RNA–Protein interactions for RNA: ENST00000588667.5

ATG4D-208, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,619 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-208ENST00000588667 CCDC87Q9NVE4 849 aa26.24■■□□□ 1.79
ATG4D-208ENST00000588667 RTCBQ9Y3I0 505 aaKnown RBP26.24■■□□□ 1.79
ATG4D-208ENST00000588667 LAS1LQ9Y4W2 734 aaKnown RBP26.24■■□□□ 1.79
ATG4D-208ENST00000588667 SRCAPQ6ZRS2 3230 aa26.23■■□□□ 1.79
ATG4D-208ENST00000588667 INTS5Q6P9B9 1019 aaKnown RBP26.23■■□□□ 1.79
ATG4D-208ENST00000588667 IFT57Q9NWB7 429 aa26.23■■□□□ 1.79
ATG4D-208ENST00000588667 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.22■■□□□ 1.79
ATG4D-208ENST00000588667 RPS6KA4O75676 772 aa26.22■■□□□ 1.79
ATG4D-208ENST00000588667 PHF14O94880 888 aa26.21■■□□□ 1.79
ATG4D-208ENST00000588667 COL23A1Q86Y22 540 aaPredicted RBP26.21■■□□□ 1.79
ATG4D-208ENST00000588667 C4AP0C0L4 1744 aa26.21■■□□□ 1.79
ATG4D-208ENST00000588667 LRP5O75197 1615 aa26.21■■□□□ 1.79
ATG4D-208ENST00000588667 ZNF853P0CG23 659 aa26.21■■□□□ 1.79
ATG4D-208ENST00000588667 GNAI1P63096 354 aa26.21■■□□□ 1.79
ATG4D-208ENST00000588667 ADRA2BP18089 450 aa26.2■■□□□ 1.78
ATG4D-208ENST00000588667 SLC16A10Q8TF71 515 aa26.2■■□□□ 1.78
ATG4D-208ENST00000588667 SALL2Q9Y467 1007 aaPredicted RBP26.2■■□□□ 1.78
ATG4D-208ENST00000588667 PRAMEF22A3QJZ6 481 aa26.19■■□□□ 1.78
ATG4D-208ENST00000588667 GIGYF1O75420 1035 aaPredicted RBP26.19■■□□□ 1.78
ATG4D-208ENST00000588667 ZBTB1Q9Y2K1 713 aa26.19■■□□□ 1.78
ATG4D-208ENST00000588667 USP16Q9Y5T5 823 aa26.19■■□□□ 1.78
ATG4D-208ENST00000588667 SMIM5Q71RC9 77 aa26.18■■□□□ 1.78
ATG4D-208ENST00000588667 MTFR1LQ9H019 292 aa26.18■■□□□ 1.78
ATG4D-208ENST00000588667 IL16Q14005 1332 aa26.18■■□□□ 1.78
ATG4D-208ENST00000588667 MSH5O43196 834 aa26.17■■□□□ 1.78
ATG4D-208ENST00000588667 MBIPQ9NS73 344 aa26.17■■□□□ 1.78
ATG4D-208ENST00000588667 SOS1Q07889 1333 aaPredicted RBP26.17■■□□□ 1.78
ATG4D-208ENST00000588667 ZBTB7AO95365 584 aa26.17■■□□□ 1.78
ATG4D-208ENST00000588667 TRAPPC3LQ5T215 181 aa26.17■■□□□ 1.78
ATG4D-208ENST00000588667 COL24A1Q17RW2 1714 aa26.17■■□□□ 1.78
ATG4D-208ENST00000588667 WDR63Q8IWG1 891 aa26.16■■□□□ 1.78
ATG4D-208ENST00000588667 SPON1Q9HCB6 807 aa26.15■■□□□ 1.78
ATG4D-208ENST00000588667 A1BGP04217 495 aa26.14■■□□□ 1.77
ATG4D-208ENST00000588667 CANXP27824 592 aaKnown RBP26.14■■□□□ 1.77
ATG4D-208ENST00000588667 ARHGEF1Q92888 912 aaKnown RBP26.14■■□□□ 1.77
ATG4D-208ENST00000588667 COL15A1P39059 1388 aa26.13■■□□□ 1.77
ATG4D-208ENST00000588667 RFC4P35249 363 aa26.12■■□□□ 1.77
ATG4D-208ENST00000588667 ZNF521Q96K83 1311 aa26.12■■□□□ 1.77
ATG4D-208ENST00000588667 IL6STP40189 918 aaPredicted RBP26.11■■□□□ 1.77
ATG4D-208ENST00000588667 EIF5P55010 431 aaKnown RBP26.11■■□□□ 1.77
ATG4D-208ENST00000588667 ATF5Q9Y2D1 282 aaPredicted RBP26.11■■□□□ 1.77
ATG4D-208ENST00000588667 KRT24Q2M2I5 525 aa26.1■■□□□ 1.77
ATG4D-208ENST00000588667 HOXB7P09629 217 aa26.1■■□□□ 1.77
ATG4D-208ENST00000588667 USP42Q9H9J4 1324 aaKnown RBP26.09■■□□□ 1.77
ATG4D-208ENST00000588667 TSR2Q969E8 191 aaKnown RBP26.08■■□□□ 1.77
ATG4D-208ENST00000588667 ERBB4Q15303 1308 aa26.08■■□□□ 1.77
ATG4D-208ENST00000588667 A0A087WZG4 1122 aa26.07■■□□□ 1.76
ATG4D-208ENST00000588667 PTGER2P43116 358 aa26.07■■□□□ 1.76
ATG4D-208ENST00000588667 NBPF26B4DH59 902 aa26.06■■□□□ 1.76
ATG4D-208ENST00000588667 PIP4K2AP48426 406 aaPredicted RBP26.06■■□□□ 1.76
ATG4D-208ENST00000588667 NBPF10Q6P3W6 841 aaKnown RBP26.06■■□□□ 1.76
ATG4D-208ENST00000588667 NPM2Q86SE8 214 aaKnown RBP26.06■■□□□ 1.76
ATG4D-208ENST00000588667 NBPF15Q8N660 670 aa26.06■■□□□ 1.76
ATG4D-208ENST00000588667 SGIP1Q9BQI5 828 aa26.06■■□□□ 1.76
ATG4D-208ENST00000588667 ZNF330Q9Y3S2 320 aaPredicted RBP26.06■■□□□ 1.76
ATG4D-208ENST00000588667 SCN7AQ01118 1682 aa26.06■■□□□ 1.76
ATG4D-208ENST00000588667 DUSP27Q5VZP5 1158 aa26.06■■□□□ 1.76
ATG4D-208ENST00000588667 MSL1Q68DK7 614 aa26.06■■□□□ 1.76
ATG4D-208ENST00000588667 FANCIQ9NVI1 1328 aa26.06■■□□□ 1.76
ATG4D-208ENST00000588667 EIF2S2P20042 333 aaKnown RBP26.05■■□□□ 1.76
ATG4D-208ENST00000588667 NARFQ9UHQ1 456 aa26.05■■□□□ 1.76
ATG4D-208ENST00000588667 ZPR1O75312 459 aa26.04■■□□□ 1.76
ATG4D-208ENST00000588667 GYS1P13807 737 aa26.04■■□□□ 1.76
ATG4D-208ENST00000588667 POLD1P28340 1107 aa26.04■■□□□ 1.76
ATG4D-208ENST00000588667 SRP68Q9UHB9 627 aaKnown RBP26.04■■□□□ 1.76
ATG4D-208ENST00000588667 BCORQ6W2J9 1755 aa26.04■■□□□ 1.76
ATG4D-208ENST00000588667 MYH16Q9H6N6 1097 aa26.03■■□□□ 1.76
ATG4D-208ENST00000588667 SPINK5Q9NQ38 1064 aaPredicted RBP26.03■■□□□ 1.76
ATG4D-208ENST00000588667 HDGFL1Q5TGJ6 251 aa26.02■■□□□ 1.76
ATG4D-208ENST00000588667 NLGN1Q8N2Q7 840 aa26.02■■□□□ 1.76
ATG4D-208ENST00000588667 C8orf58Q8NAV2 365 aa26.02■■□□□ 1.76
ATG4D-208ENST00000588667 GOLGA2Q08379 1002 aa26.01■■□□□ 1.75
ATG4D-208ENST00000588667 USPL1Q5W0Q7 1092 aa26.01■■□□□ 1.75
ATG4D-208ENST00000588667 ELL2O00472 640 aaPredicted RBP25.99■■□□□ 1.75
ATG4D-208ENST00000588667 MYL6BP14649 208 aa25.99■■□□□ 1.75
ATG4D-208ENST00000588667 PDIA6Q15084 440 aa25.99■■□□□ 1.75
ATG4D-208ENST00000588667 DZIP3Q86Y13 1208 aaKnown RBP25.99■■□□□ 1.75
ATG4D-208ENST00000588667 NECTIN2Q92692 538 aa25.99■■□□□ 1.75
ATG4D-208ENST00000588667 TBC1D2BQ9UPU7 963 aa25.99■■□□□ 1.75
ATG4D-208ENST00000588667 PPP1R1BQ9UD71 204 aaPredicted RBP25.99■■□□□ 1.75
ATG4D-208ENST00000588667 TSPYL6Q8N831 410 aa25.98■■□□□ 1.75
ATG4D-208ENST00000588667 CHMP4AQ9BY43 222 aa25.98■■□□□ 1.75
ATG4D-208ENST00000588667 E9PSI1 815 aa25.97■■□□□ 1.75
ATG4D-208ENST00000588667 FKBP8Q14318 412 aa25.97■■□□□ 1.75
ATG4D-208ENST00000588667 ARXQ96QS3 562 aa25.97■■□□□ 1.75
ATG4D-208ENST00000588667 BCL2L12Q9HB09 334 aa25.97■■□□□ 1.75
ATG4D-208ENST00000588667 DDX21Q9NR30 783 aaKnown RBP eCLIP25.97■■□□□ 1.75
ATG4D-208ENST00000588667 CAMTA2O94983 1202 aa25.96■■□□□ 1.75
ATG4D-208ENST00000588667 LRP10Q7Z4F1 713 aa25.96■■□□□ 1.75
ATG4D-208ENST00000588667 CHPF2Q9P2E5 772 aa25.96■■□□□ 1.75
ATG4D-208ENST00000588667 MMP10P09238 476 aa25.96■■□□□ 1.75
ATG4D-208ENST00000588667 PROSER3Q2NL68 480 aa25.96■■□□□ 1.75
ATG4D-208ENST00000588667 TWISTNBQ3B726 338 aaPredicted RBP25.96■■□□□ 1.75
ATG4D-208ENST00000588667 DBF4Q9UBU7 674 aaPredicted RBP25.96■■□□□ 1.75
ATG4D-208ENST00000588667 RGL2O15211 777 aa25.94■■□□□ 1.74
ATG4D-208ENST00000588667 ANXA1P04083 346 aa25.94■■□□□ 1.74
ATG4D-208ENST00000588667 EXOSC9Q06265 439 aaKnown RBP25.93■■□□□ 1.74
ATG4D-208ENST00000588667 CACNA1FO60840 1977 aa25.93■■□□□ 1.74
ATG4D-208ENST00000588667 SLFN5Q08AF3 891 aa25.92■■□□□ 1.74
ATG4D-208ENST00000588667 CCDC30Q5VVM6 783 aa25.92■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 1220.7 ms