RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 CCDC87Q9NVE4 849 aa18.63■□□□□ 0.57
VRK3-213ENST00000597215 TFCP2L1Q9NZI6 479 aa18.63■□□□□ 0.57
VRK3-213ENST00000597215 PRAMEF22A3QJZ6 481 aa18.62■□□□□ 0.57
VRK3-213ENST00000597215 GNPATO15228 680 aa18.62■□□□□ 0.57
VRK3-213ENST00000597215 R3HDM1Q15032 1099 aaKnown RBP18.62■□□□□ 0.57
VRK3-213ENST00000597215 FANCIQ9NVI1 1328 aa18.62■□□□□ 0.57
VRK3-213ENST00000597215 E9PSI1 815 aa18.61■□□□□ 0.57
VRK3-213ENST00000597215 SPINK5Q9NQ38 1064 aaPredicted RBP18.61■□□□□ 0.57
VRK3-213ENST00000597215 USP16Q9Y5T5 823 aa18.61■□□□□ 0.57
VRK3-213ENST00000597215 HOXB7P09629 217 aa18.6■□□□□ 0.57
VRK3-213ENST00000597215 KRT24Q2M2I5 525 aa18.6■□□□□ 0.57
VRK3-213ENST00000597215 INTS5Q6P9B9 1019 aaKnown RBP18.6■□□□□ 0.57
VRK3-213ENST00000597215 RTCBQ9Y3I0 505 aaKnown RBP18.6■□□□□ 0.57
VRK3-213ENST00000597215 ZBED9Q6R2W3 1325 aa18.59■□□□□ 0.57
VRK3-213ENST00000597215 PSDA5PKW4 1024 aaPredicted RBP18.59■□□□□ 0.57
VRK3-213ENST00000597215 RPS6KA4O75676 772 aa18.59■□□□□ 0.57
VRK3-213ENST00000597215 SSFA2P28290 1259 aa18.59■□□□□ 0.57
VRK3-213ENST00000597215 DUSP27Q5VZP5 1158 aa18.59■□□□□ 0.57
VRK3-213ENST00000597215 FLAD1Q8NFF5 587 aa18.59■□□□□ 0.57
VRK3-213ENST00000597215 ZBTB1Q9Y2K1 713 aa18.59■□□□□ 0.57
VRK3-213ENST00000597215 SOS1Q07889 1333 aaPredicted RBP18.58■□□□□ 0.57
VRK3-213ENST00000597215 A1BGP04217 495 aa18.58■□□□□ 0.56
VRK3-213ENST00000597215 SLFN5Q08AF3 891 aa18.58■□□□□ 0.56
VRK3-213ENST00000597215 PNPLA7Q6ZV29 1317 aa18.57■□□□□ 0.56
VRK3-213ENST00000597215 PHF14O94880 888 aa18.57■□□□□ 0.56
VRK3-213ENST00000597215 ADRA2BP18089 450 aa18.57■□□□□ 0.56
VRK3-213ENST00000597215 C8orf58Q8NAV2 365 aa18.57■□□□□ 0.56
VRK3-213ENST00000597215 ERBB4Q15303 1308 aa18.56■□□□□ 0.56
VRK3-213ENST00000597215 CASZ1Q86V15 1759 aa18.56■□□□□ 0.56
VRK3-213ENST00000597215 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.56■□□□□ 0.56
VRK3-213ENST00000597215 EIF2S2P20042 333 aaKnown RBP18.56■□□□□ 0.56
VRK3-213ENST00000597215 CANXP27824 592 aaKnown RBP18.56■□□□□ 0.56
VRK3-213ENST00000597215 AMIGO3Q86WK7 504 aa18.56■□□□□ 0.56
VRK3-213ENST00000597215 CDCA7LQ96GN5 454 aa18.56■□□□□ 0.56
VRK3-213ENST00000597215 CHMP4AQ9BY43 222 aa18.56■□□□□ 0.56
VRK3-213ENST00000597215 ELL2O00472 640 aaPredicted RBP18.55■□□□□ 0.56
VRK3-213ENST00000597215 IL6STP40189 918 aaPredicted RBP18.55■□□□□ 0.56
VRK3-213ENST00000597215 EXOSC9Q06265 439 aaKnown RBP18.55■□□□□ 0.56
VRK3-213ENST00000597215 HDGFL1Q5TGJ6 251 aa18.55■□□□□ 0.56
VRK3-213ENST00000597215 COL15A1P39059 1388 aa18.55■□□□□ 0.56
VRK3-213ENST00000597215 MSH5O43196 834 aa18.54■□□□□ 0.56
VRK3-213ENST00000597215 EIF5P55010 431 aaKnown RBP18.54■□□□□ 0.56
VRK3-213ENST00000597215 TWISTNBQ3B726 338 aaPredicted RBP18.54■□□□□ 0.56
VRK3-213ENST00000597215 TRAPPC3LQ5T215 181 aa18.54■□□□□ 0.56
VRK3-213ENST00000597215 NPM2Q86SE8 214 aaKnown RBP18.54■□□□□ 0.56
VRK3-213ENST00000597215 COL23A1Q86Y22 540 aaPredicted RBP18.54■□□□□ 0.56
VRK3-213ENST00000597215 TSPYL6Q8N831 410 aa18.54■□□□□ 0.56
VRK3-213ENST00000597215 C4AP0C0L4 1744 aa18.54■□□□□ 0.56
VRK3-213ENST00000597215 PIP4K2AP48426 406 aaPredicted RBP18.53■□□□□ 0.56
VRK3-213ENST00000597215 SMIM5Q71RC9 77 aa18.53■□□□□ 0.56
VRK3-213ENST00000597215 TRMT2AQ8IZ69 625 aaKnown RBP18.53■□□□□ 0.56
VRK3-213ENST00000597215 NECTIN2Q92692 538 aa18.53■□□□□ 0.56
VRK3-213ENST00000597215 A0A087WZG4 1122 aa18.52■□□□□ 0.56
VRK3-213ENST00000597215 NBPF26B4DH59 902 aa18.52■□□□□ 0.56
VRK3-213ENST00000597215 NBPF10Q6P3W6 841 aaKnown RBP18.52■□□□□ 0.56
VRK3-213ENST00000597215 NBPF15Q8N660 670 aa18.52■□□□□ 0.56
VRK3-213ENST00000597215 ARHGEF1Q92888 912 aaKnown RBP18.52■□□□□ 0.56
VRK3-213ENST00000597215 ZNF330Q9Y3S2 320 aaPredicted RBP18.52■□□□□ 0.56
VRK3-213ENST00000597215 RFC4P35249 363 aa18.51■□□□□ 0.55
VRK3-213ENST00000597215 CCDC30Q5VVM6 783 aa18.51■□□□□ 0.55
VRK3-213ENST00000597215 SLC16A10Q8TF71 515 aa18.51■□□□□ 0.55
VRK3-213ENST00000597215 PDGFDQ9GZP0 370 aaPredicted RBP18.51■□□□□ 0.55
VRK3-213ENST00000597215 DDX21Q9NR30 783 aaKnown RBP eCLIP18.5■□□□□ 0.55
VRK3-213ENST00000597215 DBF4Q9UBU7 674 aaPredicted RBP18.5■□□□□ 0.55
VRK3-213ENST00000597215 MYL6BP14649 208 aa18.49■□□□□ 0.55
VRK3-213ENST00000597215 PDIA6Q15084 440 aa18.49■□□□□ 0.55
VRK3-213ENST00000597215 CHPF2Q9P2E5 772 aa18.49■□□□□ 0.55
VRK3-213ENST00000597215 ZPR1O75312 459 aa18.48■□□□□ 0.55
VRK3-213ENST00000597215 VAMP4O75379 141 aa18.48■□□□□ 0.55
VRK3-213ENST00000597215 STK31Q9BXU1 1019 aa18.48■□□□□ 0.55
VRK3-213ENST00000597215 USP42Q9H9J4 1324 aaKnown RBP18.48■□□□□ 0.55
VRK3-213ENST00000597215 SCN7AQ01118 1682 aa18.47■□□□□ 0.55
VRK3-213ENST00000597215 ANXA1P04083 346 aa18.47■□□□□ 0.55
VRK3-213ENST00000597215 PROSER3Q2NL68 480 aa18.47■□□□□ 0.55
VRK3-213ENST00000597215 DZIP3Q86Y13 1208 aaKnown RBP18.47■□□□□ 0.55
VRK3-213ENST00000597215 YTHDC1Q96MU7 727 aaKnown RBP18.47■□□□□ 0.55
VRK3-213ENST00000597215 ARXQ96QS3 562 aa18.47■□□□□ 0.55
VRK3-213ENST00000597215 MTFR1LQ9H019 292 aa18.47■□□□□ 0.55
VRK3-213ENST00000597215 NARFQ9UHQ1 456 aa18.47■□□□□ 0.55
VRK3-213ENST00000597215 CACNA1FO60840 1977 aa18.46■□□□□ 0.55
VRK3-213ENST00000597215 BCORQ6W2J9 1755 aa18.46■□□□□ 0.55
VRK3-213ENST00000597215 ZBTB7AO95365 584 aa18.46■□□□□ 0.55
VRK3-213ENST00000597215 LRP10Q7Z4F1 713 aa18.46■□□□□ 0.55
VRK3-213ENST00000597215 HYPKQ9NX55 129 aa18.46■□□□□ 0.55
VRK3-213ENST00000597215 SRP68Q9UHB9 627 aaKnown RBP18.46■□□□□ 0.55
VRK3-213ENST00000597215 TBC1D2BQ9UPU7 963 aa18.46■□□□□ 0.55
VRK3-213ENST00000597215 CT47B1P0C2W7 299 aaPredicted RBP18.45■□□□□ 0.54
VRK3-213ENST00000597215 USPL1Q5W0Q7 1092 aa18.45■□□□□ 0.54
VRK3-213ENST00000597215 KIF6Q6ZMV9 814 aa18.45■□□□□ 0.54
VRK3-213ENST00000597215 GYS1P13807 737 aa18.44■□□□□ 0.54
VRK3-213ENST00000597215 ZNF428Q96B54 188 aa18.44■□□□□ 0.54
VRK3-213ENST00000597215 COL24A1Q17RW2 1714 aa18.43■□□□□ 0.54
VRK3-213ENST00000597215 CAMTA2O94983 1202 aa18.43■□□□□ 0.54
VRK3-213ENST00000597215 MSL1Q68DK7 614 aa18.43■□□□□ 0.54
VRK3-213ENST00000597215 TTLL7Q6ZT98 887 aa18.43■□□□□ 0.54
VRK3-213ENST00000597215 XAGE3Q8WTP9 111 aa18.43■□□□□ 0.54
VRK3-213ENST00000597215 SPON1Q9HCB6 807 aa18.43■□□□□ 0.54
VRK3-213ENST00000597215 ATF5Q9Y2D1 282 aaPredicted RBP18.43■□□□□ 0.54
VRK3-213ENST00000597215 TCERG1O14776 1098 aaKnown RBP18.42■□□□□ 0.54
VRK3-213ENST00000597215 RGL2O15211 777 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms