RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ZNF232Q9UNY5 417 aa12.4□□□□□ -0.42
SS18-214ENST00000580003 PPP1R12BO60237 982 aaPredicted RBP12.39□□□□□ -0.43
SS18-214ENST00000580003 WFS1O76024 890 aa12.39□□□□□ -0.43
SS18-214ENST00000580003 NFX1Q12986 1120 aaKnown RBP12.39□□□□□ -0.43
SS18-214ENST00000580003 ZNF295-AS1Q8N0V1 137 aa12.39□□□□□ -0.43
SS18-214ENST00000580003 GAS2L2Q8NHY3 880 aa12.39□□□□□ -0.43
SS18-214ENST00000580003 STK32AQ8WU08 396 aa12.39□□□□□ -0.43
SS18-214ENST00000580003 SCG3Q8WXD2 468 aaKnown RBP12.39□□□□□ -0.43
SS18-214ENST00000580003 GPAMQ9HCL2 828 aa12.39□□□□□ -0.43
SS18-214ENST00000580003 PARP3Q9Y6F1 533 aa12.39□□□□□ -0.43
SS18-214ENST00000580003 SERTM1A2A2V5 107 aa12.38□□□□□ -0.43
SS18-214ENST00000580003 H7C1W4 665 aa12.38□□□□□ -0.43
SS18-214ENST00000580003 LGR5O75473 907 aa12.38□□□□□ -0.43
SS18-214ENST00000580003 MSX1P28360 303 aa12.38□□□□□ -0.43
SS18-214ENST00000580003 NOS2P35228 1153 aa12.38□□□□□ -0.43
SS18-214ENST00000580003 IRF7Q92985 503 aa12.38□□□□□ -0.43
SS18-214ENST00000580003 L3MBTL2Q969R5 705 aa12.38□□□□□ -0.43
SS18-214ENST00000580003 ATAD2Q6PL18 1390 aa12.38□□□□□ -0.43
SS18-214ENST00000580003 CDC14CA4D256 554 aa12.37□□□□□ -0.43
SS18-214ENST00000580003 CSB-PGBD3P0DP91 1061 aa12.37□□□□□ -0.43
SS18-214ENST00000580003 TATP17735 454 aaPredicted RBP12.37□□□□□ -0.43
SS18-214ENST00000580003 SWI5Q1ZZU3 235 aa12.37□□□□□ -0.43
SS18-214ENST00000580003 TREML4Q6UXN2 200 aa12.37□□□□□ -0.43
SS18-214ENST00000580003 PGBD3Q8N328 593 aa12.37□□□□□ -0.43
SS18-214ENST00000580003 C1orf216Q8TAB5 229 aa12.37□□□□□ -0.43
SS18-214ENST00000580003 TMEM164Q5U3C3 297 aa12.36□□□□□ -0.43
SS18-214ENST00000580003 ZDHHC1Q8WTX9 485 aa12.36□□□□□ -0.43
SS18-214ENST00000580003 CHMP7Q8WUX9 453 aaPredicted RBP12.36□□□□□ -0.43
SS18-214ENST00000580003 GMCL1Q96IK5 515 aa12.36□□□□□ -0.43
SS18-214ENST00000580003 ZDHHC3Q9NYG2 299 aa12.36□□□□□ -0.43
SS18-214ENST00000580003 SV2AQ7L0J3 742 aa12.35□□□□□ -0.43
SS18-214ENST00000580003 TRIM22Q8IYM9 498 aa12.35□□□□□ -0.43
SS18-214ENST00000580003 VWA5B2Q8N398 1253 aa12.35□□□□□ -0.43
SS18-214ENST00000580003 NANOS1Q8WY41 292 aaKnown RBP12.35□□□□□ -0.43
SS18-214ENST00000580003 IGFBP4P22692 258 aa12.34□□□□□ -0.43
SS18-214ENST00000580003 CUEDC1Q9NWM3 386 aaPredicted RBP12.34□□□□□ -0.43
SS18-214ENST00000580003 C21orf2O43822 256 aa12.33□□□□□ -0.44
SS18-214ENST00000580003 STAG2Q8N3U4 1231 aa12.33□□□□□ -0.44
SS18-214ENST00000580003 RUBCNLQ9H714 662 aa12.33□□□□□ -0.44
SS18-214ENST00000580003 EML1O00423 815 aa12.32□□□□□ -0.44
SS18-214ENST00000580003 VSIG8P0DPA2 414 aa12.32□□□□□ -0.44
SS18-214ENST00000580003 DBN1Q16643 649 aa12.32□□□□□ -0.44
SS18-214ENST00000580003 ARSJQ5FYB0 599 aaPredicted RBP12.32□□□□□ -0.44
SS18-214ENST00000580003 EFHC2Q5JST6 749 aa12.32□□□□□ -0.44
SS18-214ENST00000580003 NUCKS1Q9H1E3 243 aaKnown RBP12.32□□□□□ -0.44
SS18-214ENST00000580003 ATP4AP20648 1035 aa12.31□□□□□ -0.44
SS18-214ENST00000580003 WEE1P30291 646 aa12.31□□□□□ -0.44
SS18-214ENST00000580003 TXLNAP40222 546 aa12.31□□□□□ -0.44
SS18-214ENST00000580003 FAM69CQ0P6D2 419 aa12.31□□□□□ -0.44
SS18-214ENST00000580003 FOXR1Q6PIV2 292 aa12.31□□□□□ -0.44
SS18-214ENST00000580003 BICDL1Q6ZP65 573 aa12.31□□□□□ -0.44
SS18-214ENST00000580003 VTI1AQ96AJ9 217 aa12.31□□□□□ -0.44
SS18-214ENST00000580003 ZNF837Q96EG3 531 aaPredicted RBP12.31□□□□□ -0.44
SS18-214ENST00000580003 ERBB4Q15303 1308 aa12.31□□□□□ -0.44
SS18-214ENST00000580003 HIRAP54198 1017 aaPredicted RBP12.3□□□□□ -0.44
SS18-214ENST00000580003 LBRQ14739 615 aaKnown RBP12.3□□□□□ -0.44
SS18-214ENST00000580003 SH3PXD2AQ5TCZ1 1133 aa12.3□□□□□ -0.44
SS18-214ENST00000580003 PRIMPOLQ96LW4 560 aa12.3□□□□□ -0.44
SS18-214ENST00000580003 C2orf49Q9BVC5 232 aaPredicted RBP12.3□□□□□ -0.44
SS18-214ENST00000580003 CRISPLD1Q9H336 500 aa12.3□□□□□ -0.44
SS18-214ENST00000580003 HCN4Q9Y3Q4 1203 aa12.3□□□□□ -0.44
SS18-214ENST00000580003 FOXO3O43524 673 aa12.29□□□□□ -0.44
SS18-214ENST00000580003 PRMT3O60678 531 aa12.29□□□□□ -0.44
SS18-214ENST00000580003 POTEAQ6S8J7 498 aa12.28□□□□□ -0.44
SS18-214ENST00000580003 CLP1Q92989 425 aaKnown RBP12.28□□□□□ -0.44
SS18-214ENST00000580003 GJA3Q9Y6H8 435 aa12.28□□□□□ -0.44
SS18-214ENST00000580003 A0A1W2PNR3 127 aa12.27□□□□□ -0.45
SS18-214ENST00000580003 C1orf53Q5VUE5 145 aa12.27□□□□□ -0.45
SS18-214ENST00000580003 RHPN1Q8TCX5 695 aa12.27□□□□□ -0.45
SS18-214ENST00000580003 GTPBP3Q969Y2 492 aaKnown RBP12.27□□□□□ -0.45
SS18-214ENST00000580003 NGLY1Q96IV0 654 aa12.27□□□□□ -0.45
SS18-214ENST00000580003 TRERF1Q96PN7 1200 aa12.27□□□□□ -0.45
SS18-214ENST00000580003 PHACTR1Q9C0D0 580 aa12.27□□□□□ -0.45
SS18-214ENST00000580003 NEUROD4Q9HD90 331 aa12.27□□□□□ -0.45
SS18-214ENST00000580003 ZIC5Q96T25 663 aa12.26□□□□□ -0.45
SS18-214ENST00000580003 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.26□□□□□ -0.45
SS18-214ENST00000580003 GPC6Q9Y625 555 aaPredicted RBP12.26□□□□□ -0.45
SS18-214ENST00000580003 NLRP8Q86W28 1048 aa12.25□□□□□ -0.45
SS18-214ENST00000580003 GPR161Q8N6U8 529 aaKnown RBP12.25□□□□□ -0.45
SS18-214ENST00000580003 GMPRP36959 345 aa12.24□□□□□ -0.45
SS18-214ENST00000580003 LCE2AQ5TA79 106 aaPredicted RBP12.24□□□□□ -0.45
SS18-214ENST00000580003 FIGNL1Q6PIW4 674 aa12.24□□□□□ -0.45
SS18-214ENST00000580003 ALDH16A1Q8IZ83 802 aa12.24□□□□□ -0.45
SS18-214ENST00000580003 OCLNQ16625 522 aa12.23□□□□□ -0.45
SS18-214ENST00000580003 LCE2CQ5TA81 110 aa12.23□□□□□ -0.45
SS18-214ENST00000580003 CXXC1Q9P0U4 656 aaPredicted RBP12.23□□□□□ -0.45
SS18-214ENST00000580003 TMEM88BA6NKF7 163 aa12.22□□□□□ -0.45
SS18-214ENST00000580003 GPR25O00155 361 aa12.22□□□□□ -0.45
SS18-214ENST00000580003 ATP2B4P23634 1241 aa12.22□□□□□ -0.45
SS18-214ENST00000580003 FKBP5Q13451 457 aaPredicted RBP12.22□□□□□ -0.45
SS18-214ENST00000580003 PHF24Q9UPV7 400 aa12.22□□□□□ -0.45
SS18-214ENST00000580003 USTQ9Y2C2 406 aa12.22□□□□□ -0.45
SS18-214ENST00000580003 THBS1P07996 1170 aa12.21□□□□□ -0.45
SS18-214ENST00000580003 COL25A1Q9BXS0 654 aaPredicted RBP12.21□□□□□ -0.45
SS18-214ENST00000580003 HIF1AQ16665 826 aa12.2□□□□□ -0.46
SS18-214ENST00000580003 RTN1Q16799 776 aa12.2□□□□□ -0.46
SS18-214ENST00000580003 LRRC69Q6ZNQ3 347 aa12.2□□□□□ -0.46
SS18-214ENST00000580003 ZCCHC2Q9C0B9 1178 aaKnown RBP12.2□□□□□ -0.46
SS18-214ENST00000580003 ANKIB1Q9P2G1 1089 aa12.2□□□□□ -0.46
SS18-214ENST00000580003 PDE4CQ08493 712 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms