RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 TSPYL4Q9UJ04 414 aa13.23□□□□□ -0.29
LIG3-203ENST00000585370 NOB1Q9ULX3 412 aaKnown RBP13.23□□□□□ -0.29
LIG3-203ENST00000585370 QSER1Q2KHR3 1735 aa13.22□□□□□ -0.29
LIG3-203ENST00000585370 CYP27B1O15528 508 aa13.22□□□□□ -0.29
LIG3-203ENST00000585370 MVPQ14764 893 aaKnown RBP13.22□□□□□ -0.29
LIG3-203ENST00000585370 ZNF530Q6P9A1 599 aaPredicted RBP13.22□□□□□ -0.29
LIG3-203ENST00000585370 COL23A1Q86Y22 540 aaPredicted RBP13.22□□□□□ -0.29
LIG3-203ENST00000585370 TSPYL6Q8N831 410 aa13.22□□□□□ -0.29
LIG3-203ENST00000585370 ZNF784Q8NCA9 323 aaPredicted RBP13.22□□□□□ -0.29
LIG3-203ENST00000585370 PANK1Q8TE04 598 aa13.22□□□□□ -0.29
LIG3-203ENST00000585370 CLUAP1Q96AJ1 413 aa13.22□□□□□ -0.29
LIG3-203ENST00000585370 BCL2L13Q9BXK5 485 aa13.22□□□□□ -0.29
LIG3-203ENST00000585370 API5Q9BZZ5 524 aaKnown RBP13.22□□□□□ -0.29
LIG3-203ENST00000585370 DDX19BQ9UMR2 479 aa13.22□□□□□ -0.29
LIG3-203ENST00000585370 SPG7Q9UQ90 795 aa13.22□□□□□ -0.29
LIG3-203ENST00000585370 COG6Q9Y2V7 657 aa13.22□□□□□ -0.29
LIG3-203ENST00000585370 CEMIPQ8WUJ3 1361 aa13.21□□□□□ -0.29
LIG3-203ENST00000585370 PCDH11XQ9BZA7 1347 aa13.21□□□□□ -0.29
LIG3-203ENST00000585370 PCDH11YQ9BZA8 1340 aa13.21□□□□□ -0.29
LIG3-203ENST00000585370 TUBGCP6Q96RT7 1819 aa13.21□□□□□ -0.29
LIG3-203ENST00000585370 POLD1P28340 1107 aa13.21□□□□□ -0.29
LIG3-203ENST00000585370 MPRIPQ6WCQ1 1025 aa13.21□□□□□ -0.29
LIG3-203ENST00000585370 COL24A1Q17RW2 1714 aa13.2□□□□□ -0.3
LIG3-203ENST00000585370 TRIM27P14373 513 aa13.2□□□□□ -0.3
LIG3-203ENST00000585370 KLHL34Q8N239 644 aa13.2□□□□□ -0.3
LIG3-203ENST00000585370 GPR162Q16538 588 aa13.19□□□□□ -0.3
LIG3-203ENST00000585370 ELL2O00472 640 aaPredicted RBP13.18□□□□□ -0.3
LIG3-203ENST00000585370 RNMTO43148 476 aaKnown RBP13.18□□□□□ -0.3
LIG3-203ENST00000585370 MSH5O43196 834 aa13.18□□□□□ -0.3
LIG3-203ENST00000585370 HSP90AB1P08238 724 aaKnown RBP13.18□□□□□ -0.3
LIG3-203ENST00000585370 HOXB7P09629 217 aa13.18□□□□□ -0.3
LIG3-203ENST00000585370 RLBP1P12271 317 aa13.18□□□□□ -0.3
LIG3-203ENST00000585370 TEFQ10587 303 aa13.18□□□□□ -0.3
LIG3-203ENST00000585370 NKX1-1Q15270 411 aaPredicted RBP13.18□□□□□ -0.3
LIG3-203ENST00000585370 NLGN2Q8NFZ4 835 aa13.18□□□□□ -0.3
LIG3-203ENST00000585370 CHD4Q14839 1912 aa13.17□□□□□ -0.3
LIG3-203ENST00000585370 PTPRCP08575 1304 aa13.17□□□□□ -0.3
LIG3-203ENST00000585370 KDM2BQ8NHM5 1336 aa13.17□□□□□ -0.3
LIG3-203ENST00000585370 TCERG1O14776 1098 aaKnown RBP13.17□□□□□ -0.3
LIG3-203ENST00000585370 CCDC30Q5VVM6 783 aa13.17□□□□□ -0.3
LIG3-203ENST00000585370 PIGBQ92521 554 aa13.17□□□□□ -0.3
LIG3-203ENST00000585370 RWDD1Q9H446 243 aaPredicted RBP13.17□□□□□ -0.3
LIG3-203ENST00000585370 PALLDQ8WX93 1383 aa13.17□□□□□ -0.3
LIG3-203ENST00000585370 MSL1Q68DK7 614 aa13.16□□□□□ -0.3
LIG3-203ENST00000585370 IFNL2Q8IZJ0 200 aa13.16□□□□□ -0.3
LIG3-203ENST00000585370 STK31Q9BXU1 1019 aa13.16□□□□□ -0.3
LIG3-203ENST00000585370 AMIGO3Q86WK7 504 aa13.15□□□□□ -0.3
LIG3-203ENST00000585370 ITPRIPQ8IWB1 547 aa13.15□□□□□ -0.3
LIG3-203ENST00000585370 LGR6Q9HBX8 967 aa13.15□□□□□ -0.3
LIG3-203ENST00000585370 TSHZ2Q9NRE2 1034 aa13.15□□□□□ -0.3
LIG3-203ENST00000585370 MIS18AQ9NYP9 233 aa13.15□□□□□ -0.3
LIG3-203ENST00000585370 TOGARAM1Q9Y4F4 1720 aa13.15□□□□□ -0.3
LIG3-203ENST00000585370 ITGB4P16144 1822 aa13.14□□□□□ -0.31
LIG3-203ENST00000585370 BTBD11A6QL63 1104 aa13.14□□□□□ -0.31
LIG3-203ENST00000585370 TMEM57Q8N5G2 664 aa13.14□□□□□ -0.31
LIG3-203ENST00000585370 SMARCC1Q92922 1105 aaPredicted RBP13.14□□□□□ -0.31
LIG3-203ENST00000585370 C5P01031 1676 aa13.14□□□□□ -0.31
LIG3-203ENST00000585370 ABCC4O15439 1325 aa13.13□□□□□ -0.31
LIG3-203ENST00000585370 PKD1L3Q7Z443 1732 aa13.13□□□□□ -0.31
LIG3-203ENST00000585370 SLC4A2P04920 1241 aa13.13□□□□□ -0.31
LIG3-203ENST00000585370 PHKG2P15735 406 aa13.13□□□□□ -0.31
LIG3-203ENST00000585370 YBX3P16989 372 aaKnown RBP eCLIP13.13□□□□□ -0.31
LIG3-203ENST00000585370 HMGB2P26583 209 aaKnown RBP13.13□□□□□ -0.31
LIG3-203ENST00000585370 EIF4A1P60842 406 aaKnown RBP13.13□□□□□ -0.31
LIG3-203ENST00000585370 INTS3Q68E01 1043 aaKnown RBP13.13□□□□□ -0.31
LIG3-203ENST00000585370 SMIM5Q71RC9 77 aa13.13□□□□□ -0.31
LIG3-203ENST00000585370 FLAD1Q8NFF5 587 aa13.13□□□□□ -0.31
LIG3-203ENST00000585370 DCAF5Q96JK2 942 aa13.13□□□□□ -0.31
LIG3-203ENST00000585370 ZBTB40Q9NUA8 1239 aa13.13□□□□□ -0.31
LIG3-203ENST00000585370 TNNQ9UQP3 1299 aa13.13□□□□□ -0.31
LIG3-203ENST00000585370 TAF1LQ8IZX4 1826 aa13.13□□□□□ -0.31
LIG3-203ENST00000585370 LOC102724428A0A0B4J2F2 783 aa13.12□□□□□ -0.31
LIG3-203ENST00000585370 SIK1P57059 783 aa13.12□□□□□ -0.31
LIG3-203ENST00000585370 ASAP1Q9ULH1 1129 aa13.12□□□□□ -0.31
LIG3-203ENST00000585370 ZBTB7BO15156 539 aaPredicted RBP13.11□□□□□ -0.31
LIG3-203ENST00000585370 HDAC1Q13547 482 aaPredicted RBP13.11□□□□□ -0.31
LIG3-203ENST00000585370 KRT24Q2M2I5 525 aa13.11□□□□□ -0.31
LIG3-203ENST00000585370 LINC00116Q8NCU8 138 aa13.11□□□□□ -0.31
LIG3-203ENST00000585370 AK7Q96M32 723 aa13.11□□□□□ -0.31
LIG3-203ENST00000585370 CEP350Q5VT06 3117 aa13.11□□□□□ -0.31
LIG3-203ENST00000585370 C4BP0C0L5 1744 aa13.1□□□□□ -0.31
LIG3-203ENST00000585370 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.1□□□□□ -0.31
LIG3-203ENST00000585370 PHF14O94880 888 aa13.1□□□□□ -0.31
LIG3-203ENST00000585370 ITPK1Q13572 414 aa13.1□□□□□ -0.31
LIG3-203ENST00000585370 SLC52A2Q9HAB3 445 aa13.1□□□□□ -0.31
LIG3-203ENST00000585370 TMOD3Q9NYL9 352 aa13.1□□□□□ -0.31
LIG3-203ENST00000585370 PCDHB15Q9Y5E8 787 aa13.1□□□□□ -0.31
LIG3-203ENST00000585370 CD2APQ9Y5K6 639 aa13.1□□□□□ -0.31
LIG3-203ENST00000585370 GRIN3BO60391 1043 aa13.09□□□□□ -0.31
LIG3-203ENST00000585370 IGHDP01880 384 aa13.09□□□□□ -0.31
LIG3-203ENST00000585370 CCT4P50991 539 aaKnown RBP13.09□□□□□ -0.31
LIG3-203ENST00000585370 ATG3Q9NT62 314 aa13.09□□□□□ -0.31
LIG3-203ENST00000585370 CACNA1FO60840 1977 aa13.09□□□□□ -0.31
LIG3-203ENST00000585370 ADAMTS7Q9UKP4 1686 aa13.08□□□□□ -0.31
LIG3-203ENST00000585370 ATP6V1AP38606 617 aa13.08□□□□□ -0.32
LIG3-203ENST00000585370 C1QTNF8P60827 252 aa13.08□□□□□ -0.32
LIG3-203ENST00000585370 HDGFL1Q5TGJ6 251 aa13.08□□□□□ -0.32
LIG3-203ENST00000585370 UBR3Q6ZT12 1888 aa13.08□□□□□ -0.32
LIG3-203ENST00000585370 HEG1Q9ULI3 1381 aa13.07□□□□□ -0.32
LIG3-203ENST00000585370 ERVV-2B6SEH9 535 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms