RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 UBR3Q6ZT12 1888 aa19.69■□□□□ 0.74
UPF1-202ENST00000594243 RFC4P35249 363 aa19.68■□□□□ 0.74
UPF1-202ENST00000594243 SGIP1Q9BQI5 828 aa19.68■□□□□ 0.74
UPF1-202ENST00000594243 TSPYL4Q9UJ04 414 aa19.67■□□□□ 0.74
UPF1-202ENST00000594243 CALD1Q05682 793 aaKnown RBP19.66■□□□□ 0.74
UPF1-202ENST00000594243 FAM9BQ8IZU0 186 aa19.66■□□□□ 0.74
UPF1-202ENST00000594243 CANXP27824 592 aaKnown RBP19.65■□□□□ 0.74
UPF1-202ENST00000594243 EIF4A1P60842 406 aaKnown RBP19.65■□□□□ 0.74
UPF1-202ENST00000594243 ARXQ96QS3 562 aa19.65■□□□□ 0.74
UPF1-202ENST00000594243 ZBTB1Q9Y2K1 713 aa19.65■□□□□ 0.74
UPF1-202ENST00000594243 USP16Q9Y5T5 823 aa19.65■□□□□ 0.74
UPF1-202ENST00000594243 NCBP3Q53F19 620 aaKnown RBP19.64■□□□□ 0.73
UPF1-202ENST00000594243 DIEXFQ68CQ4 756 aaKnown RBP19.64■□□□□ 0.73
UPF1-202ENST00000594243 SOS1Q07889 1333 aaPredicted RBP19.63■□□□□ 0.73
UPF1-202ENST00000594243 MSL1Q68DK7 614 aa19.63■□□□□ 0.73
UPF1-202ENST00000594243 NPM2Q86SE8 214 aaKnown RBP19.63■□□□□ 0.73
UPF1-202ENST00000594243 NLGN1Q8N2Q7 840 aa19.63■□□□□ 0.73
UPF1-202ENST00000594243 LAS1LQ9Y4W2 734 aaKnown RBP19.63■□□□□ 0.73
UPF1-202ENST00000594243 MYH14Q7Z406 1995 aaKnown RBP19.63■□□□□ 0.73
UPF1-202ENST00000594243 PRAMEF22A3QJZ6 481 aa19.62■□□□□ 0.73
UPF1-202ENST00000594243 CCER2I3L3R5 266 aa19.62■□□□□ 0.73
UPF1-202ENST00000594243 CHL1O00533 1208 aa19.62■□□□□ 0.73
UPF1-202ENST00000594243 GIGYF1O75420 1035 aaPredicted RBP19.62■□□□□ 0.73
UPF1-202ENST00000594243 CCDC27Q2M243 656 aa19.62■□□□□ 0.73
UPF1-202ENST00000594243 CFAP44Q96MT7 982 aa19.62■□□□□ 0.73
UPF1-202ENST00000594243 A0A087WZG4 1122 aa19.61■□□□□ 0.73
UPF1-202ENST00000594243 ZPR1O75312 459 aa19.61■□□□□ 0.73
UPF1-202ENST00000594243 A1BGP04217 495 aa19.61■□□□□ 0.73
UPF1-202ENST00000594243 IL6STP40189 918 aaPredicted RBP19.61■□□□□ 0.73
UPF1-202ENST00000594243 EIF5P55010 431 aaKnown RBP19.61■□□□□ 0.73
UPF1-202ENST00000594243 KDM3BQ7LBC6 1761 aa19.61■□□□□ 0.73
UPF1-202ENST00000594243 COL24A1Q17RW2 1714 aa19.6■□□□□ 0.73
UPF1-202ENST00000594243 GYS1P13807 737 aa19.6■□□□□ 0.73
UPF1-202ENST00000594243 COL15A1P39059 1388 aa19.59■□□□□ 0.73
UPF1-202ENST00000594243 USP42Q9H9J4 1324 aaKnown RBP19.59■□□□□ 0.73
UPF1-202ENST00000594243 NARFQ9UHQ1 456 aa19.59■□□□□ 0.73
UPF1-202ENST00000594243 GNAI1P63096 354 aa19.58■□□□□ 0.72
UPF1-202ENST00000594243 IFT57Q9NWB7 429 aa19.58■□□□□ 0.72
UPF1-202ENST00000594243 ZNF330Q9Y3S2 320 aaPredicted RBP19.58■□□□□ 0.72
UPF1-202ENST00000594243 WWC1Q8IX03 1113 aa19.57■□□□□ 0.72
UPF1-202ENST00000594243 NGEFQ8N5V2 710 aa19.57■□□□□ 0.72
UPF1-202ENST00000594243 FHDC1Q9C0D6 1143 aaPredicted RBP19.57■□□□□ 0.72
UPF1-202ENST00000594243 SRP68Q9UHB9 627 aaKnown RBP19.57■□□□□ 0.72
UPF1-202ENST00000594243 ZNF853P0CG23 659 aa19.56■□□□□ 0.72
UPF1-202ENST00000594243 USPL1Q5W0Q7 1092 aa19.56■□□□□ 0.72
UPF1-202ENST00000594243 SYT17Q9BSW7 474 aa19.56■□□□□ 0.72
UPF1-202ENST00000594243 MMP10P09238 476 aa19.55■□□□□ 0.72
UPF1-202ENST00000594243 C4AP0C0L4 1744 aa19.54■□□□□ 0.72
UPF1-202ENST00000594243 SENP3-EIF4A1A0A087X0R7 540 aa19.54■□□□□ 0.72
UPF1-202ENST00000594243 KLHL34Q8N239 644 aa19.54■□□□□ 0.72
UPF1-202ENST00000594243 MBIPQ9NS73 344 aa19.54■□□□□ 0.72
UPF1-202ENST00000594243 PARP3Q9Y6F1 533 aa19.54■□□□□ 0.72
UPF1-202ENST00000594243 NBPF26B4DH59 902 aa19.53■□□□□ 0.72
UPF1-202ENST00000594243 PIP4K2AP48426 406 aaPredicted RBP19.53■□□□□ 0.72
UPF1-202ENST00000594243 FKBP8Q14318 412 aa19.53■□□□□ 0.72
UPF1-202ENST00000594243 NBPF10Q6P3W6 841 aaKnown RBP19.53■□□□□ 0.72
UPF1-202ENST00000594243 NBPF15Q8N660 670 aa19.53■□□□□ 0.72
UPF1-202ENST00000594243 TBC1D2BQ9UPU7 963 aa19.53■□□□□ 0.72
UPF1-202ENST00000594243 SALL2Q9Y467 1007 aaPredicted RBP19.53■□□□□ 0.72
UPF1-202ENST00000594243 ERBB4Q15303 1308 aa19.52■□□□□ 0.72
UPF1-202ENST00000594243 EIF2S2P20042 333 aaKnown RBP19.52■□□□□ 0.72
UPF1-202ENST00000594243 DZIP3Q86Y13 1208 aaKnown RBP19.52■□□□□ 0.72
UPF1-202ENST00000594243 WDR63Q8IWG1 891 aa19.52■□□□□ 0.72
UPF1-202ENST00000594243 CD2APQ9Y5K6 639 aa19.52■□□□□ 0.72
UPF1-202ENST00000594243 IL16Q14005 1332 aa19.51■□□□□ 0.71
UPF1-202ENST00000594243 HOXB7P09629 217 aa19.51■□□□□ 0.71
UPF1-202ENST00000594243 TM4SF1P30408 202 aa19.51■□□□□ 0.71
UPF1-202ENST00000594243 LAMB4A4D0S4 1761 aa19.51■□□□□ 0.71
UPF1-202ENST00000594243 DCAF8L1A6NGE4 600 aa19.5■□□□□ 0.71
UPF1-202ENST00000594243 MIER1Q8N108 512 aa19.5■□□□□ 0.71
UPF1-202ENST00000594243 BCL2L12Q9HB09 334 aa19.5■□□□□ 0.71
UPF1-202ENST00000594243 MYL6BP14649 208 aa19.49■□□□□ 0.71
UPF1-202ENST00000594243 KRT24Q2M2I5 525 aa19.49■□□□□ 0.71
UPF1-202ENST00000594243 CAMTA2O94983 1202 aa19.48■□□□□ 0.71
UPF1-202ENST00000594243 DUSP27Q5VZP5 1158 aa19.48■□□□□ 0.71
UPF1-202ENST00000594243 CLEC4GQ6UXB4 293 aa19.48■□□□□ 0.71
UPF1-202ENST00000594243 CHMP4AQ9BY43 222 aa19.48■□□□□ 0.71
UPF1-202ENST00000594243 ZNF652Q9Y2D9 606 aa19.48■□□□□ 0.71
UPF1-202ENST00000594243 RGL2O15211 777 aa19.47■□□□□ 0.71
UPF1-202ENST00000594243 NFIXQ14938 502 aa19.47■□□□□ 0.71
UPF1-202ENST00000594243 POLRMTO00411 1230 aaKnown RBP19.46■□□□□ 0.71
UPF1-202ENST00000594243 HDGFL1Q5TGJ6 251 aa19.46■□□□□ 0.71
UPF1-202ENST00000594243 NECTIN2Q92692 538 aa19.46■□□□□ 0.71
UPF1-202ENST00000594243 DDR1Q08345 913 aa19.45■□□□□ 0.7
UPF1-202ENST00000594243 PDIA6Q15084 440 aa19.45■□□□□ 0.7
UPF1-202ENST00000594243 TBC1D9BQ66K14 1250 aa19.45■□□□□ 0.7
UPF1-202ENST00000594243 KIF6Q6ZMV9 814 aa19.45■□□□□ 0.7
UPF1-202ENST00000594243 BICDL1Q6ZP65 573 aa19.45■□□□□ 0.7
UPF1-202ENST00000594243 DDX21Q9NR30 783 aaKnown RBP eCLIP19.45■□□□□ 0.7
UPF1-202ENST00000594243 ERVV-1B6SEH8 477 aa19.44■□□□□ 0.7
UPF1-202ENST00000594243 ELL2O00472 640 aaPredicted RBP19.44■□□□□ 0.7
UPF1-202ENST00000594243 SERPINB2P05120 415 aa19.44■□□□□ 0.7
UPF1-202ENST00000594243 NLGN2Q8NFZ4 835 aa19.44■□□□□ 0.7
UPF1-202ENST00000594243 TSR2Q969E8 191 aaKnown RBP19.44■□□□□ 0.7
UPF1-202ENST00000594243 SETDB2Q96T68 719 aa19.44■□□□□ 0.7
UPF1-202ENST00000594243 DBF4Q9UBU7 674 aaPredicted RBP19.44■□□□□ 0.7
UPF1-202ENST00000594243 TGFB2P61812 414 aa19.43■□□□□ 0.7
UPF1-202ENST00000594243 C8orf58Q8NAV2 365 aa19.43■□□□□ 0.7
UPF1-202ENST00000594243 GOLGA2Q08379 1002 aa19.42■□□□□ 0.7
UPF1-202ENST00000594243 TTLL7Q6ZT98 887 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms