RNA–Protein interactions for RNA: ENST00000598570.5

USHBP1-209, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-209ENST00000598570 CHL1O00533 1208 aa23.21■■□□□ 1.31
USHBP1-209ENST00000598570 SNRPA1P09661 255 aaKnown RBP23.21■■□□□ 1.31
USHBP1-209ENST00000598570 EIF4A1P60842 406 aaKnown RBP23.21■■□□□ 1.31
USHBP1-209ENST00000598570 MRS2Q9HD23 443 aa23.2■■□□□ 1.3
USHBP1-209ENST00000598570 MIS18AQ9NYP9 233 aa23.2■■□□□ 1.3
USHBP1-209ENST00000598570 APAF1O14727 1248 aa23.19■■□□□ 1.3
USHBP1-209ENST00000598570 PHF14O94880 888 aa23.19■■□□□ 1.3
USHBP1-209ENST00000598570 GYS1P13807 737 aa23.19■■□□□ 1.3
USHBP1-209ENST00000598570 ZBTB1Q9Y2K1 713 aa23.19■■□□□ 1.3
USHBP1-209ENST00000598570 RRP7AQ9Y3A4 280 aaKnown RBP23.19■■□□□ 1.3
USHBP1-209ENST00000598570 USP16Q9Y5T5 823 aa23.19■■□□□ 1.3
USHBP1-209ENST00000598570 GIGYF1O75420 1035 aaPredicted RBP23.18■■□□□ 1.3
USHBP1-209ENST00000598570 POLD1P28340 1107 aa23.18■■□□□ 1.3
USHBP1-209ENST00000598570 NLGN1Q8N2Q7 840 aa23.18■■□□□ 1.3
USHBP1-209ENST00000598570 USP42Q9H9J4 1324 aaKnown RBP23.17■■□□□ 1.3
USHBP1-209ENST00000598570 MSH5O43196 834 aa23.17■■□□□ 1.3
USHBP1-209ENST00000598570 ZNF853P0CG23 659 aa23.17■■□□□ 1.3
USHBP1-209ENST00000598570 IL6STP40189 918 aaPredicted RBP23.17■■□□□ 1.3
USHBP1-209ENST00000598570 CCDC27Q2M243 656 aa23.17■■□□□ 1.3
USHBP1-209ENST00000598570 RFC4P35249 363 aa23.16■■□□□ 1.3
USHBP1-209ENST00000598570 SYT17Q9BSW7 474 aa23.16■■□□□ 1.3
USHBP1-209ENST00000598570 PRAMEF22A3QJZ6 481 aa23.15■■□□□ 1.3
USHBP1-209ENST00000598570 PPP1R1BQ9UD71 204 aaPredicted RBP23.15■■□□□ 1.3
USHBP1-209ENST00000598570 NARFQ9UHQ1 456 aa23.15■■□□□ 1.3
USHBP1-209ENST00000598570 FHDC1Q9C0D6 1143 aaPredicted RBP23.14■■□□□ 1.29
USHBP1-209ENST00000598570 RGL2O15211 777 aa23.13■■□□□ 1.29
USHBP1-209ENST00000598570 A1BGP04217 495 aa23.13■■□□□ 1.29
USHBP1-209ENST00000598570 TM4SF1P30408 202 aa23.13■■□□□ 1.29
USHBP1-209ENST00000598570 NEUROD2Q15784 382 aa23.13■■□□□ 1.29
USHBP1-209ENST00000598570 MSL1Q68DK7 614 aa23.13■■□□□ 1.29
USHBP1-209ENST00000598570 CFAP44Q96MT7 982 aa23.13■■□□□ 1.29
USHBP1-209ENST00000598570 COL15A1P39059 1388 aa23.13■■□□□ 1.29
USHBP1-209ENST00000598570 LAMB4A4D0S4 1761 aa23.12■■□□□ 1.29
USHBP1-209ENST00000598570 A0A087WZG4 1122 aa23.12■■□□□ 1.29
USHBP1-209ENST00000598570 NBPF26B4DH59 902 aa23.12■■□□□ 1.29
USHBP1-209ENST00000598570 NBPF10Q6P3W6 841 aaKnown RBP23.12■■□□□ 1.29
USHBP1-209ENST00000598570 NBPF15Q8N660 670 aa23.12■■□□□ 1.29
USHBP1-209ENST00000598570 BCL2L12Q9HB09 334 aa23.12■■□□□ 1.29
USHBP1-209ENST00000598570 TSPYL4Q9UJ04 414 aa23.11■■□□□ 1.29
USHBP1-209ENST00000598570 CD2APQ9Y5K6 639 aa23.11■■□□□ 1.29
USHBP1-209ENST00000598570 CANXP27824 592 aaKnown RBP23.1■■□□□ 1.29
USHBP1-209ENST00000598570 SRP68Q9UHB9 627 aaKnown RBP23.1■■□□□ 1.29
USHBP1-209ENST00000598570 FKBP8Q14318 412 aa23.09■■□□□ 1.29
USHBP1-209ENST00000598570 KIF13BQ9NQT8 1826 aa23.09■■□□□ 1.29
USHBP1-209ENST00000598570 CCER2I3L3R5 266 aa23.08■■□□□ 1.29
USHBP1-209ENST00000598570 MMP10P09238 476 aa23.08■■□□□ 1.29
USHBP1-209ENST00000598570 CALD1Q05682 793 aaKnown RBP23.08■■□□□ 1.29
USHBP1-209ENST00000598570 IFT57Q9NWB7 429 aa23.08■■□□□ 1.29
USHBP1-209ENST00000598570 ERBB4Q15303 1308 aa23.08■■□□□ 1.28
USHBP1-209ENST00000598570 ZPR1O75312 459 aa23.07■■□□□ 1.28
USHBP1-209ENST00000598570 USPL1Q5W0Q7 1092 aa23.07■■□□□ 1.28
USHBP1-209ENST00000598570 WWC1Q8IX03 1113 aa23.07■■□□□ 1.28
USHBP1-209ENST00000598570 NGEFQ8N5V2 710 aa23.07■■□□□ 1.28
USHBP1-209ENST00000598570 LRP10Q7Z4F1 713 aa23.06■■□□□ 1.28
USHBP1-209ENST00000598570 HOXB7P09629 217 aa23.05■■□□□ 1.28
USHBP1-209ENST00000598570 IL16Q14005 1332 aa23.05■■□□□ 1.28
USHBP1-209ENST00000598570 CAMTA2O94983 1202 aa23.04■■□□□ 1.28
USHBP1-209ENST00000598570 DDR1Q08345 913 aa23.04■■□□□ 1.28
USHBP1-209ENST00000598570 PDIA6Q15084 440 aa23.04■■□□□ 1.28
USHBP1-209ENST00000598570 NRXN2Q9P2S2 1712 aa23.04■■□□□ 1.28
USHBP1-209ENST00000598570 SCN7AQ01118 1682 aa23.03■■□□□ 1.28
USHBP1-209ENST00000598570 POLRMTO00411 1230 aaKnown RBP23.03■■□□□ 1.28
USHBP1-209ENST00000598570 GNAI1P63096 354 aa23.03■■□□□ 1.28
USHBP1-209ENST00000598570 CLEC4GQ6UXB4 293 aa23.03■■□□□ 1.28
USHBP1-209ENST00000598570 MBIPQ9NS73 344 aa23.03■■□□□ 1.28
USHBP1-209ENST00000598570 NFIXQ14938 502 aa23.02■■□□□ 1.28
USHBP1-209ENST00000598570 BCORQ6W2J9 1755 aa23.01■■□□□ 1.27
USHBP1-209ENST00000598570 C10orf71Q711Q0 1435 aa23.01■■□□□ 1.27
USHBP1-209ENST00000598570 TBC1D2BQ9UPU7 963 aa23.01■■□□□ 1.27
USHBP1-209ENST00000598570 KIAA1551Q9HCM1 1747 aa23■■□□□ 1.27
USHBP1-209ENST00000598570 WDR63Q8IWG1 891 aa23■■□□□ 1.27
USHBP1-209ENST00000598570 NLGN2Q8NFZ4 835 aa23■■□□□ 1.27
USHBP1-209ENST00000598570 DZIP3Q86Y13 1208 aaKnown RBP22.99■■□□□ 1.27
USHBP1-209ENST00000598570 PARP3Q9Y6F1 533 aa22.99■■□□□ 1.27
USHBP1-209ENST00000598570 ERVV-1B6SEH8 477 aa22.98■■□□□ 1.27
USHBP1-209ENST00000598570 PIP4K2AP48426 406 aaPredicted RBP22.98■■□□□ 1.27
USHBP1-209ENST00000598570 TGFB2P61812 414 aa22.98■■□□□ 1.27
USHBP1-209ENST00000598570 KRT24Q2M2I5 525 aa22.98■■□□□ 1.27
USHBP1-209ENST00000598570 AFDNP55196 1824 aaKnown RBP22.97■■□□□ 1.27
USHBP1-209ENST00000598570 FAM9BQ8IZU0 186 aa22.97■■□□□ 1.27
USHBP1-209ENST00000598570 ZNF521Q96K83 1311 aa22.97■■□□□ 1.27
USHBP1-209ENST00000598570 TBC1D9BQ66K14 1250 aa22.96■■□□□ 1.27
USHBP1-209ENST00000598570 DDX21Q9NR30 783 aaKnown RBP eCLIP22.95■■□□□ 1.26
USHBP1-209ENST00000598570 LAS1LQ9Y4W2 734 aaKnown RBP22.95■■□□□ 1.26
USHBP1-209ENST00000598570 DUSP27Q5VZP5 1158 aa22.94■■□□□ 1.26
USHBP1-209ENST00000598570 DIEXFQ68CQ4 756 aaKnown RBP22.94■■□□□ 1.26
USHBP1-209ENST00000598570 PXDNLA1KZ92 1463 aa22.93■■□□□ 1.26
USHBP1-209ENST00000598570 SERPINB2P05120 415 aa22.93■■□□□ 1.26
USHBP1-209ENST00000598570 KCNA3P22001 575 aa22.93■■□□□ 1.26
USHBP1-209ENST00000598570 MAP3K15Q6ZN16 1313 aa22.92■■□□□ 1.26
USHBP1-209ENST00000598570 PROSER3Q2NL68 480 aa22.92■■□□□ 1.26
USHBP1-209ENST00000598570 NPM2Q86SE8 214 aaKnown RBP22.92■■□□□ 1.26
USHBP1-209ENST00000598570 C8orf58Q8NAV2 365 aa22.92■■□□□ 1.26
USHBP1-209ENST00000598570 NUP98P52948 1817 aa22.92■■□□□ 1.26
USHBP1-209ENST00000598570 TTLL7Q6ZT98 887 aa22.91■■□□□ 1.26
USHBP1-209ENST00000598570 GOLGB1Q14789 3259 aaKnown RBP22.91■■□□□ 1.26
USHBP1-209ENST00000598570 CARMIL3Q8ND23 1372 aa22.9■■□□□ 1.26
USHBP1-209ENST00000598570 BRCA1P38398 1863 aaKnown RBP22.9■■□□□ 1.26
USHBP1-209ENST00000598570 EIF2S2P20042 333 aaKnown RBP22.9■■□□□ 1.26
USHBP1-209ENST00000598570 HLFQ16534 295 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms