RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 CCDC87Q9NVE4 849 aa20.1■□□□□ 0.81
SS18-216ENST00000580751 FANCIQ9NVI1 1328 aa20.09■□□□□ 0.81
SS18-216ENST00000580751 GNPATO15228 680 aa20.09■□□□□ 0.81
SS18-216ENST00000580751 HOXB7P09629 217 aa20.09■□□□□ 0.81
SS18-216ENST00000580751 R3HDM1Q15032 1099 aaKnown RBP20.09■□□□□ 0.81
SS18-216ENST00000580751 TSR2Q969E8 191 aaKnown RBP20.09■□□□□ 0.81
SS18-216ENST00000580751 UBR3Q6ZT12 1888 aa20.09■□□□□ 0.81
SS18-216ENST00000580751 MYH14Q7Z406 1995 aaKnown RBP20.08■□□□□ 0.81
SS18-216ENST00000580751 FLAD1Q8NFF5 587 aa20.08■□□□□ 0.81
SS18-216ENST00000580751 TUBGCP6Q96RT7 1819 aa20.08■□□□□ 0.8
SS18-216ENST00000580751 PRAMEF22A3QJZ6 481 aa20.07■□□□□ 0.8
SS18-216ENST00000580751 E9PSI1 815 aa20.07■□□□□ 0.8
SS18-216ENST00000580751 SSFA2P28290 1259 aa20.07■□□□□ 0.8
SS18-216ENST00000580751 INTS5Q6P9B9 1019 aaKnown RBP20.07■□□□□ 0.8
SS18-216ENST00000580751 RTCBQ9Y3I0 505 aaKnown RBP20.07■□□□□ 0.8
SS18-216ENST00000580751 USP16Q9Y5T5 823 aa20.07■□□□□ 0.8
SS18-216ENST00000580751 SOS1Q07889 1333 aaPredicted RBP20.06■□□□□ 0.8
SS18-216ENST00000580751 PSDA5PKW4 1024 aaPredicted RBP20.06■□□□□ 0.8
SS18-216ENST00000580751 RPS6KA4O75676 772 aa20.06■□□□□ 0.8
SS18-216ENST00000580751 ADRA2BP18089 450 aa20.06■□□□□ 0.8
SS18-216ENST00000580751 PNPLA7Q6ZV29 1317 aa20.05■□□□□ 0.8
SS18-216ENST00000580751 KRT24Q2M2I5 525 aa20.05■□□□□ 0.8
SS18-216ENST00000580751 DUSP27Q5VZP5 1158 aa20.05■□□□□ 0.8
SS18-216ENST00000580751 SPINK5Q9NQ38 1064 aaPredicted RBP20.05■□□□□ 0.8
SS18-216ENST00000580751 ZBTB1Q9Y2K1 713 aa20.05■□□□□ 0.8
SS18-216ENST00000580751 ERBB4Q15303 1308 aa20.04■□□□□ 0.8
SS18-216ENST00000580751 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.04■□□□□ 0.8
SS18-216ENST00000580751 PHF14O94880 888 aa20.04■□□□□ 0.8
SS18-216ENST00000580751 CHMP4AQ9BY43 222 aa20.04■□□□□ 0.8
SS18-216ENST00000580751 A1BGP04217 495 aa20.03■□□□□ 0.8
SS18-216ENST00000580751 CANXP27824 592 aaKnown RBP20.03■□□□□ 0.8
SS18-216ENST00000580751 CASZ1Q86V15 1759 aa20.03■□□□□ 0.8
SS18-216ENST00000580751 IL6STP40189 918 aaPredicted RBP20.02■□□□□ 0.8
SS18-216ENST00000580751 SLFN5Q08AF3 891 aa20.02■□□□□ 0.8
SS18-216ENST00000580751 TRAPPC3LQ5T215 181 aa20.02■□□□□ 0.8
SS18-216ENST00000580751 HDGFL1Q5TGJ6 251 aa20.02■□□□□ 0.8
SS18-216ENST00000580751 NPM2Q86SE8 214 aaKnown RBP20.02■□□□□ 0.8
SS18-216ENST00000580751 AMIGO3Q86WK7 504 aa20.02■□□□□ 0.8
SS18-216ENST00000580751 C8orf58Q8NAV2 365 aa20.02■□□□□ 0.8
SS18-216ENST00000580751 COL15A1P39059 1388 aa20.02■□□□□ 0.8
SS18-216ENST00000580751 EIF2S2P20042 333 aaKnown RBP20.01■□□□□ 0.79
SS18-216ENST00000580751 COL23A1Q86Y22 540 aaPredicted RBP20.01■□□□□ 0.79
SS18-216ENST00000580751 ELL2O00472 640 aaPredicted RBP20■□□□□ 0.79
SS18-216ENST00000580751 MSH5O43196 834 aa20■□□□□ 0.79
SS18-216ENST00000580751 EIF5P55010 431 aaKnown RBP20■□□□□ 0.79
SS18-216ENST00000580751 TWISTNBQ3B726 338 aaPredicted RBP20■□□□□ 0.79
SS18-216ENST00000580751 CDCA7LQ96GN5 454 aa20■□□□□ 0.79
SS18-216ENST00000580751 C4AP0C0L4 1744 aa19.99■□□□□ 0.79
SS18-216ENST00000580751 A0A087WZG4 1122 aa19.99■□□□□ 0.79
SS18-216ENST00000580751 EXOSC9Q06265 439 aaKnown RBP19.99■□□□□ 0.79
SS18-216ENST00000580751 SLC16A10Q8TF71 515 aa19.99■□□□□ 0.79
SS18-216ENST00000580751 NBPF26B4DH59 902 aa19.98■□□□□ 0.79
SS18-216ENST00000580751 RFC4P35249 363 aa19.98■□□□□ 0.79
SS18-216ENST00000580751 NBPF10Q6P3W6 841 aaKnown RBP19.98■□□□□ 0.79
SS18-216ENST00000580751 NBPF15Q8N660 670 aa19.98■□□□□ 0.79
SS18-216ENST00000580751 TSPYL6Q8N831 410 aa19.98■□□□□ 0.79
SS18-216ENST00000580751 ARHGEF1Q92888 912 aaKnown RBP19.98■□□□□ 0.79
SS18-216ENST00000580751 ZNF330Q9Y3S2 320 aaPredicted RBP19.98■□□□□ 0.79
SS18-216ENST00000580751 PIP4K2AP48426 406 aaPredicted RBP19.97■□□□□ 0.79
SS18-216ENST00000580751 SMIM5Q71RC9 77 aa19.97■□□□□ 0.79
SS18-216ENST00000580751 TRMT2AQ8IZ69 625 aaKnown RBP19.97■□□□□ 0.79
SS18-216ENST00000580751 NECTIN2Q92692 538 aa19.97■□□□□ 0.79
SS18-216ENST00000580751 PDGFDQ9GZP0 370 aaPredicted RBP19.97■□□□□ 0.79
SS18-216ENST00000580751 DBF4Q9UBU7 674 aaPredicted RBP19.97■□□□□ 0.79
SS18-216ENST00000580751 CCDC30Q5VVM6 783 aa19.96■□□□□ 0.79
SS18-216ENST00000580751 DDX21Q9NR30 783 aaKnown RBP eCLIP19.96■□□□□ 0.79
SS18-216ENST00000580751 USP42Q9H9J4 1324 aaKnown RBP19.96■□□□□ 0.79
SS18-216ENST00000580751 MYL6BP14649 208 aa19.95■□□□□ 0.78
SS18-216ENST00000580751 MTFR1LQ9H019 292 aa19.95■□□□□ 0.78
SS18-216ENST00000580751 CHPF2Q9P2E5 772 aa19.95■□□□□ 0.78
SS18-216ENST00000580751 ZPR1O75312 459 aa19.94■□□□□ 0.78
SS18-216ENST00000580751 PDIA6Q15084 440 aa19.94■□□□□ 0.78
SS18-216ENST00000580751 NARFQ9UHQ1 456 aa19.94■□□□□ 0.78
SS18-216ENST00000580751 SCN7AQ01118 1682 aa19.94■□□□□ 0.78
SS18-216ENST00000580751 VAMP4O75379 141 aa19.93■□□□□ 0.78
SS18-216ENST00000580751 DZIP3Q86Y13 1208 aaKnown RBP19.93■□□□□ 0.78
SS18-216ENST00000580751 STK31Q9BXU1 1019 aa19.93■□□□□ 0.78
SS18-216ENST00000580751 HYPKQ9NX55 129 aa19.93■□□□□ 0.78
SS18-216ENST00000580751 ZBTB7AO95365 584 aa19.92■□□□□ 0.78
SS18-216ENST00000580751 PROSER3Q2NL68 480 aa19.92■□□□□ 0.78
SS18-216ENST00000580751 ARXQ96QS3 562 aa19.92■□□□□ 0.78
SS18-216ENST00000580751 ANXA1P04083 346 aa19.91■□□□□ 0.78
SS18-216ENST00000580751 CT47B1P0C2W7 299 aaPredicted RBP19.91■□□□□ 0.78
SS18-216ENST00000580751 KIF6Q6ZMV9 814 aa19.91■□□□□ 0.78
SS18-216ENST00000580751 LRP10Q7Z4F1 713 aa19.91■□□□□ 0.78
SS18-216ENST00000580751 ZNF428Q96B54 188 aa19.91■□□□□ 0.78
SS18-216ENST00000580751 TBC1D2BQ9UPU7 963 aa19.91■□□□□ 0.78
SS18-216ENST00000580751 BCORQ6W2J9 1755 aa19.9■□□□□ 0.78
SS18-216ENST00000580751 RGL2O15211 777 aa19.9■□□□□ 0.78
SS18-216ENST00000580751 GYS1P13807 737 aa19.9■□□□□ 0.78
SS18-216ENST00000580751 USPL1Q5W0Q7 1092 aa19.9■□□□□ 0.78
SS18-216ENST00000580751 NLGN1Q8N2Q7 840 aa19.9■□□□□ 0.78
SS18-216ENST00000580751 SPON1Q9HCB6 807 aa19.9■□□□□ 0.78
SS18-216ENST00000580751 SRP68Q9UHB9 627 aaKnown RBP19.9■□□□□ 0.78
SS18-216ENST00000580751 COL24A1Q17RW2 1714 aa19.89■□□□□ 0.77
SS18-216ENST00000580751 ZNF652Q9Y2D9 606 aa19.89■□□□□ 0.77
SS18-216ENST00000580751 CAMTA2O94983 1202 aa19.88■□□□□ 0.77
SS18-216ENST00000580751 MSL1Q68DK7 614 aa19.88■□□□□ 0.77
SS18-216ENST00000580751 XAGE3Q8WTP9 111 aa19.88■□□□□ 0.77
SS18-216ENST00000580751 CACNA1FO60840 1977 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 159.9 ms