RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 CCDC87Q9NVE4 849 aa21.6■■□□□ 1.05
CCDC28A-202ENST00000611852 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.6■■□□□ 1.05
CCDC28A-202ENST00000611852 RPS6KA4O75676 772 aa21.6■■□□□ 1.05
CCDC28A-202ENST00000611852 PHF14O94880 888 aa21.6■■□□□ 1.05
CCDC28A-202ENST00000611852 NGEFQ8N5V2 710 aa21.6■■□□□ 1.05
CCDC28A-202ENST00000611852 FLAD1Q8NFF5 587 aa21.6■■□□□ 1.05
CCDC28A-202ENST00000611852 IFT57Q9NWB7 429 aa21.6■■□□□ 1.05
CCDC28A-202ENST00000611852 RTCBQ9Y3I0 505 aaKnown RBP21.6■■□□□ 1.05
CCDC28A-202ENST00000611852 USP16Q9Y5T5 823 aa21.6■■□□□ 1.05
CCDC28A-202ENST00000611852 GIGYF1O75420 1035 aaPredicted RBP21.59■■□□□ 1.05
CCDC28A-202ENST00000611852 GNAI1P63096 354 aa21.58■■□□□ 1.04
CCDC28A-202ENST00000611852 MBIPQ9NS73 344 aa21.57■■□□□ 1.04
CCDC28A-202ENST00000611852 ZBTB1Q9Y2K1 713 aa21.57■■□□□ 1.04
CCDC28A-202ENST00000611852 MSH5O43196 834 aa21.56■■□□□ 1.04
CCDC28A-202ENST00000611852 ZBTB7AO95365 584 aa21.56■■□□□ 1.04
CCDC28A-202ENST00000611852 SLC16A10Q8TF71 515 aa21.56■■□□□ 1.04
CCDC28A-202ENST00000611852 ADRA2BP18089 450 aa21.55■■□□□ 1.04
CCDC28A-202ENST00000611852 TRAPPC3LQ5T215 181 aa21.55■■□□□ 1.04
CCDC28A-202ENST00000611852 A1BGP04217 495 aa21.55■■□□□ 1.04
CCDC28A-202ENST00000611852 WDR63Q8IWG1 891 aa21.55■■□□□ 1.04
CCDC28A-202ENST00000611852 MTFR1LQ9H019 292 aa21.55■■□□□ 1.04
CCDC28A-202ENST00000611852 IL16Q14005 1332 aa21.54■■□□□ 1.04
CCDC28A-202ENST00000611852 LAMB4A4D0S4 1761 aa21.54■■□□□ 1.04
CCDC28A-202ENST00000611852 CANXP27824 592 aaKnown RBP21.54■■□□□ 1.04
CCDC28A-202ENST00000611852 ARHGEF1Q92888 912 aaKnown RBP21.54■■□□□ 1.04
CCDC28A-202ENST00000611852 SOS1Q07889 1333 aaPredicted RBP21.54■■□□□ 1.04
CCDC28A-202ENST00000611852 KRT24Q2M2I5 525 aa21.53■■□□□ 1.04
CCDC28A-202ENST00000611852 ZNF521Q96K83 1311 aa21.52■■□□□ 1.04
CCDC28A-202ENST00000611852 SPON1Q9HCB6 807 aa21.52■■□□□ 1.04
CCDC28A-202ENST00000611852 ATF5Q9Y2D1 282 aaPredicted RBP21.52■■□□□ 1.04
CCDC28A-202ENST00000611852 EIF5P55010 431 aaKnown RBP21.51■■□□□ 1.03
CCDC28A-202ENST00000611852 SRCAPQ6ZRS2 3230 aa21.51■■□□□ 1.03
CCDC28A-202ENST00000611852 C4AP0C0L4 1744 aa21.51■■□□□ 1.03
CCDC28A-202ENST00000611852 TSR2Q969E8 191 aaKnown RBP21.5■■□□□ 1.03
CCDC28A-202ENST00000611852 COL15A1P39059 1388 aa21.5■■□□□ 1.03
CCDC28A-202ENST00000611852 LRP5O75197 1615 aa21.5■■□□□ 1.03
CCDC28A-202ENST00000611852 RFC4P35249 363 aa21.5■■□□□ 1.03
CCDC28A-202ENST00000611852 IL6STP40189 918 aaPredicted RBP21.5■■□□□ 1.03
CCDC28A-202ENST00000611852 PIP4K2AP48426 406 aaPredicted RBP21.5■■□□□ 1.03
CCDC28A-202ENST00000611852 NBPF26B4DH59 902 aa21.49■■□□□ 1.03
CCDC28A-202ENST00000611852 PTGER2P43116 358 aa21.49■■□□□ 1.03
CCDC28A-202ENST00000611852 NBPF10Q6P3W6 841 aaKnown RBP21.49■■□□□ 1.03
CCDC28A-202ENST00000611852 NBPF15Q8N660 670 aa21.49■■□□□ 1.03
CCDC28A-202ENST00000611852 COL24A1Q17RW2 1714 aa21.48■■□□□ 1.03
CCDC28A-202ENST00000611852 SGIP1Q9BQI5 828 aa21.48■■□□□ 1.03
CCDC28A-202ENST00000611852 SPINK5Q9NQ38 1064 aaPredicted RBP21.48■■□□□ 1.03
CCDC28A-202ENST00000611852 HOXB7P09629 217 aa21.47■■□□□ 1.03
CCDC28A-202ENST00000611852 DUSP27Q5VZP5 1158 aa21.47■■□□□ 1.03
CCDC28A-202ENST00000611852 MSL1Q68DK7 614 aa21.47■■□□□ 1.03
CCDC28A-202ENST00000611852 ZNF330Q9Y3S2 320 aaPredicted RBP21.47■■□□□ 1.03
CCDC28A-202ENST00000611852 USP42Q9H9J4 1324 aaKnown RBP21.46■■□□□ 1.03
CCDC28A-202ENST00000611852 EIF2S2P20042 333 aaKnown RBP21.46■■□□□ 1.03
CCDC28A-202ENST00000611852 SRP68Q9UHB9 627 aaKnown RBP21.46■■□□□ 1.03
CCDC28A-202ENST00000611852 FANCIQ9NVI1 1328 aa21.46■■□□□ 1.03
CCDC28A-202ENST00000611852 GYS1P13807 737 aa21.45■■□□□ 1.02
CCDC28A-202ENST00000611852 C8orf58Q8NAV2 365 aa21.45■■□□□ 1.02
CCDC28A-202ENST00000611852 NARFQ9UHQ1 456 aa21.45■■□□□ 1.02
CCDC28A-202ENST00000611852 ERBB4Q15303 1308 aa21.45■■□□□ 1.02
CCDC28A-202ENST00000611852 A0A087WZG4 1122 aa21.45■■□□□ 1.02
CCDC28A-202ENST00000611852 ELL2O00472 640 aaPredicted RBP21.44■■□□□ 1.02
CCDC28A-202ENST00000611852 ZPR1O75312 459 aa21.44■■□□□ 1.02
CCDC28A-202ENST00000611852 NPM2Q86SE8 214 aaKnown RBP21.44■■□□□ 1.02
CCDC28A-202ENST00000611852 PDIA6Q15084 440 aa21.43■■□□□ 1.02
CCDC28A-202ENST00000611852 USPL1Q5W0Q7 1092 aa21.43■■□□□ 1.02
CCDC28A-202ENST00000611852 TSPYL6Q8N831 410 aa21.43■■□□□ 1.02
CCDC28A-202ENST00000611852 NECTIN2Q92692 538 aa21.43■■□□□ 1.02
CCDC28A-202ENST00000611852 MYH16Q9H6N6 1097 aa21.43■■□□□ 1.02
CCDC28A-202ENST00000611852 TBC1D2BQ9UPU7 963 aa21.43■■□□□ 1.02
CCDC28A-202ENST00000611852 POLD1P28340 1107 aa21.42■■□□□ 1.02
CCDC28A-202ENST00000611852 GOLGA2Q08379 1002 aa21.42■■□□□ 1.02
CCDC28A-202ENST00000611852 HDGFL1Q5TGJ6 251 aa21.42■■□□□ 1.02
CCDC28A-202ENST00000611852 NLGN1Q8N2Q7 840 aa21.42■■□□□ 1.02
CCDC28A-202ENST00000611852 MYL6BP14649 208 aa21.41■■□□□ 1.02
CCDC28A-202ENST00000611852 FKBP8Q14318 412 aa21.4■■□□□ 1.02
CCDC28A-202ENST00000611852 PROSER3Q2NL68 480 aa21.4■■□□□ 1.02
CCDC28A-202ENST00000611852 LRP10Q7Z4F1 713 aa21.4■■□□□ 1.02
CCDC28A-202ENST00000611852 DZIP3Q86Y13 1208 aaKnown RBP21.4■■□□□ 1.02
CCDC28A-202ENST00000611852 ARXQ96QS3 562 aa21.4■■□□□ 1.02
CCDC28A-202ENST00000611852 BCL2L12Q9HB09 334 aa21.4■■□□□ 1.02
CCDC28A-202ENST00000611852 CHPF2Q9P2E5 772 aa21.39■■□□□ 1.02
CCDC28A-202ENST00000611852 CAMTA2O94983 1202 aa21.39■■□□□ 1.01
CCDC28A-202ENST00000611852 ANXA1P04083 346 aa21.39■■□□□ 1.01
CCDC28A-202ENST00000611852 HNRNPUQ00839 825 aaKnown RBP eCLIP21.39■■□□□ 1.01
CCDC28A-202ENST00000611852 DDX21Q9NR30 783 aaKnown RBP eCLIP21.39■■□□□ 1.01
CCDC28A-202ENST00000611852 SCN7AQ01118 1682 aa21.38■■□□□ 1.01
CCDC28A-202ENST00000611852 E9PSI1 815 aa21.38■■□□□ 1.01
CCDC28A-202ENST00000611852 EXOSC9Q06265 439 aaKnown RBP21.38■■□□□ 1.01
CCDC28A-202ENST00000611852 TWISTNBQ3B726 338 aaPredicted RBP21.38■■□□□ 1.01
CCDC28A-202ENST00000611852 PPP1R1BQ9UD71 204 aaPredicted RBP21.38■■□□□ 1.01
CCDC28A-202ENST00000611852 MMP10P09238 476 aa21.37■■□□□ 1.01
CCDC28A-202ENST00000611852 SLFN5Q08AF3 891 aa21.37■■□□□ 1.01
CCDC28A-202ENST00000611852 CDCA7LQ96GN5 454 aa21.37■■□□□ 1.01
CCDC28A-202ENST00000611852 DBF4Q9UBU7 674 aaPredicted RBP21.37■■□□□ 1.01
CCDC28A-202ENST00000611852 BCORQ6W2J9 1755 aa21.37■■□□□ 1.01
CCDC28A-202ENST00000611852 TTLL7Q6ZT98 887 aa21.36■■□□□ 1.01
CCDC28A-202ENST00000611852 CHMP4AQ9BY43 222 aa21.35■■□□□ 1.01
CCDC28A-202ENST00000611852 TM4SF1P30408 202 aa21.34■■□□□ 1.01
CCDC28A-202ENST00000611852 CCDC30Q5VVM6 783 aa21.34■■□□□ 1.01
CCDC28A-202ENST00000611852 VAMP4O75379 141 aa21.34■■□□□ 1.01
CCDC28A-202ENST00000611852 RGL2O15211 777 aa21.33■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms