RNA–Protein interactions for RNA: ENST00000579358.1

MKS1-208, Transcript of Meckel syndrome, type 1, humanhuman

TSL 4

Gene MKS1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-208ENST00000579358 CHL1O00533 1208 aa13.12□□□□□ -0.31
MKS1-208ENST00000579358 MSH5O43196 834 aa13.12□□□□□ -0.31
MKS1-208ENST00000579358 PTGER2P43116 358 aa13.12□□□□□ -0.31
MKS1-208ENST00000579358 TRAPPC3LQ5T215 181 aa13.12□□□□□ -0.31
MKS1-208ENST00000579358 NGEFQ8N5V2 710 aa13.12□□□□□ -0.31
MKS1-208ENST00000579358 SGIP1Q9BQI5 828 aa13.12□□□□□ -0.31
MKS1-208ENST00000579358 ZBTB1Q9Y2K1 713 aa13.12□□□□□ -0.31
MKS1-208ENST00000579358 UBR3Q6ZT12 1888 aa13.12□□□□□ -0.31
MKS1-208ENST00000579358 KDM3BQ7LBC6 1761 aa13.12□□□□□ -0.31
MKS1-208ENST00000579358 ARHGEF1Q92888 912 aaKnown RBP13.11□□□□□ -0.31
MKS1-208ENST00000579358 CFAP44Q96MT7 982 aa13.11□□□□□ -0.31
MKS1-208ENST00000579358 ATF5Q9Y2D1 282 aaPredicted RBP13.11□□□□□ -0.31
MKS1-208ENST00000579358 COL15A1P39059 1388 aa13.1□□□□□ -0.31
MKS1-208ENST00000579358 GIGYF1O75420 1035 aaPredicted RBP13.1□□□□□ -0.31
MKS1-208ENST00000579358 ZNF853P0CG23 659 aa13.1□□□□□ -0.31
MKS1-208ENST00000579358 SMIM5Q71RC9 77 aa13.1□□□□□ -0.31
MKS1-208ENST00000579358 IFT57Q9NWB7 429 aa13.1□□□□□ -0.31
MKS1-208ENST00000579358 USP16Q9Y5T5 823 aa13.1□□□□□ -0.31
MKS1-208ENST00000579358 PRAMEF22A3QJZ6 481 aa13.09□□□□□ -0.31
MKS1-208ENST00000579358 POLD1P28340 1107 aa13.09□□□□□ -0.31
MKS1-208ENST00000579358 RFC4P35249 363 aa13.09□□□□□ -0.31
MKS1-208ENST00000579358 IL6STP40189 918 aaPredicted RBP13.09□□□□□ -0.31
MKS1-208ENST00000579358 GNAI1P63096 354 aa13.09□□□□□ -0.31
MKS1-208ENST00000579358 WWC1Q8IX03 1113 aa13.09□□□□□ -0.31
MKS1-208ENST00000579358 USP42Q9H9J4 1324 aaKnown RBP13.09□□□□□ -0.31
MKS1-208ENST00000579358 CANXP27824 592 aaKnown RBP13.08□□□□□ -0.32
MKS1-208ENST00000579358 EIF5P55010 431 aaKnown RBP13.08□□□□□ -0.32
MKS1-208ENST00000579358 LAS1LQ9Y4W2 734 aaKnown RBP13.08□□□□□ -0.32
MKS1-208ENST00000579358 IL16Q14005 1332 aa13.08□□□□□ -0.32
MKS1-208ENST00000579358 COL24A1Q17RW2 1714 aa13.08□□□□□ -0.32
MKS1-208ENST00000579358 A0A087WZG4 1122 aa13.07□□□□□ -0.32
MKS1-208ENST00000579358 A1BGP04217 495 aa13.07□□□□□ -0.32
MKS1-208ENST00000579358 HOXB7P09629 217 aa13.07□□□□□ -0.32
MKS1-208ENST00000579358 GYS1P13807 737 aa13.07□□□□□ -0.32
MKS1-208ENST00000579358 MSL1Q68DK7 614 aa13.07□□□□□ -0.32
MKS1-208ENST00000579358 MIER1Q8N108 512 aa13.07□□□□□ -0.32
MKS1-208ENST00000579358 NLGN1Q8N2Q7 840 aa13.07□□□□□ -0.32
MKS1-208ENST00000579358 MBIPQ9NS73 344 aa13.07□□□□□ -0.32
MKS1-208ENST00000579358 PPP1R1BQ9UD71 204 aaPredicted RBP13.07□□□□□ -0.32
MKS1-208ENST00000579358 ERBB4Q15303 1308 aa13.07□□□□□ -0.32
MKS1-208ENST00000579358 MYH14Q7Z406 1995 aaKnown RBP13.07□□□□□ -0.32
MKS1-208ENST00000579358 WDR63Q8IWG1 891 aa13.06□□□□□ -0.32
MKS1-208ENST00000579358 ARXQ96QS3 562 aa13.06□□□□□ -0.32
MKS1-208ENST00000579358 NARFQ9UHQ1 456 aa13.06□□□□□ -0.32
MKS1-208ENST00000579358 LAMB4A4D0S4 1761 aa13.05□□□□□ -0.32
MKS1-208ENST00000579358 ZPR1O75312 459 aa13.05□□□□□ -0.32
MKS1-208ENST00000579358 NPM2Q86SE8 214 aaKnown RBP13.05□□□□□ -0.32
MKS1-208ENST00000579358 C4AP0C0L4 1744 aa13.05□□□□□ -0.32
MKS1-208ENST00000579358 NBPF26B4DH59 902 aa13.04□□□□□ -0.32
MKS1-208ENST00000579358 NBPF10Q6P3W6 841 aaKnown RBP13.04□□□□□ -0.32
MKS1-208ENST00000579358 NBPF15Q8N660 670 aa13.04□□□□□ -0.32
MKS1-208ENST00000579358 SRP68Q9UHB9 627 aaKnown RBP13.04□□□□□ -0.32
MKS1-208ENST00000579358 SENP3-EIF4A1A0A087X0R7 540 aa13.03□□□□□ -0.32
MKS1-208ENST00000579358 RGL2O15211 777 aa13.03□□□□□ -0.32
MKS1-208ENST00000579358 KRT24Q2M2I5 525 aa13.03□□□□□ -0.32
MKS1-208ENST00000579358 USPL1Q5W0Q7 1092 aa13.03□□□□□ -0.32
MKS1-208ENST00000579358 ZNF330Q9Y3S2 320 aaPredicted RBP13.03□□□□□ -0.32
MKS1-208ENST00000579358 MMP10P09238 476 aa13.02□□□□□ -0.33
MKS1-208ENST00000579358 PIP4K2AP48426 406 aaPredicted RBP13.02□□□□□ -0.33
MKS1-208ENST00000579358 FKBP8Q14318 412 aa13.02□□□□□ -0.33
MKS1-208ENST00000579358 DZIP3Q86Y13 1208 aaKnown RBP13.02□□□□□ -0.33
MKS1-208ENST00000579358 SALL2Q9Y467 1007 aaPredicted RBP13.02□□□□□ -0.33
MKS1-208ENST00000579358 ZNF521Q96K83 1311 aa13.02□□□□□ -0.33
MKS1-208ENST00000579358 CAMTA2O94983 1202 aa13.01□□□□□ -0.33
MKS1-208ENST00000579358 EIF2S2P20042 333 aaKnown RBP13.01□□□□□ -0.33
MKS1-208ENST00000579358 DUSP27Q5VZP5 1158 aa13.01□□□□□ -0.33
MKS1-208ENST00000579358 CHMP4AQ9BY43 222 aa13.01□□□□□ -0.33
MKS1-208ENST00000579358 FHDC1Q9C0D6 1143 aaPredicted RBP13.01□□□□□ -0.33
MKS1-208ENST00000579358 BCL2L12Q9HB09 334 aa13.01□□□□□ -0.33
MKS1-208ENST00000579358 SCN7AQ01118 1682 aa13□□□□□ -0.33
MKS1-208ENST00000579358 TM4SF1P30408 202 aa13□□□□□ -0.33
MKS1-208ENST00000579358 PDIA6Q15084 440 aa13□□□□□ -0.33
MKS1-208ENST00000579358 HDGFL1Q5TGJ6 251 aa13□□□□□ -0.33
MKS1-208ENST00000579358 LRP10Q7Z4F1 713 aa13□□□□□ -0.33
MKS1-208ENST00000579358 TSR2Q969E8 191 aaKnown RBP13□□□□□ -0.33
MKS1-208ENST00000579358 TBC1D2BQ9UPU7 963 aa13□□□□□ -0.33
MKS1-208ENST00000579358 PARP3Q9Y6F1 533 aa13□□□□□ -0.33
MKS1-208ENST00000579358 SRCAPQ6ZRS2 3230 aa13□□□□□ -0.33
MKS1-208ENST00000579358 FANCIQ9NVI1 1328 aa12.99□□□□□ -0.33
MKS1-208ENST00000579358 POLRMTO00411 1230 aaKnown RBP12.99□□□□□ -0.33
MKS1-208ENST00000579358 MYL6BP14649 208 aa12.99□□□□□ -0.33
MKS1-208ENST00000579358 CLEC4GQ6UXB4 293 aa12.99□□□□□ -0.33
MKS1-208ENST00000579358 SYT17Q9BSW7 474 aa12.99□□□□□ -0.33
MKS1-208ENST00000579358 MYH16Q9H6N6 1097 aa12.99□□□□□ -0.33
MKS1-208ENST00000579358 DDX21Q9NR30 783 aaKnown RBP eCLIP12.99□□□□□ -0.33
MKS1-208ENST00000579358 ZNF652Q9Y2D9 606 aa12.99□□□□□ -0.33
MKS1-208ENST00000579358 CD2APQ9Y5K6 639 aa12.99□□□□□ -0.33
MKS1-208ENST00000579358 MAP3K15Q6ZN16 1313 aa12.98□□□□□ -0.33
MKS1-208ENST00000579358 ERVV-1B6SEH8 477 aa12.98□□□□□ -0.33
MKS1-208ENST00000579358 DDR1Q08345 913 aa12.98□□□□□ -0.33
MKS1-208ENST00000579358 NFIXQ14938 502 aa12.98□□□□□ -0.33
MKS1-208ENST00000579358 C8orf58Q8NAV2 365 aa12.98□□□□□ -0.33
MKS1-208ENST00000579358 DBF4Q9UBU7 674 aaPredicted RBP12.98□□□□□ -0.33
MKS1-208ENST00000579358 C10orf71Q711Q0 1435 aa12.97□□□□□ -0.33
MKS1-208ENST00000579358 GOLGA2Q08379 1002 aa12.97□□□□□ -0.33
MKS1-208ENST00000579358 PROSER3Q2NL68 480 aa12.97□□□□□ -0.33
MKS1-208ENST00000579358 KIF6Q6ZMV9 814 aa12.97□□□□□ -0.33
MKS1-208ENST00000579358 CHPF2Q9P2E5 772 aa12.97□□□□□ -0.33
MKS1-208ENST00000579358 CARMIL3Q8ND23 1372 aa12.96□□□□□ -0.33
MKS1-208ENST00000579358 TWISTNBQ3B726 338 aaPredicted RBP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms