RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 ARHGEF1Q92888 912 aaKnown RBP18.23■□□□□ 0.51
UPF1-205ENST00000598209 MIS18AQ9NYP9 233 aa18.23■□□□□ 0.51
UPF1-205ENST00000598209 STARD3NLO95772 234 aa18.22■□□□□ 0.51
UPF1-205ENST00000598209 RFC4P35249 363 aa18.22■□□□□ 0.51
UPF1-205ENST00000598209 TEX13AQ9BXU3 409 aaPredicted RBP18.22■□□□□ 0.51
UPF1-205ENST00000598209 ZBTB1Q9Y2K1 713 aa18.21■□□□□ 0.51
UPF1-205ENST00000598209 SOS1Q07889 1333 aaPredicted RBP18.21■□□□□ 0.51
UPF1-205ENST00000598209 LAMB4A4D0S4 1761 aa18.2■□□□□ 0.5
UPF1-205ENST00000598209 FHDC1Q9C0D6 1143 aaPredicted RBP18.2■□□□□ 0.5
UPF1-205ENST00000598209 APAF1O14727 1248 aa18.19■□□□□ 0.5
UPF1-205ENST00000598209 SNRPA1P09661 255 aaKnown RBP18.19■□□□□ 0.5
UPF1-205ENST00000598209 TRIM35Q9UPQ4 493 aa18.19■□□□□ 0.5
UPF1-205ENST00000598209 PRAMEF22A3QJZ6 481 aa18.18■□□□□ 0.5
UPF1-205ENST00000598209 CANXP27824 592 aaKnown RBP18.18■□□□□ 0.5
UPF1-205ENST00000598209 USP16Q9Y5T5 823 aa18.18■□□□□ 0.5
UPF1-205ENST00000598209 COL15A1P39059 1388 aa18.17■□□□□ 0.5
UPF1-205ENST00000598209 KLHL34Q8N239 644 aa18.17■□□□□ 0.5
UPF1-205ENST00000598209 SYT17Q9BSW7 474 aa18.17■□□□□ 0.5
UPF1-205ENST00000598209 SRP68Q9UHB9 627 aaKnown RBP18.17■□□□□ 0.5
UPF1-205ENST00000598209 TSPYL4Q9UJ04 414 aa18.17■□□□□ 0.5
UPF1-205ENST00000598209 USP42Q9H9J4 1324 aaKnown RBP18.17■□□□□ 0.5
UPF1-205ENST00000598209 A1BGP04217 495 aa18.16■□□□□ 0.5
UPF1-205ENST00000598209 GYS1P13807 737 aa18.16■□□□□ 0.5
UPF1-205ENST00000598209 EIF4A1P60842 406 aaKnown RBP18.16■□□□□ 0.5
UPF1-205ENST00000598209 NLGN1Q8N2Q7 840 aa18.16■□□□□ 0.5
UPF1-205ENST00000598209 EIF5P55010 431 aaKnown RBP18.15■□□□□ 0.5
UPF1-205ENST00000598209 BABAM1Q9NWV8 329 aa18.15■□□□□ 0.5
UPF1-205ENST00000598209 ZPR1O75312 459 aa18.14■□□□□ 0.49
UPF1-205ENST00000598209 MMP10P09238 476 aa18.14■□□□□ 0.49
UPF1-205ENST00000598209 GIGYF1O75420 1035 aaPredicted RBP18.13■□□□□ 0.49
UPF1-205ENST00000598209 IL6STP40189 918 aaPredicted RBP18.13■□□□□ 0.49
UPF1-205ENST00000598209 USPL1Q5W0Q7 1092 aa18.13■□□□□ 0.49
UPF1-205ENST00000598209 NARFQ9UHQ1 456 aa18.13■□□□□ 0.49
UPF1-205ENST00000598209 ZNF330Q9Y3S2 320 aaPredicted RBP18.13■□□□□ 0.49
UPF1-205ENST00000598209 SCN7AQ01118 1682 aa18.12■□□□□ 0.49
UPF1-205ENST00000598209 A0A087WZG4 1122 aa18.12■□□□□ 0.49
UPF1-205ENST00000598209 PIP4K2AP48426 406 aaPredicted RBP18.12■□□□□ 0.49
UPF1-205ENST00000598209 FKBP8Q14318 412 aa18.12■□□□□ 0.49
UPF1-205ENST00000598209 LAS1LQ9Y4W2 734 aaKnown RBP18.12■□□□□ 0.49
UPF1-205ENST00000598209 CHL1O00533 1208 aa18.11■□□□□ 0.49
UPF1-205ENST00000598209 BCORQ6W2J9 1755 aa18.11■□□□□ 0.49
UPF1-205ENST00000598209 KIF13BQ9NQT8 1826 aa18.1■□□□□ 0.49
UPF1-205ENST00000598209 NPM2Q86SE8 214 aaKnown RBP18.1■□□□□ 0.49
UPF1-205ENST00000598209 SENP3-EIF4A1A0A087X0R7 540 aa18.09■□□□□ 0.49
UPF1-205ENST00000598209 NBPF26B4DH59 902 aa18.09■□□□□ 0.49
UPF1-205ENST00000598209 NBPF10Q6P3W6 841 aaKnown RBP18.09■□□□□ 0.49
UPF1-205ENST00000598209 FAM9BQ8IZU0 186 aa18.09■□□□□ 0.49
UPF1-205ENST00000598209 NBPF15Q8N660 670 aa18.09■□□□□ 0.49
UPF1-205ENST00000598209 NLGN2Q8NFZ4 835 aa18.09■□□□□ 0.49
UPF1-205ENST00000598209 BCL2L12Q9HB09 334 aa18.09■□□□□ 0.49
UPF1-205ENST00000598209 CD2APQ9Y5K6 639 aa18.09■□□□□ 0.49
UPF1-205ENST00000598209 PARP3Q9Y6F1 533 aa18.09■□□□□ 0.49
UPF1-205ENST00000598209 AFDNP55196 1824 aaKnown RBP18.09■□□□□ 0.49
UPF1-205ENST00000598209 CALD1Q05682 793 aaKnown RBP18.08■□□□□ 0.48
UPF1-205ENST00000598209 CFAP44Q96MT7 982 aa18.08■□□□□ 0.48
UPF1-205ENST00000598209 TBC1D2BQ9UPU7 963 aa18.08■□□□□ 0.48
UPF1-205ENST00000598209 DCAF8L1A6NGE4 600 aa18.07■□□□□ 0.48
UPF1-205ENST00000598209 TM4SF1P30408 202 aa18.07■□□□□ 0.48
UPF1-205ENST00000598209 DDR1Q08345 913 aa18.07■□□□□ 0.48
UPF1-205ENST00000598209 DZIP3Q86Y13 1208 aaKnown RBP18.07■□□□□ 0.48
UPF1-205ENST00000598209 MBIPQ9NS73 344 aa18.06■□□□□ 0.48
UPF1-205ENST00000598209 IFT57Q9NWB7 429 aa18.06■□□□□ 0.48
UPF1-205ENST00000598209 CAMTA2O94983 1202 aa18.05■□□□□ 0.48
UPF1-205ENST00000598209 ZNF853P0CG23 659 aa18.05■□□□□ 0.48
UPF1-205ENST00000598209 GNAI1P63096 354 aa18.05■□□□□ 0.48
UPF1-205ENST00000598209 NFIXQ14938 502 aa18.05■□□□□ 0.48
UPF1-205ENST00000598209 CCDC27Q2M243 656 aa18.05■□□□□ 0.48
UPF1-205ENST00000598209 KRT24Q2M2I5 525 aa18.05■□□□□ 0.48
UPF1-205ENST00000598209 C10orf71Q711Q0 1435 aa18.05■□□□□ 0.48
UPF1-205ENST00000598209 N4BP2Q86UW6 1770 aaPredicted RBP18.04■□□□□ 0.48
UPF1-205ENST00000598209 KIAA1551Q9HCM1 1747 aa18.04■□□□□ 0.48
UPF1-205ENST00000598209 NRXN2Q9P2S2 1712 aa18.04■□□□□ 0.48
UPF1-205ENST00000598209 POLRMTO00411 1230 aaKnown RBP18.04■□□□□ 0.48
UPF1-205ENST00000598209 EIF2S2P20042 333 aaKnown RBP18.04■□□□□ 0.48
UPF1-205ENST00000598209 WWC1Q8IX03 1113 aa18.04■□□□□ 0.48
UPF1-205ENST00000598209 ERBB4Q15303 1308 aa18.03■□□□□ 0.48
UPF1-205ENST00000598209 NCBP3Q53F19 620 aaKnown RBP18.03■□□□□ 0.48
UPF1-205ENST00000598209 BICDL1Q6ZP65 573 aa18.03■□□□□ 0.48
UPF1-205ENST00000598209 NGEFQ8N5V2 710 aa18.03■□□□□ 0.48
UPF1-205ENST00000598209 NUP98P52948 1817 aa18.02■□□□□ 0.48
UPF1-205ENST00000598209 MYL6BP14649 208 aa18.02■□□□□ 0.48
UPF1-205ENST00000598209 TBC1D9BQ66K14 1250 aa18.02■□□□□ 0.48
UPF1-205ENST00000598209 SALL2Q9Y467 1007 aaPredicted RBP18.02■□□□□ 0.48
UPF1-205ENST00000598209 NECTIN2Q92692 538 aa18.01■□□□□ 0.47
UPF1-205ENST00000598209 CCER2I3L3R5 266 aa18■□□□□ 0.47
UPF1-205ENST00000598209 SERPINB2P05120 415 aa18■□□□□ 0.47
UPF1-205ENST00000598209 HOXB7P09629 217 aa18■□□□□ 0.47
UPF1-205ENST00000598209 GPR162Q16538 588 aa18■□□□□ 0.47
UPF1-205ENST00000598209 DUSP27Q5VZP5 1158 aa18■□□□□ 0.47
UPF1-205ENST00000598209 DIEXFQ68CQ4 756 aaKnown RBP18■□□□□ 0.47
UPF1-205ENST00000598209 PELP1Q8IZL8 1130 aaKnown RBP18■□□□□ 0.47
UPF1-205ENST00000598209 ZNF652Q9Y2D9 606 aa18■□□□□ 0.47
UPF1-205ENST00000598209 PXDNLA1KZ92 1463 aa18■□□□□ 0.47
UPF1-205ENST00000598209 BRCA1P38398 1863 aaKnown RBP17.99■□□□□ 0.47
UPF1-205ENST00000598209 PDIA6Q15084 440 aa17.99■□□□□ 0.47
UPF1-205ENST00000598209 CLEC4GQ6UXB4 293 aa17.99■□□□□ 0.47
UPF1-205ENST00000598209 IL16Q14005 1332 aa17.98■□□□□ 0.47
UPF1-205ENST00000598209 CHD4Q14839 1912 aa17.98■□□□□ 0.47
UPF1-205ENST00000598209 ANXA1P04083 346 aa17.98■□□□□ 0.47
UPF1-205ENST00000598209 TGFB2P61812 414 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms