RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 APAF1O14727 1248 aa19.13■□□□□ 0.65
VRK3-206ENST00000594090 STARD3NLO95772 234 aa19.13■□□□□ 0.65
VRK3-206ENST00000594090 TEX13AQ9BXU3 409 aaPredicted RBP19.13■□□□□ 0.65
VRK3-206ENST00000594090 ZBTB1Q9Y2K1 713 aa19.13■□□□□ 0.65
VRK3-206ENST00000594090 LAMB4A4D0S4 1761 aa19.13■□□□□ 0.65
VRK3-206ENST00000594090 SOS1Q07889 1333 aaPredicted RBP19.12■□□□□ 0.65
VRK3-206ENST00000594090 POLD1P28340 1107 aa19.12■□□□□ 0.65
VRK3-206ENST00000594090 ARHGEF1Q92888 912 aaKnown RBP19.12■□□□□ 0.65
VRK3-206ENST00000594090 ARXQ96QS3 562 aa19.11■□□□□ 0.65
VRK3-206ENST00000594090 SNRPA1P09661 255 aaKnown RBP19.1■□□□□ 0.65
VRK3-206ENST00000594090 COL15A1P39059 1388 aa19.1■□□□□ 0.65
VRK3-206ENST00000594090 PRAMEF22A3QJZ6 481 aa19.09■□□□□ 0.65
VRK3-206ENST00000594090 RFC4P35249 363 aa19.09■□□□□ 0.65
VRK3-206ENST00000594090 TSPYL4Q9UJ04 414 aa19.09■□□□□ 0.65
VRK3-206ENST00000594090 EIF4A1P60842 406 aaKnown RBP19.08■□□□□ 0.65
VRK3-206ENST00000594090 BABAM1Q9NWV8 329 aa19.08■□□□□ 0.65
VRK3-206ENST00000594090 USP42Q9H9J4 1324 aaKnown RBP19.08■□□□□ 0.64
VRK3-206ENST00000594090 CANXP27824 592 aaKnown RBP19.08■□□□□ 0.64
VRK3-206ENST00000594090 USP16Q9Y5T5 823 aa19.08■□□□□ 0.64
VRK3-206ENST00000594090 GYS1P13807 737 aa19.07■□□□□ 0.64
VRK3-206ENST00000594090 FHDC1Q9C0D6 1143 aaPredicted RBP19.07■□□□□ 0.64
VRK3-206ENST00000594090 A1BGP04217 495 aa19.06■□□□□ 0.64
VRK3-206ENST00000594090 EIF5P55010 431 aaKnown RBP19.06■□□□□ 0.64
VRK3-206ENST00000594090 SRP68Q9UHB9 627 aaKnown RBP19.06■□□□□ 0.64
VRK3-206ENST00000594090 SCN7AQ01118 1682 aa19.05■□□□□ 0.64
VRK3-206ENST00000594090 GIGYF1O75420 1035 aaPredicted RBP19.05■□□□□ 0.64
VRK3-206ENST00000594090 CHL1O00533 1208 aa19.04■□□□□ 0.64
VRK3-206ENST00000594090 IL6STP40189 918 aaPredicted RBP19.04■□□□□ 0.64
VRK3-206ENST00000594090 FAM9BQ8IZU0 186 aa19.04■□□□□ 0.64
VRK3-206ENST00000594090 NLGN1Q8N2Q7 840 aa19.03■□□□□ 0.64
VRK3-206ENST00000594090 SYT17Q9BSW7 474 aa19.03■□□□□ 0.64
VRK3-206ENST00000594090 LAS1LQ9Y4W2 734 aaKnown RBP19.03■□□□□ 0.64
VRK3-206ENST00000594090 ZPR1O75312 459 aa19.02■□□□□ 0.64
VRK3-206ENST00000594090 MMP10P09238 476 aa19.02■□□□□ 0.64
VRK3-206ENST00000594090 PIP4K2AP48426 406 aaPredicted RBP19.02■□□□□ 0.64
VRK3-206ENST00000594090 CFAP44Q96MT7 982 aa19.02■□□□□ 0.64
VRK3-206ENST00000594090 NARFQ9UHQ1 456 aa19.02■□□□□ 0.64
VRK3-206ENST00000594090 ZNF330Q9Y3S2 320 aaPredicted RBP19.02■□□□□ 0.64
VRK3-206ENST00000594090 BCORQ6W2J9 1755 aa19.02■□□□□ 0.63
VRK3-206ENST00000594090 A0A087WZG4 1122 aa19.01■□□□□ 0.63
VRK3-206ENST00000594090 SENP3-EIF4A1A0A087X0R7 540 aa19.01■□□□□ 0.63
VRK3-206ENST00000594090 CALD1Q05682 793 aaKnown RBP19.01■□□□□ 0.63
VRK3-206ENST00000594090 FKBP8Q14318 412 aa19.01■□□□□ 0.63
VRK3-206ENST00000594090 CCDC27Q2M243 656 aa19.01■□□□□ 0.63
VRK3-206ENST00000594090 USPL1Q5W0Q7 1092 aa19.01■□□□□ 0.63
VRK3-206ENST00000594090 KLHL34Q8N239 644 aa19.01■□□□□ 0.63
VRK3-206ENST00000594090 NBPF26B4DH59 902 aa19■□□□□ 0.63
VRK3-206ENST00000594090 ZNF853P0CG23 659 aa19■□□□□ 0.63
VRK3-206ENST00000594090 NCBP3Q53F19 620 aaKnown RBP19■□□□□ 0.63
VRK3-206ENST00000594090 NBPF10Q6P3W6 841 aaKnown RBP19■□□□□ 0.63
VRK3-206ENST00000594090 NBPF15Q8N660 670 aa19■□□□□ 0.63
VRK3-206ENST00000594090 IFT57Q9NWB7 429 aa19■□□□□ 0.63
VRK3-206ENST00000594090 CCER2I3L3R5 266 aa18.99■□□□□ 0.63
VRK3-206ENST00000594090 DIEXFQ68CQ4 756 aaKnown RBP18.99■□□□□ 0.63
VRK3-206ENST00000594090 NPM2Q86SE8 214 aaKnown RBP18.99■□□□□ 0.63
VRK3-206ENST00000594090 GNAI1P63096 354 aa18.98■□□□□ 0.63
VRK3-206ENST00000594090 KRT24Q2M2I5 525 aa18.98■□□□□ 0.63
VRK3-206ENST00000594090 WWC1Q8IX03 1113 aa18.98■□□□□ 0.63
VRK3-206ENST00000594090 BCL2L12Q9HB09 334 aa18.98■□□□□ 0.63
VRK3-206ENST00000594090 MBIPQ9NS73 344 aa18.98■□□□□ 0.63
VRK3-206ENST00000594090 TBC1D2BQ9UPU7 963 aa18.98■□□□□ 0.63
VRK3-206ENST00000594090 KIF13BQ9NQT8 1826 aa18.97■□□□□ 0.63
VRK3-206ENST00000594090 DDR1Q08345 913 aa18.96■□□□□ 0.63
VRK3-206ENST00000594090 DZIP3Q86Y13 1208 aaKnown RBP18.96■□□□□ 0.63
VRK3-206ENST00000594090 NLGN2Q8NFZ4 835 aa18.96■□□□□ 0.63
VRK3-206ENST00000594090 CD2APQ9Y5K6 639 aa18.96■□□□□ 0.63
VRK3-206ENST00000594090 PARP3Q9Y6F1 533 aa18.96■□□□□ 0.63
VRK3-206ENST00000594090 ERBB4Q15303 1308 aa18.96■□□□□ 0.63
VRK3-206ENST00000594090 CAMTA2O94983 1202 aa18.95■□□□□ 0.62
VRK3-206ENST00000594090 TM4SF1P30408 202 aa18.95■□□□□ 0.62
VRK3-206ENST00000594090 C10orf71Q711Q0 1435 aa18.95■□□□□ 0.62
VRK3-206ENST00000594090 EIF2S2P20042 333 aaKnown RBP18.94■□□□□ 0.62
VRK3-206ENST00000594090 NFIXQ14938 502 aa18.94■□□□□ 0.62
VRK3-206ENST00000594090 NRXN2Q9P2S2 1712 aa18.94■□□□□ 0.62
VRK3-206ENST00000594090 AFDNP55196 1824 aaKnown RBP18.93■□□□□ 0.62
VRK3-206ENST00000594090 POLRMTO00411 1230 aaKnown RBP18.93■□□□□ 0.62
VRK3-206ENST00000594090 SALL2Q9Y467 1007 aaPredicted RBP18.93■□□□□ 0.62
VRK3-206ENST00000594090 KIAA1551Q9HCM1 1747 aa18.93■□□□□ 0.62
VRK3-206ENST00000594090 IL16Q14005 1332 aa18.92■□□□□ 0.62
VRK3-206ENST00000594090 HOXB7P09629 217 aa18.92■□□□□ 0.62
VRK3-206ENST00000594090 MYL6BP14649 208 aa18.91■□□□□ 0.62
VRK3-206ENST00000594090 TBC1D9BQ66K14 1250 aa18.91■□□□□ 0.62
VRK3-206ENST00000594090 NGEFQ8N5V2 710 aa18.91■□□□□ 0.62
VRK3-206ENST00000594090 NECTIN2Q92692 538 aa18.91■□□□□ 0.62
VRK3-206ENST00000594090 PDIA6Q15084 440 aa18.91■□□□□ 0.62
VRK3-206ENST00000594090 DUSP27Q5VZP5 1158 aa18.91■□□□□ 0.62
VRK3-206ENST00000594090 BICDL1Q6ZP65 573 aa18.91■□□□□ 0.62
VRK3-206ENST00000594090 PROSER3Q2NL68 480 aa18.9■□□□□ 0.62
VRK3-206ENST00000594090 HDGFL1Q5TGJ6 251 aa18.9■□□□□ 0.62
VRK3-206ENST00000594090 LRP10Q7Z4F1 713 aa18.9■□□□□ 0.62
VRK3-206ENST00000594090 TSR2Q969E8 191 aaKnown RBP18.9■□□□□ 0.62
VRK3-206ENST00000594090 ZNF652Q9Y2D9 606 aa18.9■□□□□ 0.62
VRK3-206ENST00000594090 PXDNLA1KZ92 1463 aa18.89■□□□□ 0.62
VRK3-206ENST00000594090 CARMIL3Q8ND23 1372 aa18.89■□□□□ 0.61
VRK3-206ENST00000594090 RGL2O15211 777 aa18.89■□□□□ 0.61
VRK3-206ENST00000594090 ANXA1P04083 346 aa18.89■□□□□ 0.61
VRK3-206ENST00000594090 CLEC4GQ6UXB4 293 aa18.89■□□□□ 0.61
VRK3-206ENST00000594090 TTLL7Q6ZT98 887 aa18.89■□□□□ 0.61
VRK3-206ENST00000594090 WDR63Q8IWG1 891 aa18.89■□□□□ 0.61
VRK3-206ENST00000594090 MIER1Q8N108 512 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 1381.3 ms