RNA–Protein interactions for RNA: ENST00000595081.5

PNKP-205, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 2

Gene PNKP, Length 513 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-205	ENST00000595081	ZNF853	P0CG23	659 aa		29.86	■■■□□ 2.37
PNKP-205	ENST00000595081	TEX13A	Q9BXU3	409 aa	Predicted RBP	29.86	■■■□□ 2.37
PNKP-205	ENST00000595081	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	29.85	■■■□□ 2.37
PNKP-205	ENST00000595081	MBIP	Q9NS73	344 aa		29.85	■■■□□ 2.37
PNKP-205	ENST00000595081	RTCB	Q9Y3I0	505 aa	Known RBP	29.85	■■■□□ 2.37
PNKP-205	ENST00000595081	USP16	Q9Y5T5	823 aa		29.85	■■■□□ 2.37
PNKP-205	ENST00000595081	MSH5	O43196	834 aa		29.84	■■■□□ 2.37
PNKP-205	ENST00000595081	GIGYF1	O75420	1035 aa	Predicted RBP	29.84	■■■□□ 2.37
PNKP-205	ENST00000595081	GNAI1	P63096	354 aa		29.84	■■■□□ 2.37
PNKP-205	ENST00000595081	ZBTB1	Q9Y2K1	713 aa		29.84	■■■□□ 2.37
PNKP-205	ENST00000595081	RPS6KA4	O75676	772 aa		29.83	■■■□□ 2.37
PNKP-205	ENST00000595081	SSFA2	P28290	1259 aa		29.83	■■■□□ 2.37
PNKP-205	ENST00000595081	ZBTB7A	O95365	584 aa		29.82	■■■□□ 2.36
PNKP-205	ENST00000595081	KRT24	Q2M2I5	525 aa		29.82	■■■□□ 2.36
PNKP-205	ENST00000595081	NGEF	Q8N5V2	710 aa		29.82	■■■□□ 2.36
PNKP-205	ENST00000595081	FLAD1	Q8NFF5	587 aa		29.81	■■■□□ 2.36
PNKP-205	ENST00000595081	A1BG	P04217	495 aa		29.8	■■■□□ 2.36
PNKP-205	ENST00000595081	CANX	P27824	592 aa	Known RBP	29.8	■■■□□ 2.36
PNKP-205	ENST00000595081	WDR63	Q8IWG1	891 aa		29.79	■■■□□ 2.36
PNKP-205	ENST00000595081	SOS1	Q07889	1333 aa	Predicted RBP	29.78	■■■□□ 2.36
PNKP-205	ENST00000595081	IL16	Q14005	1332 aa		29.78	■■■□□ 2.36
PNKP-205	ENST00000595081	PIP4K2A	P48426	406 aa	Predicted RBP	29.78	■■■□□ 2.36
PNKP-205	ENST00000595081	TRAPPC3L	Q5T215	181 aa		29.78	■■■□□ 2.36
PNKP-205	ENST00000595081	TSR2	Q969E8	191 aa	Known RBP	29.78	■■■□□ 2.36
PNKP-205	ENST00000595081	SRCAP	Q6ZRS2	3230 aa		29.78	■■■□□ 2.36
PNKP-205	ENST00000595081	ARHGEF1	Q92888	912 aa	Known RBP	29.77	■■■□□ 2.36
PNKP-205	ENST00000595081	LAMB4	A4D0S4	1761 aa		29.77	■■■□□ 2.36
PNKP-205	ENST00000595081	ZNF521	Q96K83	1311 aa		29.76	■■■□□ 2.36
PNKP-205	ENST00000595081	ADRA2B	P18089	450 aa		29.76	■■■□□ 2.35
PNKP-205	ENST00000595081	ATF5	Q9Y2D1	282 aa	Predicted RBP	29.76	■■■□□ 2.35
PNKP-205	ENST00000595081	MTFR1L	Q9H019	292 aa		29.75	■■■□□ 2.35
PNKP-205	ENST00000595081	SLC16A10	Q8TF71	515 aa		29.74	■■■□□ 2.35
PNKP-205	ENST00000595081	SPINK5	Q9NQ38	1064 aa	Predicted RBP	29.74	■■■□□ 2.35
PNKP-205	ENST00000595081	MSL1	Q68DK7	614 aa		29.73	■■■□□ 2.35
PNKP-205	ENST00000595081	ZNF330	Q9Y3S2	320 aa	Predicted RBP	29.73	■■■□□ 2.35
PNKP-205	ENST00000595081	COL15A1	P39059	1388 aa		29.73	■■■□□ 2.35
PNKP-205	ENST00000595081	NBPF26	B4DH59	902 aa		29.72	■■■□□ 2.35
PNKP-205	ENST00000595081	EIF2S2	P20042	333 aa	Known RBP	29.72	■■■□□ 2.35
PNKP-205	ENST00000595081	RFC4	P35249	363 aa		29.72	■■■□□ 2.35
PNKP-205	ENST00000595081	EIF5	P55010	431 aa	Known RBP	29.72	■■■□□ 2.35
PNKP-205	ENST00000595081	NBPF10	Q6P3W6	841 aa	Known RBP	29.72	■■■□□ 2.35
PNKP-205	ENST00000595081	NBPF15	Q8N660	670 aa		29.72	■■■□□ 2.35
PNKP-205	ENST00000595081	SPON1	Q9HCB6	807 aa		29.72	■■■□□ 2.35
PNKP-205	ENST00000595081	C4A	P0C0L4	1744 aa		29.71	■■■□□ 2.35
PNKP-205	ENST00000595081	DUSP27	Q5VZP5	1158 aa		29.71	■■■□□ 2.35
PNKP-205	ENST00000595081	FANCI	Q9NVI1	1328 aa		29.71	■■■□□ 2.35
PNKP-205	ENST00000595081	IL6ST	P40189	918 aa	Predicted RBP	29.7	■■■□□ 2.35
PNKP-205	ENST00000595081	C8orf58	Q8NAV2	365 aa		29.7	■■■□□ 2.35
PNKP-205	ENST00000595081	NECTIN2	Q92692	538 aa		29.7	■■■□□ 2.35
PNKP-205	ENST00000595081	SRP68	Q9UHB9	627 aa	Known RBP	29.7	■■■□□ 2.35
PNKP-205	ENST00000595081	ELL2	O00472	640 aa	Predicted RBP	29.69	■■■□□ 2.34
PNKP-205	ENST00000595081	PTGER2	P43116	358 aa		29.67	■■■□□ 2.34
PNKP-205	ENST00000595081	USP42	Q9H9J4	1324 aa	Known RBP	29.67	■■■□□ 2.34
PNKP-205	ENST00000595081	HOXB7	P09629	217 aa		29.66	■■■□□ 2.34
PNKP-205	ENST00000595081	TSPYL6	Q8N831	410 aa		29.66	■■■□□ 2.34
PNKP-205	ENST00000595081	LRP5	O75197	1615 aa		29.65	■■■□□ 2.34
PNKP-205	ENST00000595081	MYL6B	P14649	208 aa		29.65	■■■□□ 2.34
PNKP-205	ENST00000595081	HNRNPU	Q00839	825 aa	Known RBP eCLIP	29.65	■■■□□ 2.34
PNKP-205	ENST00000595081	HDGFL1	Q5TGJ6	251 aa		29.65	■■■□□ 2.34
PNKP-205	ENST00000595081		A0A087WZG4	1122 aa		29.64	■■■□□ 2.34
PNKP-205	ENST00000595081	GYS1	P13807	737 aa		29.64	■■■□□ 2.34
PNKP-205	ENST00000595081	GOLGA2	Q08379	1002 aa		29.64	■■■□□ 2.34
PNKP-205	ENST00000595081	NPM2	Q86SE8	214 aa	Known RBP	29.64	■■■□□ 2.34
PNKP-205	ENST00000595081	ARX	Q96QS3	562 aa		29.64	■■■□□ 2.34
PNKP-205	ENST00000595081	SGIP1	Q9BQI5	828 aa		29.64	■■■□□ 2.34
PNKP-205	ENST00000595081	MYH16	Q9H6N6	1097 aa		29.64	■■■□□ 2.34
PNKP-205	ENST00000595081	TBC1D2B	Q9UPU7	963 aa		29.64	■■■□□ 2.34
PNKP-205	ENST00000595081	ZPR1	O75312	459 aa		29.63	■■■□□ 2.33
PNKP-205	ENST00000595081	PROSER3	Q2NL68	480 aa		29.63	■■■□□ 2.33
PNKP-205	ENST00000595081	USPL1	Q5W0Q7	1092 aa		29.63	■■■□□ 2.33
PNKP-205	ENST00000595081	NARF	Q9UHQ1	456 aa		29.63	■■■□□ 2.33
PNKP-205	ENST00000595081	ERBB4	Q15303	1308 aa		29.63	■■■□□ 2.33
PNKP-205	ENST00000595081	ANXA1	P04083	346 aa		29.62	■■■□□ 2.33
PNKP-205	ENST00000595081	PDIA6	Q15084	440 aa		29.62	■■■□□ 2.33
PNKP-205	ENST00000595081	CDCA7L	Q96GN5	454 aa		29.61	■■■□□ 2.33
PNKP-205	ENST00000595081	COL24A1	Q17RW2	1714 aa		29.6	■■■□□ 2.33
PNKP-205	ENST00000595081	EXOSC9	Q06265	439 aa	Known RBP	29.6	■■■□□ 2.33
PNKP-205	ENST00000595081	FKBP8	Q14318	412 aa		29.6	■■■□□ 2.33
PNKP-205	ENST00000595081	DZIP3	Q86Y13	1208 aa	Known RBP	29.6	■■■□□ 2.33
PNKP-205	ENST00000595081	CHPF2	Q9P2E5	772 aa		29.6	■■■□□ 2.33
PNKP-205	ENST00000595081	POLD1	P28340	1107 aa		29.59	■■■□□ 2.33
PNKP-205	ENST00000595081	BCL2L12	Q9HB09	334 aa		29.59	■■■□□ 2.33
PNKP-205	ENST00000595081		E9PSI1	815 aa		29.58	■■■□□ 2.33
PNKP-205	ENST00000595081	TWISTNB	Q3B726	338 aa	Predicted RBP	29.58	■■■□□ 2.33
PNKP-205	ENST00000595081	LRP10	Q7Z4F1	713 aa		29.58	■■■□□ 2.33
PNKP-205	ENST00000595081	NLGN1	Q8N2Q7	840 aa		29.58	■■■□□ 2.33
PNKP-205	ENST00000595081	CAMTA2	O94983	1202 aa		29.57	■■■□□ 2.32
PNKP-205	ENST00000595081	SLFN5	Q08AF3	891 aa		29.57	■■■□□ 2.32
PNKP-205	ENST00000595081	MMP10	P09238	476 aa		29.56	■■■□□ 2.32
PNKP-205	ENST00000595081	TTLL7	Q6ZT98	887 aa		29.56	■■■□□ 2.32
PNKP-205	ENST00000595081	DDX21	Q9NR30	783 aa	Known RBP eCLIP	29.56	■■■□□ 2.32
PNKP-205	ENST00000595081	PPP1R1B	Q9UD71	204 aa	Predicted RBP	29.56	■■■□□ 2.32
PNKP-205	ENST00000595081	SCN7A	Q01118	1682 aa		29.56	■■■□□ 2.32
PNKP-205	ENST00000595081	DBF4	Q9UBU7	674 aa	Predicted RBP	29.54	■■■□□ 2.32
PNKP-205	ENST00000595081	TCERG1	O14776	1098 aa	Known RBP	29.52	■■■□□ 2.32
PNKP-205	ENST00000595081	CCDC30	Q5VVM6	783 aa		29.52	■■■□□ 2.32
PNKP-205	ENST00000595081	BCOR	Q6W2J9	1755 aa		29.52	■■■□□ 2.32
PNKP-205	ENST00000595081	VAMP4	O75379	141 aa		29.51	■■■□□ 2.31
PNKP-205	ENST00000595081	KIF6	Q6ZMV9	814 aa		29.51	■■■□□ 2.31
PNKP-205	ENST00000595081	XAGE3	Q8WTP9	111 aa		29.51	■■■□□ 2.31

Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms