RNA–Protein interactions for RNA: ENST00000578789.1

MKS1-207, Transcript of Meckel syndrome, type 1, humanhuman

TSL 4

Gene MKS1, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-207ENST00000578789 SOS1Q07889 1333 aaPredicted RBP19.04■□□□□ 0.64
MKS1-207ENST00000578789 MSL1Q68DK7 614 aa19.04■□□□□ 0.64
MKS1-207ENST00000578789 ARHGEF1Q92888 912 aaKnown RBP19.04■□□□□ 0.64
MKS1-207ENST00000578789 ZBTB1Q9Y2K1 713 aa19.03■□□□□ 0.64
MKS1-207ENST00000578789 STARD3NLO95772 234 aa19.02■□□□□ 0.64
MKS1-207ENST00000578789 MRS2Q9HD23 443 aa19.02■□□□□ 0.64
MKS1-207ENST00000578789 RRP7AQ9Y3A4 280 aaKnown RBP19.02■□□□□ 0.64
MKS1-207ENST00000578789 COL15A1P39059 1388 aa19.02■□□□□ 0.64
MKS1-207ENST00000578789 RFC4P35249 363 aa19.01■□□□□ 0.63
MKS1-207ENST00000578789 FHDC1Q9C0D6 1143 aaPredicted RBP19.01■□□□□ 0.63
MKS1-207ENST00000578789 TRIM35Q9UPQ4 493 aa19.01■□□□□ 0.63
MKS1-207ENST00000578789 USP42Q9H9J4 1324 aaKnown RBP19■□□□□ 0.63
MKS1-207ENST00000578789 SNRPA1P09661 255 aaKnown RBP19■□□□□ 0.63
MKS1-207ENST00000578789 BABAM1Q9NWV8 329 aa19■□□□□ 0.63
MKS1-207ENST00000578789 SCN7AQ01118 1682 aa19■□□□□ 0.63
MKS1-207ENST00000578789 GYS1P13807 737 aa18.99■□□□□ 0.63
MKS1-207ENST00000578789 MIS18AQ9NYP9 233 aa18.99■□□□□ 0.63
MKS1-207ENST00000578789 EIF5P55010 431 aaKnown RBP18.98■□□□□ 0.63
MKS1-207ENST00000578789 NEUROD2Q15784 382 aa18.98■□□□□ 0.63
MKS1-207ENST00000578789 SYT17Q9BSW7 474 aa18.98■□□□□ 0.63
MKS1-207ENST00000578789 BCORQ6W2J9 1755 aa18.97■□□□□ 0.63
MKS1-207ENST00000578789 PRAMEF22A3QJZ6 481 aa18.97■□□□□ 0.63
MKS1-207ENST00000578789 APAF1O14727 1248 aa18.97■□□□□ 0.63
MKS1-207ENST00000578789 CANXP27824 592 aaKnown RBP18.97■□□□□ 0.63
MKS1-207ENST00000578789 EIF4A1P60842 406 aaKnown RBP18.97■□□□□ 0.63
MKS1-207ENST00000578789 NLGN1Q8N2Q7 840 aa18.97■□□□□ 0.63
MKS1-207ENST00000578789 SRP68Q9UHB9 627 aaKnown RBP18.97■□□□□ 0.63
MKS1-207ENST00000578789 USP16Q9Y5T5 823 aa18.97■□□□□ 0.63
MKS1-207ENST00000578789 KIF13BQ9NQT8 1826 aa18.97■□□□□ 0.63
MKS1-207ENST00000578789 IL6STP40189 918 aaPredicted RBP18.96■□□□□ 0.63
MKS1-207ENST00000578789 TSPYL4Q9UJ04 414 aa18.96■□□□□ 0.63
MKS1-207ENST00000578789 GIGYF1O75420 1035 aaPredicted RBP18.95■□□□□ 0.62
MKS1-207ENST00000578789 NARFQ9UHQ1 456 aa18.95■□□□□ 0.62
MKS1-207ENST00000578789 A0A087WZG4 1122 aa18.94■□□□□ 0.62
MKS1-207ENST00000578789 A1BGP04217 495 aa18.94■□□□□ 0.62
MKS1-207ENST00000578789 MMP10P09238 476 aa18.94■□□□□ 0.62
MKS1-207ENST00000578789 CHL1O00533 1208 aa18.93■□□□□ 0.62
MKS1-207ENST00000578789 ZPR1O75312 459 aa18.93■□□□□ 0.62
MKS1-207ENST00000578789 USPL1Q5W0Q7 1092 aa18.93■□□□□ 0.62
MKS1-207ENST00000578789 FKBP8Q14318 412 aa18.92■□□□□ 0.62
MKS1-207ENST00000578789 CD2APQ9Y5K6 639 aa18.92■□□□□ 0.62
MKS1-207ENST00000578789 C10orf71Q711Q0 1435 aa18.91■□□□□ 0.62
MKS1-207ENST00000578789 KIAA1551Q9HCM1 1747 aa18.91■□□□□ 0.62
MKS1-207ENST00000578789 NRXN2Q9P2S2 1712 aa18.91■□□□□ 0.62
MKS1-207ENST00000578789 KLHL34Q8N239 644 aa18.91■□□□□ 0.62
MKS1-207ENST00000578789 BCL2L12Q9HB09 334 aa18.91■□□□□ 0.62
MKS1-207ENST00000578789 NBPF26B4DH59 902 aa18.9■□□□□ 0.62
MKS1-207ENST00000578789 NCBP3Q53F19 620 aaKnown RBP18.9■□□□□ 0.62
MKS1-207ENST00000578789 NBPF10Q6P3W6 841 aaKnown RBP18.9■□□□□ 0.62
MKS1-207ENST00000578789 NBPF15Q8N660 670 aa18.9■□□□□ 0.62
MKS1-207ENST00000578789 CFAP44Q96MT7 982 aa18.9■□□□□ 0.62
MKS1-207ENST00000578789 AFDNP55196 1824 aaKnown RBP18.89■□□□□ 0.61
MKS1-207ENST00000578789 ZNF853P0CG23 659 aa18.89■□□□□ 0.61
MKS1-207ENST00000578789 CALD1Q05682 793 aaKnown RBP18.89■□□□□ 0.61
MKS1-207ENST00000578789 CCDC27Q2M243 656 aa18.89■□□□□ 0.61
MKS1-207ENST00000578789 NLGN2Q8NFZ4 835 aa18.89■□□□□ 0.61
MKS1-207ENST00000578789 ERBB4Q15303 1308 aa18.89■□□□□ 0.61
MKS1-207ENST00000578789 TM4SF1P30408 202 aa18.88■□□□□ 0.61
MKS1-207ENST00000578789 PIP4K2AP48426 406 aaPredicted RBP18.88■□□□□ 0.61
MKS1-207ENST00000578789 DDR1Q08345 913 aa18.88■□□□□ 0.61
MKS1-207ENST00000578789 ZNF330Q9Y3S2 320 aaPredicted RBP18.88■□□□□ 0.61
MKS1-207ENST00000578789 PARP3Q9Y6F1 533 aa18.88■□□□□ 0.61
MKS1-207ENST00000578789 POLRMTO00411 1230 aaKnown RBP18.87■□□□□ 0.61
MKS1-207ENST00000578789 CAMTA2O94983 1202 aa18.87■□□□□ 0.61
MKS1-207ENST00000578789 NPM2Q86SE8 214 aaKnown RBP18.87■□□□□ 0.61
MKS1-207ENST00000578789 IFT57Q9NWB7 429 aa18.87■□□□□ 0.61
MKS1-207ENST00000578789 NFIXQ14938 502 aa18.86■□□□□ 0.61
MKS1-207ENST00000578789 DZIP3Q86Y13 1208 aaKnown RBP18.86■□□□□ 0.61
MKS1-207ENST00000578789 MBIPQ9NS73 344 aa18.86■□□□□ 0.61
MKS1-207ENST00000578789 TBC1D2BQ9UPU7 963 aa18.86■□□□□ 0.61
MKS1-207ENST00000578789 LAS1LQ9Y4W2 734 aaKnown RBP18.86■□□□□ 0.61
MKS1-207ENST00000578789 RGL2O15211 777 aa18.85■□□□□ 0.61
MKS1-207ENST00000578789 HOXB7P09629 217 aa18.85■□□□□ 0.61
MKS1-207ENST00000578789 GNAI1P63096 354 aa18.85■□□□□ 0.61
MKS1-207ENST00000578789 PXDNLA1KZ92 1463 aa18.84■□□□□ 0.61
MKS1-207ENST00000578789 N4BP2Q86UW6 1770 aaPredicted RBP18.83■□□□□ 0.61
MKS1-207ENST00000578789 DCAF8L1A6NGE4 600 aa18.83■□□□□ 0.6
MKS1-207ENST00000578789 KRT24Q2M2I5 525 aa18.83■□□□□ 0.6
MKS1-207ENST00000578789 WWC1Q8IX03 1113 aa18.83■□□□□ 0.6
MKS1-207ENST00000578789 FAM9BQ8IZU0 186 aa18.83■□□□□ 0.6
MKS1-207ENST00000578789 BRCA1P38398 1863 aaKnown RBP18.83■□□□□ 0.6
MKS1-207ENST00000578789 CCER2I3L3R5 266 aa18.82■□□□□ 0.6
MKS1-207ENST00000578789 TBC1D9BQ66K14 1250 aa18.82■□□□□ 0.6
MKS1-207ENST00000578789 CLEC4GQ6UXB4 293 aa18.82■□□□□ 0.6
MKS1-207ENST00000578789 CARMIL3Q8ND23 1372 aa18.81■□□□□ 0.6
MKS1-207ENST00000578789 NUP98P52948 1817 aa18.81■□□□□ 0.6
MKS1-207ENST00000578789 TGFB2P61812 414 aa18.81■□□□□ 0.6
MKS1-207ENST00000578789 PDIA6Q15084 440 aa18.81■□□□□ 0.6
MKS1-207ENST00000578789 LRP10Q7Z4F1 713 aa18.81■□□□□ 0.6
MKS1-207ENST00000578789 IL16Q14005 1332 aa18.8■□□□□ 0.6
MKS1-207ENST00000578789 ZNF652Q9Y2D9 606 aa18.8■□□□□ 0.6
MKS1-207ENST00000578789 DLEC1Q9Y238 1755 aa18.8■□□□□ 0.6
MKS1-207ENST00000578789 SENP3-EIF4A1A0A087X0R7 540 aa18.79■□□□□ 0.6
MKS1-207ENST00000578789 SERPINB2P05120 415 aa18.79■□□□□ 0.6
MKS1-207ENST00000578789 MYL6BP14649 208 aa18.79■□□□□ 0.6
MKS1-207ENST00000578789 EIF2S2P20042 333 aaKnown RBP18.79■□□□□ 0.6
MKS1-207ENST00000578789 NGEFQ8N5V2 710 aa18.79■□□□□ 0.6
MKS1-207ENST00000578789 ANKRD31Q8N7Z5 1873 aa18.79■□□□□ 0.6
MKS1-207ENST00000578789 MAP3K15Q6ZN16 1313 aa18.78■□□□□ 0.6
MKS1-207ENST00000578789 ATP10DQ9P241 1426 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms