RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.44□□□□□ -0.42
CCDC40-214ENST00000575431 GIGYF1O75420 1035 aaPredicted RBP12.44□□□□□ -0.42
CCDC40-214ENST00000575431 ZNF853P0CG23 659 aa12.44□□□□□ -0.42
CCDC40-214ENST00000575431 TRAPPC3LQ5T215 181 aa12.44□□□□□ -0.42
CCDC40-214ENST00000575431 INTS5Q6P9B9 1019 aaKnown RBP12.44□□□□□ -0.42
CCDC40-214ENST00000575431 NPM2Q86SE8 214 aaKnown RBP12.44□□□□□ -0.42
CCDC40-214ENST00000575431 CHMP4AQ9BY43 222 aa12.44□□□□□ -0.42
CCDC40-214ENST00000575431 COL23A1Q86Y22 540 aaPredicted RBP12.43□□□□□ -0.42
CCDC40-214ENST00000575431 MTFR1LQ9H019 292 aa12.43□□□□□ -0.42
CCDC40-214ENST00000575431 SPON1Q9HCB6 807 aa12.43□□□□□ -0.42
CCDC40-214ENST00000575431 TUBGCP6Q96RT7 1819 aa12.43□□□□□ -0.42
CCDC40-214ENST00000575431 SOS1Q07889 1333 aaPredicted RBP12.42□□□□□ -0.42
CCDC40-214ENST00000575431 ERBB4Q15303 1308 aa12.42□□□□□ -0.42
CCDC40-214ENST00000575431 A0A087WZG4 1122 aa12.42□□□□□ -0.42
CCDC40-214ENST00000575431 MSH5O43196 834 aa12.42□□□□□ -0.42
CCDC40-214ENST00000575431 HOXB7P09629 217 aa12.42□□□□□ -0.42
CCDC40-214ENST00000575431 IL6STP40189 918 aaPredicted RBP12.42□□□□□ -0.42
CCDC40-214ENST00000575431 MBIPQ9NS73 344 aa12.42□□□□□ -0.42
CCDC40-214ENST00000575431 USP16Q9Y5T5 823 aa12.42□□□□□ -0.42
CCDC40-214ENST00000575431 LAMB4A4D0S4 1761 aa12.42□□□□□ -0.42
CCDC40-214ENST00000575431 MYH14Q7Z406 1995 aaKnown RBP12.41□□□□□ -0.42
CCDC40-214ENST00000575431 PHF14O94880 888 aa12.41□□□□□ -0.42
CCDC40-214ENST00000575431 RFC4P35249 363 aa12.41□□□□□ -0.42
CCDC40-214ENST00000575431 SALL2Q9Y467 1007 aaPredicted RBP12.41□□□□□ -0.42
CCDC40-214ENST00000575431 CANXP27824 592 aaKnown RBP12.4□□□□□ -0.42
CCDC40-214ENST00000575431 EIF5P55010 431 aaKnown RBP12.4□□□□□ -0.42
CCDC40-214ENST00000575431 ARHGEF1Q92888 912 aaKnown RBP12.4□□□□□ -0.42
CCDC40-214ENST00000575431 MYH16Q9H6N6 1097 aa12.4□□□□□ -0.42
CCDC40-214ENST00000575431 ZBTB1Q9Y2K1 713 aa12.4□□□□□ -0.42
CCDC40-214ENST00000575431 A1BGP04217 495 aa12.39□□□□□ -0.43
CCDC40-214ENST00000575431 NLGN1Q8N2Q7 840 aa12.39□□□□□ -0.43
CCDC40-214ENST00000575431 PDGFDQ9GZP0 370 aaPredicted RBP12.39□□□□□ -0.43
CCDC40-214ENST00000575431 LRP5O75197 1615 aa12.39□□□□□ -0.43
CCDC40-214ENST00000575431 ZNF521Q96K83 1311 aa12.38□□□□□ -0.43
CCDC40-214ENST00000575431 PRAMEF22A3QJZ6 481 aa12.38□□□□□ -0.43
CCDC40-214ENST00000575431 RGL2O15211 777 aa12.38□□□□□ -0.43
CCDC40-214ENST00000575431 ZPR1O75312 459 aa12.38□□□□□ -0.43
CCDC40-214ENST00000575431 ZBTB7AO95365 584 aa12.38□□□□□ -0.43
CCDC40-214ENST00000575431 POLD1P28340 1107 aa12.38□□□□□ -0.43
CCDC40-214ENST00000575431 GOLGA2Q08379 1002 aa12.38□□□□□ -0.43
CCDC40-214ENST00000575431 NARFQ9UHQ1 456 aa12.38□□□□□ -0.43
CCDC40-214ENST00000575431 COL15A1P39059 1388 aa12.38□□□□□ -0.43
CCDC40-214ENST00000575431 COL24A1Q17RW2 1714 aa12.37□□□□□ -0.43
CCDC40-214ENST00000575431 SENP3-EIF4A1A0A087X0R7 540 aa12.37□□□□□ -0.43
CCDC40-214ENST00000575431 DUSP27Q5VZP5 1158 aa12.37□□□□□ -0.43
CCDC40-214ENST00000575431 AMIGO3Q86WK7 504 aa12.37□□□□□ -0.43
CCDC40-214ENST00000575431 USP42Q9H9J4 1324 aaKnown RBP12.37□□□□□ -0.43
CCDC40-214ENST00000575431 NBPF26B4DH59 902 aa12.36□□□□□ -0.43
CCDC40-214ENST00000575431 E9PSI1 815 aa12.36□□□□□ -0.43
CCDC40-214ENST00000575431 EIF2S2P20042 333 aaKnown RBP12.36□□□□□ -0.43
CCDC40-214ENST00000575431 NBPF10Q6P3W6 841 aaKnown RBP12.36□□□□□ -0.43
CCDC40-214ENST00000575431 NBPF15Q8N660 670 aa12.36□□□□□ -0.43
CCDC40-214ENST00000575431 ATF5Q9Y2D1 282 aaPredicted RBP12.36□□□□□ -0.43
CCDC40-214ENST00000575431 C4AP0C0L4 1744 aa12.36□□□□□ -0.43
CCDC40-214ENST00000575431 HDGFL1Q5TGJ6 251 aa12.35□□□□□ -0.43
CCDC40-214ENST00000575431 DZIP3Q86Y13 1208 aaKnown RBP12.35□□□□□ -0.43
CCDC40-214ENST00000575431 SGIP1Q9BQI5 828 aa12.35□□□□□ -0.43
CCDC40-214ENST00000575431 DDX21Q9NR30 783 aaKnown RBP eCLIP12.35□□□□□ -0.43
CCDC40-214ENST00000575431 DBF4Q9UBU7 674 aaPredicted RBP12.35□□□□□ -0.43
CCDC40-214ENST00000575431 PPP1R1BQ9UD71 204 aaPredicted RBP12.35□□□□□ -0.43
CCDC40-214ENST00000575431 ZNF330Q9Y3S2 320 aaPredicted RBP12.35□□□□□ -0.43
CCDC40-214ENST00000575431 FANCIQ9NVI1 1328 aa12.35□□□□□ -0.43
CCDC40-214ENST00000575431 GYS1P13807 737 aa12.34□□□□□ -0.43
CCDC40-214ENST00000575431 PTGER2P43116 358 aa12.34□□□□□ -0.43
CCDC40-214ENST00000575431 KRT24Q2M2I5 525 aa12.34□□□□□ -0.43
CCDC40-214ENST00000575431 TWISTNBQ3B726 338 aaPredicted RBP12.34□□□□□ -0.43
CCDC40-214ENST00000575431 CCDC30Q5VVM6 783 aa12.34□□□□□ -0.43
CCDC40-214ENST00000575431 USPL1Q5W0Q7 1092 aa12.34□□□□□ -0.43
CCDC40-214ENST00000575431 CLEC4GQ6UXB4 293 aa12.34□□□□□ -0.43
CCDC40-214ENST00000575431 SMIM5Q71RC9 77 aa12.34□□□□□ -0.43
CCDC40-214ENST00000575431 C8orf58Q8NAV2 365 aa12.34□□□□□ -0.43
CCDC40-214ENST00000575431 TSR2Q969E8 191 aaKnown RBP12.34□□□□□ -0.43
CCDC40-214ENST00000575431 ZNF652Q9Y2D9 606 aa12.34□□□□□ -0.43
CCDC40-214ENST00000575431 ELL2O00472 640 aaPredicted RBP12.33□□□□□ -0.44
CCDC40-214ENST00000575431 HNRNPUQ00839 825 aaKnown RBP eCLIP12.33□□□□□ -0.44
CCDC40-214ENST00000575431 SLFN5Q08AF3 891 aa12.33□□□□□ -0.44
CCDC40-214ENST00000575431 ARXQ96QS3 562 aa12.33□□□□□ -0.44
CCDC40-214ENST00000575431 HYPKQ9NX55 129 aa12.33□□□□□ -0.44
CCDC40-214ENST00000575431 TBC1D2BQ9UPU7 963 aa12.33□□□□□ -0.44
CCDC40-214ENST00000575431 ERVV-1B6SEH8 477 aa12.32□□□□□ -0.44
CCDC40-214ENST00000575431 MYL6BP14649 208 aa12.32□□□□□ -0.44
CCDC40-214ENST00000575431 PIP4K2AP48426 406 aaPredicted RBP12.32□□□□□ -0.44
CCDC40-214ENST00000575431 PDIA6Q15084 440 aa12.32□□□□□ -0.44
CCDC40-214ENST00000575431 MSL1Q68DK7 614 aa12.32□□□□□ -0.44
CCDC40-214ENST00000575431 KIF6Q6ZMV9 814 aa12.32□□□□□ -0.44
CCDC40-214ENST00000575431 STK31Q9BXU1 1019 aa12.32□□□□□ -0.44
CCDC40-214ENST00000575431 SRP68Q9UHB9 627 aaKnown RBP12.32□□□□□ -0.44
CCDC40-214ENST00000575431 CAMTA2O94983 1202 aa12.31□□□□□ -0.44
CCDC40-214ENST00000575431 MMP10P09238 476 aa12.31□□□□□ -0.44
CCDC40-214ENST00000575431 TM4SF1P30408 202 aa12.31□□□□□ -0.44
CCDC40-214ENST00000575431 EXOSC9Q06265 439 aaKnown RBP12.31□□□□□ -0.44
CCDC40-214ENST00000575431 FKBP8Q14318 412 aa12.31□□□□□ -0.44
CCDC40-214ENST00000575431 ZNF428Q96B54 188 aa12.31□□□□□ -0.44
CCDC40-214ENST00000575431 SPINK5Q9NQ38 1064 aaPredicted RBP12.31□□□□□ -0.44
CCDC40-214ENST00000575431 CHPF2Q9P2E5 772 aa12.31□□□□□ -0.44
CCDC40-214ENST00000575431 PARP3Q9Y6F1 533 aa12.31□□□□□ -0.44
CCDC40-214ENST00000575431 SCN7AQ01118 1682 aa12.31□□□□□ -0.44
CCDC40-214ENST00000575431 VAMP4O75379 141 aa12.3□□□□□ -0.44
CCDC40-214ENST00000575431 LRP10Q7Z4F1 713 aa12.3□□□□□ -0.44
CCDC40-214ENST00000575431 TSPYL6Q8N831 410 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms