RNA–Protein interactions for RNA: ENST00000596445.5

VRK3-211, Transcript of vaccinia related kinase 3, humanhuman

TSL 5

Gene VRK3, Length 840 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-211ENST00000596445 CCDC87Q9NVE4 849 aa10.85□□□□□ -0.67
VRK3-211ENST00000596445 TFCP2L1Q9NZI6 479 aa10.85□□□□□ -0.67
VRK3-211ENST00000596445 USP16Q9Y5T5 823 aa10.85□□□□□ -0.67
VRK3-211ENST00000596445 E9PSI1 815 aa10.84□□□□□ -0.67
VRK3-211ENST00000596445 GNPATO15228 680 aa10.84□□□□□ -0.67
VRK3-211ENST00000596445 R3HDM1Q15032 1099 aaKnown RBP10.84□□□□□ -0.67
VRK3-211ENST00000596445 INTS5Q6P9B9 1019 aaKnown RBP10.84□□□□□ -0.67
VRK3-211ENST00000596445 TSR2Q969E8 191 aaKnown RBP10.84□□□□□ -0.67
VRK3-211ENST00000596445 SPINK5Q9NQ38 1064 aaPredicted RBP10.84□□□□□ -0.67
VRK3-211ENST00000596445 FANCIQ9NVI1 1328 aa10.84□□□□□ -0.67
VRK3-211ENST00000596445 RPS6KA4O75676 772 aa10.83□□□□□ -0.68
VRK3-211ENST00000596445 HOXB7P09629 217 aa10.83□□□□□ -0.68
VRK3-211ENST00000596445 SSFA2P28290 1259 aa10.83□□□□□ -0.68
VRK3-211ENST00000596445 KRT24Q2M2I5 525 aa10.83□□□□□ -0.68
VRK3-211ENST00000596445 FLAD1Q8NFF5 587 aa10.83□□□□□ -0.68
VRK3-211ENST00000596445 RTCBQ9Y3I0 505 aaKnown RBP10.83□□□□□ -0.68
VRK3-211ENST00000596445 SOS1Q07889 1333 aaPredicted RBP10.83□□□□□ -0.68
VRK3-211ENST00000596445 ZBED9Q6R2W3 1325 aa10.83□□□□□ -0.68
VRK3-211ENST00000596445 SRCAPQ6ZRS2 3230 aa10.82□□□□□ -0.68
VRK3-211ENST00000596445 PSDA5PKW4 1024 aaPredicted RBP10.82□□□□□ -0.68
VRK3-211ENST00000596445 A1BGP04217 495 aa10.82□□□□□ -0.68
VRK3-211ENST00000596445 SLFN5Q08AF3 891 aa10.82□□□□□ -0.68
VRK3-211ENST00000596445 DUSP27Q5VZP5 1158 aa10.82□□□□□ -0.68
VRK3-211ENST00000596445 AMIGO3Q86WK7 504 aa10.82□□□□□ -0.68
VRK3-211ENST00000596445 C8orf58Q8NAV2 365 aa10.82□□□□□ -0.68
VRK3-211ENST00000596445 ZBTB1Q9Y2K1 713 aa10.82□□□□□ -0.68
VRK3-211ENST00000596445 CASZ1Q86V15 1759 aa10.82□□□□□ -0.68
VRK3-211ENST00000596445 PNPLA7Q6ZV29 1317 aa10.82□□□□□ -0.68
VRK3-211ENST00000596445 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.81□□□□□ -0.68
VRK3-211ENST00000596445 ADRA2BP18089 450 aa10.81□□□□□ -0.68
VRK3-211ENST00000596445 EIF2S2P20042 333 aaKnown RBP10.81□□□□□ -0.68
VRK3-211ENST00000596445 CANXP27824 592 aaKnown RBP10.81□□□□□ -0.68
VRK3-211ENST00000596445 TRMT2AQ8IZ69 625 aaKnown RBP10.81□□□□□ -0.68
VRK3-211ENST00000596445 CDCA7LQ96GN5 454 aa10.81□□□□□ -0.68
VRK3-211ENST00000596445 CHMP4AQ9BY43 222 aa10.81□□□□□ -0.68
VRK3-211ENST00000596445 ERBB4Q15303 1308 aa10.81□□□□□ -0.68
VRK3-211ENST00000596445 C4AP0C0L4 1744 aa10.81□□□□□ -0.68
VRK3-211ENST00000596445 CACNA1FO60840 1977 aa10.8□□□□□ -0.68
VRK3-211ENST00000596445 NBPF26B4DH59 902 aa10.8□□□□□ -0.68
VRK3-211ENST00000596445 ELL2O00472 640 aaPredicted RBP10.8□□□□□ -0.68
VRK3-211ENST00000596445 PHF14O94880 888 aa10.8□□□□□ -0.68
VRK3-211ENST00000596445 IL6STP40189 918 aaPredicted RBP10.8□□□□□ -0.68
VRK3-211ENST00000596445 EIF5P55010 431 aaKnown RBP10.8□□□□□ -0.68
VRK3-211ENST00000596445 EXOSC9Q06265 439 aaKnown RBP10.8□□□□□ -0.68
VRK3-211ENST00000596445 TRAPPC3LQ5T215 181 aa10.8□□□□□ -0.68
VRK3-211ENST00000596445 HDGFL1Q5TGJ6 251 aa10.8□□□□□ -0.68
VRK3-211ENST00000596445 NBPF10Q6P3W6 841 aaKnown RBP10.8□□□□□ -0.68
VRK3-211ENST00000596445 COL23A1Q86Y22 540 aaPredicted RBP10.8□□□□□ -0.68
VRK3-211ENST00000596445 NBPF15Q8N660 670 aa10.8□□□□□ -0.68
VRK3-211ENST00000596445 TSPYL6Q8N831 410 aa10.8□□□□□ -0.68
VRK3-211ENST00000596445 COL15A1P39059 1388 aa10.79□□□□□ -0.68
VRK3-211ENST00000596445 A0A087WZG4 1122 aa10.79□□□□□ -0.68
VRK3-211ENST00000596445 PIP4K2AP48426 406 aaPredicted RBP10.79□□□□□ -0.68
VRK3-211ENST00000596445 TWISTNBQ3B726 338 aaPredicted RBP10.79□□□□□ -0.68
VRK3-211ENST00000596445 SMIM5Q71RC9 77 aa10.79□□□□□ -0.68
VRK3-211ENST00000596445 SLC16A10Q8TF71 515 aa10.79□□□□□ -0.68
VRK3-211ENST00000596445 NECTIN2Q92692 538 aa10.79□□□□□ -0.68
VRK3-211ENST00000596445 ARHGEF1Q92888 912 aaKnown RBP10.79□□□□□ -0.68
VRK3-211ENST00000596445 PDGFDQ9GZP0 370 aaPredicted RBP10.79□□□□□ -0.68
VRK3-211ENST00000596445 MSH5O43196 834 aa10.78□□□□□ -0.68
VRK3-211ENST00000596445 RFC4P35249 363 aa10.78□□□□□ -0.68
VRK3-211ENST00000596445 PDIA6Q15084 440 aa10.78□□□□□ -0.68
VRK3-211ENST00000596445 CCDC30Q5VVM6 783 aa10.78□□□□□ -0.68
VRK3-211ENST00000596445 NPM2Q86SE8 214 aaKnown RBP10.78□□□□□ -0.68
VRK3-211ENST00000596445 VAMP4O75379 141 aa10.77□□□□□ -0.69
VRK3-211ENST00000596445 MYL6BP14649 208 aa10.77□□□□□ -0.69
VRK3-211ENST00000596445 DDX21Q9NR30 783 aaKnown RBP eCLIP10.77□□□□□ -0.69
VRK3-211ENST00000596445 CHPF2Q9P2E5 772 aa10.77□□□□□ -0.69
VRK3-211ENST00000596445 DBF4Q9UBU7 674 aaPredicted RBP10.77□□□□□ -0.69
VRK3-211ENST00000596445 ZNF330Q9Y3S2 320 aaPredicted RBP10.77□□□□□ -0.69
VRK3-211ENST00000596445 COL24A1Q17RW2 1714 aa10.76□□□□□ -0.69
VRK3-211ENST00000596445 ZPR1O75312 459 aa10.76□□□□□ -0.69
VRK3-211ENST00000596445 PROSER3Q2NL68 480 aa10.76□□□□□ -0.69
VRK3-211ENST00000596445 LRP10Q7Z4F1 713 aa10.76□□□□□ -0.69
VRK3-211ENST00000596445 MTFR1LQ9H019 292 aa10.76□□□□□ -0.69
VRK3-211ENST00000596445 HYPKQ9NX55 129 aa10.76□□□□□ -0.69
VRK3-211ENST00000596445 NARFQ9UHQ1 456 aa10.76□□□□□ -0.69
VRK3-211ENST00000596445 USP42Q9H9J4 1324 aaKnown RBP10.76□□□□□ -0.69
VRK3-211ENST00000596445 BCORQ6W2J9 1755 aa10.75□□□□□ -0.69
VRK3-211ENST00000596445 ZBTB7AO95365 584 aa10.75□□□□□ -0.69
VRK3-211ENST00000596445 ANXA1P04083 346 aa10.75□□□□□ -0.69
VRK3-211ENST00000596445 CT47B1P0C2W7 299 aaPredicted RBP10.75□□□□□ -0.69
VRK3-211ENST00000596445 GYS1P13807 737 aa10.75□□□□□ -0.69
VRK3-211ENST00000596445 DZIP3Q86Y13 1208 aaKnown RBP10.75□□□□□ -0.69
VRK3-211ENST00000596445 ZNF428Q96B54 188 aa10.75□□□□□ -0.69
VRK3-211ENST00000596445 ARXQ96QS3 562 aa10.75□□□□□ -0.69
VRK3-211ENST00000596445 STK31Q9BXU1 1019 aa10.75□□□□□ -0.69
VRK3-211ENST00000596445 SRP68Q9UHB9 627 aaKnown RBP10.75□□□□□ -0.69
VRK3-211ENST00000596445 TBC1D2BQ9UPU7 963 aa10.75□□□□□ -0.69
VRK3-211ENST00000596445 SCN7AQ01118 1682 aa10.75□□□□□ -0.69
VRK3-211ENST00000596445 RGL2O15211 777 aa10.74□□□□□ -0.69
VRK3-211ENST00000596445 USPL1Q5W0Q7 1092 aa10.74□□□□□ -0.69
VRK3-211ENST00000596445 KIF6Q6ZMV9 814 aa10.74□□□□□ -0.69
VRK3-211ENST00000596445 TTLL7Q6ZT98 887 aa10.74□□□□□ -0.69
VRK3-211ENST00000596445 NLGN1Q8N2Q7 840 aa10.74□□□□□ -0.69
VRK3-211ENST00000596445 YTHDC1Q96MU7 727 aaKnown RBP10.74□□□□□ -0.69
VRK3-211ENST00000596445 NUP98P52948 1817 aa10.74□□□□□ -0.69
VRK3-211ENST00000596445 ERVV-1B6SEH8 477 aa10.73□□□□□ -0.69
VRK3-211ENST00000596445 CAMTA2O94983 1202 aa10.73□□□□□ -0.69
VRK3-211ENST00000596445 SLC4A2P04920 1241 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms