RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 CICQ96RK0 1608 aaPredicted RBP18.61■□□□□ 0.57
SHKBP1-217ENST00000598558 GIGYF1O75420 1035 aaPredicted RBP18.61■□□□□ 0.57
SHKBP1-217ENST00000598558 SNRPA1P09661 255 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-217ENST00000598558 PIP4K2AP48426 406 aaPredicted RBP18.61■□□□□ 0.57
SHKBP1-217ENST00000598558 CCDC27Q2M243 656 aa18.61■□□□□ 0.57
SHKBP1-217ENST00000598558 BABAM1Q9NWV8 329 aa18.61■□□□□ 0.57
SHKBP1-217ENST00000598558 RTCBQ9Y3I0 505 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-217ENST00000598558 HMGB2P26583 209 aaKnown RBP18.6■□□□□ 0.57
SHKBP1-217ENST00000598558 CANXP27824 592 aaKnown RBP18.6■□□□□ 0.57
SHKBP1-217ENST00000598558 MSL1Q68DK7 614 aa18.6■□□□□ 0.57
SHKBP1-217ENST00000598558 CFAP44Q96MT7 982 aa18.6■□□□□ 0.57
SHKBP1-217ENST00000598558 MTFR1LQ9H019 292 aa18.6■□□□□ 0.57
SHKBP1-217ENST00000598558 MYH14Q7Z406 1995 aaKnown RBP18.59■□□□□ 0.57
SHKBP1-217ENST00000598558 SOS1Q07889 1333 aaPredicted RBP18.59■□□□□ 0.57
SHKBP1-217ENST00000598558 STARD3NLO95772 234 aa18.59■□□□□ 0.57
SHKBP1-217ENST00000598558 TRAPPC3LQ5T215 181 aa18.59■□□□□ 0.57
SHKBP1-217ENST00000598558 FLAD1Q8NFF5 587 aa18.59■□□□□ 0.57
SHKBP1-217ENST00000598558 SLC16A10Q8TF71 515 aa18.59■□□□□ 0.57
SHKBP1-217ENST00000598558 TEX13AQ9BXU3 409 aaPredicted RBP18.59■□□□□ 0.57
SHKBP1-217ENST00000598558 SPON1Q9HCB6 807 aa18.59■□□□□ 0.57
SHKBP1-217ENST00000598558 MBIPQ9NS73 344 aa18.59■□□□□ 0.57
SHKBP1-217ENST00000598558 NBPF26B4DH59 902 aa18.58■□□□□ 0.56
SHKBP1-217ENST00000598558 NCBP3Q53F19 620 aaKnown RBP18.58■□□□□ 0.56
SHKBP1-217ENST00000598558 NBPF10Q6P3W6 841 aaKnown RBP18.58■□□□□ 0.56
SHKBP1-217ENST00000598558 NBPF15Q8N660 670 aa18.58■□□□□ 0.56
SHKBP1-217ENST00000598558 SRP68Q9UHB9 627 aaKnown RBP18.58■□□□□ 0.56
SHKBP1-217ENST00000598558 KDM3BQ7LBC6 1761 aa18.58■□□□□ 0.56
SHKBP1-217ENST00000598558 UBR3Q6ZT12 1888 aa18.57■□□□□ 0.56
SHKBP1-217ENST00000598558 EIF5P55010 431 aaKnown RBP18.57■□□□□ 0.56
SHKBP1-217ENST00000598558 SPINK5Q9NQ38 1064 aaPredicted RBP18.57■□□□□ 0.56
SHKBP1-217ENST00000598558 IFT57Q9NWB7 429 aa18.57■□□□□ 0.56
SHKBP1-217ENST00000598558 QSER1Q2KHR3 1735 aa18.56■□□□□ 0.56
SHKBP1-217ENST00000598558 SRCAPQ6ZRS2 3230 aa18.55■□□□□ 0.56
SHKBP1-217ENST00000598558 ADRA2BP18089 450 aa18.55■□□□□ 0.56
SHKBP1-217ENST00000598558 GYS1P13807 737 aa18.54■□□□□ 0.56
SHKBP1-217ENST00000598558 GNAI1P63096 354 aa18.54■□□□□ 0.56
SHKBP1-217ENST00000598558 TSR2Q969E8 191 aaKnown RBP18.54■□□□□ 0.56
SHKBP1-217ENST00000598558 RFC4P35249 363 aa18.53■□□□□ 0.56
SHKBP1-217ENST00000598558 BCL2L12Q9HB09 334 aa18.53■□□□□ 0.56
SHKBP1-217ENST00000598558 ZNF521Q96K83 1311 aa18.52■□□□□ 0.56
SHKBP1-217ENST00000598558 USP42Q9H9J4 1324 aaKnown RBP18.52■□□□□ 0.56
SHKBP1-217ENST00000598558 IL6STP40189 918 aaPredicted RBP18.52■□□□□ 0.56
SHKBP1-217ENST00000598558 CALD1Q05682 793 aaKnown RBP18.52■□□□□ 0.56
SHKBP1-217ENST00000598558 FKBP8Q14318 412 aa18.52■□□□□ 0.56
SHKBP1-217ENST00000598558 PDIA6Q15084 440 aa18.52■□□□□ 0.56
SHKBP1-217ENST00000598558 USPL1Q5W0Q7 1092 aa18.52■□□□□ 0.56
SHKBP1-217ENST00000598558 C8orf58Q8NAV2 365 aa18.52■□□□□ 0.56
SHKBP1-217ENST00000598558 NECTIN2Q92692 538 aa18.52■□□□□ 0.56
SHKBP1-217ENST00000598558 COL15A1P39059 1388 aa18.52■□□□□ 0.55
SHKBP1-217ENST00000598558 EIF2S2P20042 333 aaKnown RBP18.51■□□□□ 0.55
SHKBP1-217ENST00000598558 WDR63Q8IWG1 891 aa18.51■□□□□ 0.55
SHKBP1-217ENST00000598558 TBC1D2BQ9UPU7 963 aa18.51■□□□□ 0.55
SHKBP1-217ENST00000598558 IL16Q14005 1332 aa18.5■□□□□ 0.55
SHKBP1-217ENST00000598558 LRP5O75197 1615 aa18.5■□□□□ 0.55
SHKBP1-217ENST00000598558 ELL2O00472 640 aaPredicted RBP18.5■□□□□ 0.55
SHKBP1-217ENST00000598558 ANXA1P04083 346 aa18.5■□□□□ 0.55
SHKBP1-217ENST00000598558 PROSER3Q2NL68 480 aa18.5■□□□□ 0.55
SHKBP1-217ENST00000598558 DUSP27Q5VZP5 1158 aa18.5■□□□□ 0.55
SHKBP1-217ENST00000598558 LRP10Q7Z4F1 713 aa18.5■□□□□ 0.55
SHKBP1-217ENST00000598558 TSPYL6Q8N831 410 aa18.5■□□□□ 0.55
SHKBP1-217ENST00000598558 NARFQ9UHQ1 456 aa18.5■□□□□ 0.55
SHKBP1-217ENST00000598558 ZNF330Q9Y3S2 320 aaPredicted RBP18.5■□□□□ 0.55
SHKBP1-217ENST00000598558 ARXQ96QS3 562 aa18.49■□□□□ 0.55
SHKBP1-217ENST00000598558 NGEFQ8N5V2 710 aa18.48■□□□□ 0.55
SHKBP1-217ENST00000598558 CAMTA2O94983 1202 aa18.47■□□□□ 0.55
SHKBP1-217ENST00000598558 MMP10P09238 476 aa18.47■□□□□ 0.55
SHKBP1-217ENST00000598558 MYL6BP14649 208 aa18.47■□□□□ 0.55
SHKBP1-217ENST00000598558 TM4SF1P30408 202 aa18.47■□□□□ 0.55
SHKBP1-217ENST00000598558 COL24A1Q17RW2 1714 aa18.46■□□□□ 0.55
SHKBP1-217ENST00000598558 A0A087WZG4 1122 aa18.46■□□□□ 0.55
SHKBP1-217ENST00000598558 ZPR1O75312 459 aa18.46■□□□□ 0.55
SHKBP1-217ENST00000598558 DDR1Q08345 913 aa18.46■□□□□ 0.55
SHKBP1-217ENST00000598558 TTLL7Q6ZT98 887 aa18.46■□□□□ 0.55
SHKBP1-217ENST00000598558 DZIP3Q86Y13 1208 aaKnown RBP18.46■□□□□ 0.55
SHKBP1-217ENST00000598558 NLGN1Q8N2Q7 840 aa18.46■□□□□ 0.55
SHKBP1-217ENST00000598558 FANCIQ9NVI1 1328 aa18.46■□□□□ 0.55
SHKBP1-217ENST00000598558 POLD1P28340 1107 aa18.45■□□□□ 0.54
SHKBP1-217ENST00000598558 FHDC1Q9C0D6 1143 aaPredicted RBP18.45■□□□□ 0.54
SHKBP1-217ENST00000598558 PPP1R1BQ9UD71 204 aaPredicted RBP18.45■□□□□ 0.54
SHKBP1-217ENST00000598558 C4AP0C0L4 1744 aa18.45■□□□□ 0.54
SHKBP1-217ENST00000598558 HOXB7P09629 217 aa18.44■□□□□ 0.54
SHKBP1-217ENST00000598558 NFIXQ14938 502 aa18.44■□□□□ 0.54
SHKBP1-217ENST00000598558 HDGFL1Q5TGJ6 251 aa18.44■□□□□ 0.54
SHKBP1-217ENST00000598558 CDCA7LQ96GN5 454 aa18.44■□□□□ 0.54
SHKBP1-217ENST00000598558 CHPF2Q9P2E5 772 aa18.44■□□□□ 0.54
SHKBP1-217ENST00000598558 EXOSC9Q06265 439 aaKnown RBP18.43■□□□□ 0.54
SHKBP1-217ENST00000598558 HLFQ16534 295 aa18.43■□□□□ 0.54
SHKBP1-217ENST00000598558 TBC1D9BQ66K14 1250 aa18.43■□□□□ 0.54
SHKBP1-217ENST00000598558 ERBB4Q15303 1308 aa18.43■□□□□ 0.54
SHKBP1-217ENST00000598558 SYT17Q9BSW7 474 aa18.42■□□□□ 0.54
SHKBP1-217ENST00000598558 DDX21Q9NR30 783 aaKnown RBP eCLIP18.42■□□□□ 0.54
SHKBP1-217ENST00000598558 LAMB4A4D0S4 1761 aa18.41■□□□□ 0.54
SHKBP1-217ENST00000598558 POLRMTO00411 1230 aaKnown RBP18.41■□□□□ 0.54
SHKBP1-217ENST00000598558 TCERG1O14776 1098 aaKnown RBP18.41■□□□□ 0.54
SHKBP1-217ENST00000598558 BICDL1Q6ZP65 573 aa18.41■□□□□ 0.54
SHKBP1-217ENST00000598558 VAMP4O75379 141 aa18.4■□□□□ 0.54
SHKBP1-217ENST00000598558 GOLGA2Q08379 1002 aa18.4■□□□□ 0.54
SHKBP1-217ENST00000598558 SLFN5Q08AF3 891 aa18.4■□□□□ 0.54
SHKBP1-217ENST00000598558 COPS6Q7L5N1 327 aa18.4■□□□□ 0.54
SHKBP1-217ENST00000598558 NLGN2Q8NFZ4 835 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms