RNA–Protein interactions for RNA: ENST00000595631.5

SHKBP1-207, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-207ENST00000595631 PTGER2P43116 358 aa18.07■□□□□ 0.48
SHKBP1-207ENST00000595631 MIER1Q8N108 512 aa18.07■□□□□ 0.48
SHKBP1-207ENST00000595631 LAS1LQ9Y4W2 734 aaKnown RBP18.07■□□□□ 0.48
SHKBP1-207ENST00000595631 EIF4A1P60842 406 aaKnown RBP18.06■□□□□ 0.48
SHKBP1-207ENST00000595631 FLAD1Q8NFF5 587 aa18.06■□□□□ 0.48
SHKBP1-207ENST00000595631 USP16Q9Y5T5 823 aa18.06■□□□□ 0.48
SHKBP1-207ENST00000595631 SOS1Q07889 1333 aaPredicted RBP18.05■□□□□ 0.48
SHKBP1-207ENST00000595631 CCER2I3L3R5 266 aa18.05■□□□□ 0.48
SHKBP1-207ENST00000595631 PIP4K2AP48426 406 aaPredicted RBP18.05■□□□□ 0.48
SHKBP1-207ENST00000595631 SLC16A10Q8TF71 515 aa18.05■□□□□ 0.48
SHKBP1-207ENST00000595631 ARHGEF1Q92888 912 aaKnown RBP18.05■□□□□ 0.48
SHKBP1-207ENST00000595631 SGIP1Q9BQI5 828 aa18.05■□□□□ 0.48
SHKBP1-207ENST00000595631 SALL2Q9Y467 1007 aaPredicted RBP18.05■□□□□ 0.48
SHKBP1-207ENST00000595631 STARD3NLO95772 234 aa18.04■□□□□ 0.48
SHKBP1-207ENST00000595631 A1BGP04217 495 aa18.04■□□□□ 0.48
SHKBP1-207ENST00000595631 SNRPA1P09661 255 aaKnown RBP18.04■□□□□ 0.48
SHKBP1-207ENST00000595631 CANXP27824 592 aaKnown RBP18.04■□□□□ 0.48
SHKBP1-207ENST00000595631 TRAPPC3LQ5T215 181 aa18.04■□□□□ 0.48
SHKBP1-207ENST00000595631 BCORQ6W2J9 1755 aa18.04■□□□□ 0.48
SHKBP1-207ENST00000595631 SCN7AQ01118 1682 aa18.03■□□□□ 0.48
SHKBP1-207ENST00000595631 TEX13AQ9BXU3 409 aaPredicted RBP18.03■□□□□ 0.48
SHKBP1-207ENST00000595631 COL15A1P39059 1388 aa18.03■□□□□ 0.48
SHKBP1-207ENST00000595631 CHL1O00533 1208 aa18.02■□□□□ 0.48
SHKBP1-207ENST00000595631 GIGYF1O75420 1035 aaPredicted RBP18.02■□□□□ 0.48
SHKBP1-207ENST00000595631 KRT24Q2M2I5 525 aa18.02■□□□□ 0.48
SHKBP1-207ENST00000595631 SRP68Q9UHB9 627 aaKnown RBP18.02■□□□□ 0.48
SHKBP1-207ENST00000595631 ADRA2BP18089 450 aa18.01■□□□□ 0.47
SHKBP1-207ENST00000595631 RFC4P35249 363 aa18.01■□□□□ 0.47
SHKBP1-207ENST00000595631 WWC1Q8IX03 1113 aa18.01■□□□□ 0.47
SHKBP1-207ENST00000595631 BABAM1Q9NWV8 329 aa18.01■□□□□ 0.47
SHKBP1-207ENST00000595631 ZNF853P0CG23 659 aa18■□□□□ 0.47
SHKBP1-207ENST00000595631 CFAP44Q96MT7 982 aa18■□□□□ 0.47
SHKBP1-207ENST00000595631 MBIPQ9NS73 344 aa18■□□□□ 0.47
SHKBP1-207ENST00000595631 PPP1R1BQ9UD71 204 aaPredicted RBP18■□□□□ 0.47
SHKBP1-207ENST00000595631 ZNF330Q9Y3S2 320 aaPredicted RBP18■□□□□ 0.47
SHKBP1-207ENST00000595631 CCDC27Q2M243 656 aa17.99■□□□□ 0.47
SHKBP1-207ENST00000595631 AFDNP55196 1824 aaKnown RBP17.99■□□□□ 0.47
SHKBP1-207ENST00000595631 USP42Q9H9J4 1324 aaKnown RBP17.98■□□□□ 0.47
SHKBP1-207ENST00000595631 NBPF26B4DH59 902 aa17.98■□□□□ 0.47
SHKBP1-207ENST00000595631 GYS1P13807 737 aa17.98■□□□□ 0.47
SHKBP1-207ENST00000595631 EIF5P55010 431 aaKnown RBP17.98■□□□□ 0.47
SHKBP1-207ENST00000595631 NBPF10Q6P3W6 841 aaKnown RBP17.98■□□□□ 0.47
SHKBP1-207ENST00000595631 NBPF15Q8N660 670 aa17.98■□□□□ 0.47
SHKBP1-207ENST00000595631 IFT57Q9NWB7 429 aa17.98■□□□□ 0.47
SHKBP1-207ENST00000595631 POLD1P28340 1107 aa17.97■□□□□ 0.47
SHKBP1-207ENST00000595631 GNAI1P63096 354 aa17.97■□□□□ 0.47
SHKBP1-207ENST00000595631 CALD1Q05682 793 aaKnown RBP17.97■□□□□ 0.47
SHKBP1-207ENST00000595631 ARXQ96QS3 562 aa17.97■□□□□ 0.47
SHKBP1-207ENST00000595631 NUP98P52948 1817 aa17.97■□□□□ 0.47
SHKBP1-207ENST00000595631 IL6STP40189 918 aaPredicted RBP17.96■□□□□ 0.47
SHKBP1-207ENST00000595631 USPL1Q5W0Q7 1092 aa17.96■□□□□ 0.47
SHKBP1-207ENST00000595631 NECTIN2Q92692 538 aa17.96■□□□□ 0.47
SHKBP1-207ENST00000595631 EIF2S2P20042 333 aaKnown RBP17.95■□□□□ 0.46
SHKBP1-207ENST00000595631 FKBP8Q14318 412 aa17.95■□□□□ 0.46
SHKBP1-207ENST00000595631 TSR2Q969E8 191 aaKnown RBP17.95■□□□□ 0.46
SHKBP1-207ENST00000595631 NARFQ9UHQ1 456 aa17.95■□□□□ 0.46
SHKBP1-207ENST00000595631 TBC1D2BQ9UPU7 963 aa17.95■□□□□ 0.46
SHKBP1-207ENST00000595631 KIF13BQ9NQT8 1826 aa17.95■□□□□ 0.46
SHKBP1-207ENST00000595631 ZPR1O75312 459 aa17.94■□□□□ 0.46
SHKBP1-207ENST00000595631 NCBP3Q53F19 620 aaKnown RBP17.94■□□□□ 0.46
SHKBP1-207ENST00000595631 KLHL34Q8N239 644 aa17.94■□□□□ 0.46
SHKBP1-207ENST00000595631 FHDC1Q9C0D6 1143 aaPredicted RBP17.94■□□□□ 0.46
SHKBP1-207ENST00000595631 BCL2L12Q9HB09 334 aa17.94■□□□□ 0.46
SHKBP1-207ENST00000595631 ANXA1P04083 346 aa17.93■□□□□ 0.46
SHKBP1-207ENST00000595631 MMP10P09238 476 aa17.93■□□□□ 0.46
SHKBP1-207ENST00000595631 NGEFQ8N5V2 710 aa17.93■□□□□ 0.46
SHKBP1-207ENST00000595631 SRCAPQ6ZRS2 3230 aa17.93■□□□□ 0.46
SHKBP1-207ENST00000595631 KIAA1551Q9HCM1 1747 aa17.92■□□□□ 0.46
SHKBP1-207ENST00000595631 N4BP2Q86UW6 1770 aaPredicted RBP17.92■□□□□ 0.46
SHKBP1-207ENST00000595631 A0A087WZG4 1122 aa17.92■□□□□ 0.46
SHKBP1-207ENST00000595631 ELL2O00472 640 aaPredicted RBP17.92■□□□□ 0.46
SHKBP1-207ENST00000595631 MYL6BP14649 208 aa17.92■□□□□ 0.46
SHKBP1-207ENST00000595631 PROSER3Q2NL68 480 aa17.92■□□□□ 0.46
SHKBP1-207ENST00000595631 DUSP27Q5VZP5 1158 aa17.92■□□□□ 0.46
SHKBP1-207ENST00000595631 NLGN1Q8N2Q7 840 aa17.92■□□□□ 0.46
SHKBP1-207ENST00000595631 C8orf58Q8NAV2 365 aa17.92■□□□□ 0.46
SHKBP1-207ENST00000595631 SPINK5Q9NQ38 1064 aaPredicted RBP17.92■□□□□ 0.46
SHKBP1-207ENST00000595631 NRXN2Q9P2S2 1712 aa17.92■□□□□ 0.46
SHKBP1-207ENST00000595631 DDR1Q08345 913 aa17.91■□□□□ 0.46
SHKBP1-207ENST00000595631 DZIP3Q86Y13 1208 aaKnown RBP17.91■□□□□ 0.46
SHKBP1-207ENST00000595631 IL16Q14005 1332 aa17.91■□□□□ 0.46
SHKBP1-207ENST00000595631 ANKRD36CQ5JPF3 1778 aa17.91■□□□□ 0.46
SHKBP1-207ENST00000595631 CAMTA2O94983 1202 aa17.9■□□□□ 0.46
SHKBP1-207ENST00000595631 PDIA6Q15084 440 aa17.9■□□□□ 0.46
SHKBP1-207ENST00000595631 WDR63Q8IWG1 891 aa17.9■□□□□ 0.46
SHKBP1-207ENST00000595631 ZNF521Q96K83 1311 aa17.9■□□□□ 0.46
SHKBP1-207ENST00000595631 FANCIQ9NVI1 1328 aa17.9■□□□□ 0.46
SHKBP1-207ENST00000595631 NPM2Q86SE8 214 aaKnown RBP17.89■□□□□ 0.45
SHKBP1-207ENST00000595631 TSPYL6Q8N831 410 aa17.89■□□□□ 0.45
SHKBP1-207ENST00000595631 SYT17Q9BSW7 474 aa17.89■□□□□ 0.45
SHKBP1-207ENST00000595631 NFIXQ14938 502 aa17.88■□□□□ 0.45
SHKBP1-207ENST00000595631 HDGFL1Q5TGJ6 251 aa17.88■□□□□ 0.45
SHKBP1-207ENST00000595631 BICDL1Q6ZP65 573 aa17.88■□□□□ 0.45
SHKBP1-207ENST00000595631 TTLL7Q6ZT98 887 aa17.88■□□□□ 0.45
SHKBP1-207ENST00000595631 LRP10Q7Z4F1 713 aa17.88■□□□□ 0.45
SHKBP1-207ENST00000595631 CHPF2Q9P2E5 772 aa17.88■□□□□ 0.45
SHKBP1-207ENST00000595631 ERBB4Q15303 1308 aa17.88■□□□□ 0.45
SHKBP1-207ENST00000595631 ANKRD31Q8N7Z5 1873 aa17.88■□□□□ 0.45
SHKBP1-207ENST00000595631 ARFGEF2Q9Y6D5 1785 aa17.87■□□□□ 0.45
SHKBP1-207ENST00000595631 HOXB7P09629 217 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms