RNA–Protein interactions for RNA: ENST00000562118.1

CDH1-204, Transcript of cadherin 1, humanhuman

TSL 2

Gene CDH1, Length 952 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-204ENST00000562118 SNRPA1P09661 255 aaKnown RBP17.56■□□□□ 0.4
CDH1-204ENST00000562118 ADRA2BP18089 450 aa17.56■□□□□ 0.4
CDH1-204ENST00000562118 WDR63Q8IWG1 891 aa17.56■□□□□ 0.4
CDH1-204ENST00000562118 PDGFDQ9GZP0 370 aaPredicted RBP17.56■□□□□ 0.4
CDH1-204ENST00000562118 TSPYL4Q9UJ04 414 aa17.56■□□□□ 0.4
CDH1-204ENST00000562118 SOS1Q07889 1333 aaPredicted RBP17.55■□□□□ 0.4
CDH1-204ENST00000562118 FLAD1Q8NFF5 587 aa17.55■□□□□ 0.4
CDH1-204ENST00000562118 AK7Q96M32 723 aa17.55■□□□□ 0.4
CDH1-204ENST00000562118 CCDC87Q9NVE4 849 aa17.55■□□□□ 0.4
CDH1-204ENST00000562118 PRAMEF22A3QJZ6 481 aa17.54■□□□□ 0.4
CDH1-204ENST00000562118 HOXB7P09629 217 aa17.54■□□□□ 0.4
CDH1-204ENST00000562118 GNAI1P63096 354 aa17.54■□□□□ 0.4
CDH1-204ENST00000562118 COL23A1Q86Y22 540 aaPredicted RBP17.54■□□□□ 0.4
CDH1-204ENST00000562118 SLC16A10Q8TF71 515 aa17.54■□□□□ 0.4
CDH1-204ENST00000562118 MBIPQ9NS73 344 aa17.54■□□□□ 0.4
CDH1-204ENST00000562118 TFCP2L1Q9NZI6 479 aa17.54■□□□□ 0.4
CDH1-204ENST00000562118 GNPATO15228 680 aa17.53■□□□□ 0.4
CDH1-204ENST00000562118 STARD3NLO95772 234 aa17.53■□□□□ 0.4
CDH1-204ENST00000562118 SGIP1Q9BQI5 828 aa17.53■□□□□ 0.4
CDH1-204ENST00000562118 ZBTB1Q9Y2K1 713 aa17.53■□□□□ 0.4
CDH1-204ENST00000562118 USP16Q9Y5T5 823 aa17.53■□□□□ 0.4
CDH1-204ENST00000562118 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.52■□□□□ 0.4
CDH1-204ENST00000562118 EIF5P55010 431 aaKnown RBP17.52■□□□□ 0.4
CDH1-204ENST00000562118 ERBB4Q15303 1308 aa17.51■□□□□ 0.39
CDH1-204ENST00000562118 RTCBQ9Y3I0 505 aaKnown RBP17.51■□□□□ 0.39
CDH1-204ENST00000562118 COL15A1P39059 1388 aa17.51■□□□□ 0.39
CDH1-204ENST00000562118 IL6STP40189 918 aaPredicted RBP17.5■□□□□ 0.39
CDH1-204ENST00000562118 LRP10Q7Z4F1 713 aa17.5■□□□□ 0.39
CDH1-204ENST00000562118 MTFR1LQ9H019 292 aa17.5■□□□□ 0.39
CDH1-204ENST00000562118 CACNA1FO60840 1977 aa17.49■□□□□ 0.39
CDH1-204ENST00000562118 NBPF26B4DH59 902 aa17.49■□□□□ 0.39
CDH1-204ENST00000562118 NBPF10Q6P3W6 841 aaKnown RBP17.49■□□□□ 0.39
CDH1-204ENST00000562118 NBPF15Q8N660 670 aa17.49■□□□□ 0.39
CDH1-204ENST00000562118 SPINK5Q9NQ38 1064 aaPredicted RBP17.49■□□□□ 0.39
CDH1-204ENST00000562118 NRXN2Q9P2S2 1712 aa17.49■□□□□ 0.39
CDH1-204ENST00000562118 USP42Q9H9J4 1324 aaKnown RBP17.48■□□□□ 0.39
CDH1-204ENST00000562118 PTGER2P43116 358 aa17.48■□□□□ 0.39
CDH1-204ENST00000562118 ARHGEF1Q92888 912 aaKnown RBP17.48■□□□□ 0.39
CDH1-204ENST00000562118 FANCIQ9NVI1 1328 aa17.47■□□□□ 0.39
CDH1-204ENST00000562118 KIF13BQ9NQT8 1826 aa17.47■□□□□ 0.39
CDH1-204ENST00000562118 RGL2O15211 777 aa17.47■□□□□ 0.39
CDH1-204ENST00000562118 A1BGP04217 495 aa17.47■□□□□ 0.39
CDH1-204ENST00000562118 KRT24Q2M2I5 525 aa17.47■□□□□ 0.39
CDH1-204ENST00000562118 TRAPPC3LQ5T215 181 aa17.47■□□□□ 0.39
CDH1-204ENST00000562118 SMIM5Q71RC9 77 aa17.47■□□□□ 0.39
CDH1-204ENST00000562118 PDIA6Q15084 440 aa17.46■□□□□ 0.39
CDH1-204ENST00000562118 TRMT2AQ8IZ69 625 aaKnown RBP17.46■□□□□ 0.39
CDH1-204ENST00000562118 SENP3-EIF4A1A0A087X0R7 540 aa17.45■□□□□ 0.38
CDH1-204ENST00000562118 LAS1LQ9Y4W2 734 aaKnown RBP17.45■□□□□ 0.38
CDH1-204ENST00000562118 NUP98P52948 1817 aa17.44■□□□□ 0.38
CDH1-204ENST00000562118 PHF14O94880 888 aa17.44■□□□□ 0.38
CDH1-204ENST00000562118 GYS1P13807 737 aa17.44■□□□□ 0.38
CDH1-204ENST00000562118 C8orf58Q8NAV2 365 aa17.44■□□□□ 0.38
CDH1-204ENST00000562118 TSR2Q969E8 191 aaKnown RBP17.44■□□□□ 0.38
CDH1-204ENST00000562118 SPON1Q9HCB6 807 aa17.44■□□□□ 0.38
CDH1-204ENST00000562118 NARFQ9UHQ1 456 aa17.44■□□□□ 0.38
CDH1-204ENST00000562118 ANKRD36CQ5JPF3 1778 aa17.43■□□□□ 0.38
CDH1-204ENST00000562118 A0A087WZG4 1122 aa17.43■□□□□ 0.38
CDH1-204ENST00000562118 ZBTB7AO95365 584 aa17.43■□□□□ 0.38
CDH1-204ENST00000562118 DUSP27Q5VZP5 1158 aa17.43■□□□□ 0.38
CDH1-204ENST00000562118 BCL2L12Q9HB09 334 aa17.43■□□□□ 0.38
CDH1-204ENST00000562118 AFDNP55196 1824 aaKnown RBP17.42■□□□□ 0.38
CDH1-204ENST00000562118 KIAA1551Q9HCM1 1747 aa17.42■□□□□ 0.38
CDH1-204ENST00000562118 CANXP27824 592 aaKnown RBP17.42■□□□□ 0.38
CDH1-204ENST00000562118 SALL2Q9Y467 1007 aaPredicted RBP17.42■□□□□ 0.38
CDH1-204ENST00000562118 E9PSI1 815 aa17.41■□□□□ 0.38
CDH1-204ENST00000562118 RFC4P35249 363 aa17.41■□□□□ 0.38
CDH1-204ENST00000562118 GOLGA2Q08379 1002 aa17.41■□□□□ 0.38
CDH1-204ENST00000562118 SLFN5Q08AF3 891 aa17.41■□□□□ 0.38
CDH1-204ENST00000562118 TSPYL6Q8N831 410 aa17.41■□□□□ 0.38
CDH1-204ENST00000562118 MYH16Q9H6N6 1097 aa17.41■□□□□ 0.38
CDH1-204ENST00000562118 CAMTA2O94983 1202 aa17.4■□□□□ 0.38
CDH1-204ENST00000562118 DDX21Q9NR30 783 aaKnown RBP eCLIP17.4■□□□□ 0.38
CDH1-204ENST00000562118 ARFGEF2Q9Y6D5 1785 aa17.4■□□□□ 0.38
CDH1-204ENST00000562118 PIP4K2AP48426 406 aaPredicted RBP17.39■□□□□ 0.37
CDH1-204ENST00000562118 PROSER3Q2NL68 480 aa17.39■□□□□ 0.37
CDH1-204ENST00000562118 HDGFL1Q5TGJ6 251 aa17.39■□□□□ 0.37
CDH1-204ENST00000562118 NLGN1Q8N2Q7 840 aa17.39■□□□□ 0.37
CDH1-204ENST00000562118 SRP68Q9UHB9 627 aaKnown RBP17.39■□□□□ 0.37
CDH1-204ENST00000562118 ZBED9Q6R2W3 1325 aa17.39■□□□□ 0.37
CDH1-204ENST00000562118 ATP10DQ9P241 1426 aa17.38■□□□□ 0.37
CDH1-204ENST00000562118 TM4SF1P30408 202 aa17.38■□□□□ 0.37
CDH1-204ENST00000562118 FKBP8Q14318 412 aa17.38■□□□□ 0.37
CDH1-204ENST00000562118 USPL1Q5W0Q7 1092 aa17.38■□□□□ 0.37
CDH1-204ENST00000562118 CHMP4AQ9BY43 222 aa17.38■□□□□ 0.37
CDH1-204ENST00000562118 ERVV-1B6SEH8 477 aa17.37■□□□□ 0.37
CDH1-204ENST00000562118 VAMP4O75379 141 aa17.37■□□□□ 0.37
CDH1-204ENST00000562118 TWISTNBQ3B726 338 aaPredicted RBP17.37■□□□□ 0.37
CDH1-204ENST00000562118 CLEC4GQ6UXB4 293 aa17.37■□□□□ 0.37
CDH1-204ENST00000562118 CHPF2Q9P2E5 772 aa17.37■□□□□ 0.37
CDH1-204ENST00000562118 DBF4Q9UBU7 674 aaPredicted RBP17.37■□□□□ 0.37
CDH1-204ENST00000562118 ATF5Q9Y2D1 282 aaPredicted RBP17.37■□□□□ 0.37
CDH1-204ENST00000562118 ZPR1O75312 459 aa17.36■□□□□ 0.37
CDH1-204ENST00000562118 EIF2S2P20042 333 aaKnown RBP17.36■□□□□ 0.37
CDH1-204ENST00000562118 EXOSC9Q06265 439 aaKnown RBP17.36■□□□□ 0.37
CDH1-204ENST00000562118 DZIP3Q86Y13 1208 aaKnown RBP17.36■□□□□ 0.37
CDH1-204ENST00000562118 C10orf71Q711Q0 1435 aa17.36■□□□□ 0.37
CDH1-204ENST00000562118 MSH5O43196 834 aa17.35■□□□□ 0.37
CDH1-204ENST00000562118 MSL1Q68DK7 614 aa17.35■□□□□ 0.37
CDH1-204ENST00000562118 CDCA7LQ96GN5 454 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms