88
CLN3-240ENST00000631023 ELL2O00472 640 aaPredicted RBP26.79■■□□□ 1.88
CLN3-240ENST00000631023 SERPINB2P05120 415 aa26.79■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 799.1 ms