RNA–Protein interactions for RNA: ENST00000561749.1

SMPD3-202, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-202ENST00000561749 LAMB4A4D0S4 1761 aa30.63■■■□□ 2.49
SMPD3-202ENST00000561749 ZBTB1Q9Y2K1 713 aa30.61■■■□□ 2.49
SMPD3-202ENST00000561749 SALL2Q9Y467 1007 aaPredicted RBP30.61■■■□□ 2.49
SMPD3-202ENST00000561749 STARD3NLO95772 234 aa30.6■■■□□ 2.49
SMPD3-202ENST00000561749 SNRPA1P09661 255 aaKnown RBP30.6■■■□□ 2.49
SMPD3-202ENST00000561749 EIF4A1P60842 406 aaKnown RBP30.6■■■□□ 2.49
SMPD3-202ENST00000561749 MSL1Q68DK7 614 aa30.6■■■□□ 2.49
SMPD3-202ENST00000561749 SLC16A10Q8TF71 515 aa30.6■■■□□ 2.49
SMPD3-202ENST00000561749 COL24A1Q17RW2 1714 aa30.59■■■□□ 2.49
SMPD3-202ENST00000561749 TRAPPC3LQ5T215 181 aa30.59■■■□□ 2.49
SMPD3-202ENST00000561749 TEX13AQ9BXU3 409 aaPredicted RBP30.59■■■□□ 2.49
SMPD3-202ENST00000561749 USP16Q9Y5T5 823 aa30.59■■■□□ 2.49
SMPD3-202ENST00000561749 CANXP27824 592 aaKnown RBP30.58■■■□□ 2.49
SMPD3-202ENST00000561749 ARHGEF1Q92888 912 aaKnown RBP30.57■■■□□ 2.48
SMPD3-202ENST00000561749 A1BGP04217 495 aa30.56■■■□□ 2.48
SMPD3-202ENST00000561749 PTGER2P43116 358 aa30.56■■■□□ 2.48
SMPD3-202ENST00000561749 SOS1Q07889 1333 aaPredicted RBP30.55■■■□□ 2.48
SMPD3-202ENST00000561749 CHL1O00533 1208 aa30.55■■■□□ 2.48
SMPD3-202ENST00000561749 BABAM1Q9NWV8 329 aa30.55■■■□□ 2.48
SMPD3-202ENST00000561749 ADRA2BP18089 450 aa30.54■■■□□ 2.48
SMPD3-202ENST00000561749 PIP4K2AP48426 406 aaPredicted RBP30.54■■■□□ 2.48
SMPD3-202ENST00000561749 GIGYF1O75420 1035 aaPredicted RBP30.53■■■□□ 2.48
SMPD3-202ENST00000561749 RFC4P35249 363 aa30.53■■■□□ 2.48
SMPD3-202ENST00000561749 ZNF330Q9Y3S2 320 aaPredicted RBP30.53■■■□□ 2.48
SMPD3-202ENST00000561749 WWC1Q8IX03 1113 aa30.52■■■□□ 2.48
SMPD3-202ENST00000561749 CFAP44Q96MT7 982 aa30.52■■■□□ 2.48
SMPD3-202ENST00000561749 SGIP1Q9BQI5 828 aa30.52■■■□□ 2.48
SMPD3-202ENST00000561749 PPP1R1BQ9UD71 204 aaPredicted RBP30.52■■■□□ 2.48
SMPD3-202ENST00000561749 SRP68Q9UHB9 627 aaKnown RBP30.52■■■□□ 2.48
SMPD3-202ENST00000561749 COL15A1P39059 1388 aa30.52■■■□□ 2.48
SMPD3-202ENST00000561749 CALD1Q05682 793 aaKnown RBP30.51■■■□□ 2.47
SMPD3-202ENST00000561749 CCDC27Q2M243 656 aa30.51■■■□□ 2.47
SMPD3-202ENST00000561749 KRT24Q2M2I5 525 aa30.5■■■□□ 2.47
SMPD3-202ENST00000561749 MBIPQ9NS73 344 aa30.5■■■□□ 2.47
SMPD3-202ENST00000561749 ZNF853P0CG23 659 aa30.49■■■□□ 2.47
SMPD3-202ENST00000561749 IFT57Q9NWB7 429 aa30.49■■■□□ 2.47
SMPD3-202ENST00000561749 GNAI1P63096 354 aa30.48■■■□□ 2.47
SMPD3-202ENST00000561749 POLD1P28340 1107 aa30.47■■■□□ 2.47
SMPD3-202ENST00000561749 EIF5P55010 431 aaKnown RBP30.46■■■□□ 2.47
SMPD3-202ENST00000561749 USP42Q9H9J4 1324 aaKnown RBP30.46■■■□□ 2.47
SMPD3-202ENST00000561749 GYS1P13807 737 aa30.45■■■□□ 2.47
SMPD3-202ENST00000561749 NBPF26B4DH59 902 aa30.44■■■□□ 2.46
SMPD3-202ENST00000561749 IL6STP40189 918 aaPredicted RBP30.44■■■□□ 2.46
SMPD3-202ENST00000561749 NCBP3Q53F19 620 aaKnown RBP30.44■■■□□ 2.46
SMPD3-202ENST00000561749 NBPF10Q6P3W6 841 aaKnown RBP30.44■■■□□ 2.46
SMPD3-202ENST00000561749 NBPF15Q8N660 670 aa30.44■■■□□ 2.46
SMPD3-202ENST00000561749 ARXQ96QS3 562 aa30.44■■■□□ 2.46
SMPD3-202ENST00000561749 ZPR1O75312 459 aa30.43■■■□□ 2.46
SMPD3-202ENST00000561749 EIF2S2P20042 333 aaKnown RBP30.43■■■□□ 2.46
SMPD3-202ENST00000561749 USPL1Q5W0Q7 1092 aa30.43■■■□□ 2.46
SMPD3-202ENST00000561749 NECTIN2Q92692 538 aa30.42■■■□□ 2.46
SMPD3-202ENST00000561749 TSR2Q969E8 191 aaKnown RBP30.42■■■□□ 2.46
SMPD3-202ENST00000561749 SCN7AQ01118 1682 aa30.42■■■□□ 2.46
SMPD3-202ENST00000561749 NPM2Q86SE8 214 aaKnown RBP30.41■■■□□ 2.46
SMPD3-202ENST00000561749 NARFQ9UHQ1 456 aa30.41■■■□□ 2.46
SMPD3-202ENST00000561749 TBC1D2BQ9UPU7 963 aa30.41■■■□□ 2.46
SMPD3-202ENST00000561749 BCORQ6W2J9 1755 aa30.41■■■□□ 2.46
SMPD3-202ENST00000561749 A0A087WZG4 1122 aa30.4■■■□□ 2.46
SMPD3-202ENST00000561749 FKBP8Q14318 412 aa30.4■■■□□ 2.46
SMPD3-202ENST00000561749 KLHL34Q8N239 644 aa30.4■■■□□ 2.46
SMPD3-202ENST00000561749 MMP10P09238 476 aa30.38■■■□□ 2.45
SMPD3-202ENST00000561749 MYL6BP14649 208 aa30.38■■■□□ 2.45
SMPD3-202ENST00000561749 NLGN1Q8N2Q7 840 aa30.38■■■□□ 2.45
SMPD3-202ENST00000561749 NGEFQ8N5V2 710 aa30.38■■■□□ 2.45
SMPD3-202ENST00000561749 ELL2O00472 640 aaPredicted RBP30.37■■■□□ 2.45
SMPD3-202ENST00000561749 DUSP27Q5VZP5 1158 aa30.37■■■□□ 2.45
SMPD3-202ENST00000561749 WDR63Q8IWG1 891 aa30.37■■■□□ 2.45
SMPD3-202ENST00000561749 IL16Q14005 1332 aa30.37■■■□□ 2.45
SMPD3-202ENST00000561749 DZIP3Q86Y13 1208 aaKnown RBP30.36■■■□□ 2.45
SMPD3-202ENST00000561749 FHDC1Q9C0D6 1143 aaPredicted RBP30.36■■■□□ 2.45
SMPD3-202ENST00000561749 BCL2L12Q9HB09 334 aa30.36■■■□□ 2.45
SMPD3-202ENST00000561749 ANXA1P04083 346 aa30.34■■■□□ 2.45
SMPD3-202ENST00000561749 C8orf58Q8NAV2 365 aa30.34■■■□□ 2.45
SMPD3-202ENST00000561749 PROSER3Q2NL68 480 aa30.33■■■□□ 2.45
SMPD3-202ENST00000561749 SPINK5Q9NQ38 1064 aaPredicted RBP30.33■■■□□ 2.45
SMPD3-202ENST00000561749 ERBB4Q15303 1308 aa30.32■■■□□ 2.44
SMPD3-202ENST00000561749 CAMTA2O94983 1202 aa30.32■■■□□ 2.44
SMPD3-202ENST00000561749 HDGFL1Q5TGJ6 251 aa30.32■■■□□ 2.44
SMPD3-202ENST00000561749 FANCIQ9NVI1 1328 aa30.31■■■□□ 2.44
SMPD3-202ENST00000561749 PDIA6Q15084 440 aa30.31■■■□□ 2.44
SMPD3-202ENST00000561749 AFDNP55196 1824 aaKnown RBP30.31■■■□□ 2.44
SMPD3-202ENST00000561749 ZNF521Q96K83 1311 aa30.3■■■□□ 2.44
SMPD3-202ENST00000561749 HOXB7P09629 217 aa30.3■■■□□ 2.44
SMPD3-202ENST00000561749 DDR1Q08345 913 aa30.3■■■□□ 2.44
SMPD3-202ENST00000561749 BICDL1Q6ZP65 573 aa30.3■■■□□ 2.44
SMPD3-202ENST00000561749 TSPYL6Q8N831 410 aa30.3■■■□□ 2.44
SMPD3-202ENST00000561749 SRCAPQ6ZRS2 3230 aa30.29■■■□□ 2.44
SMPD3-202ENST00000561749 CHPF2Q9P2E5 772 aa30.29■■■□□ 2.44
SMPD3-202ENST00000561749 PARP3Q9Y6F1 533 aa30.29■■■□□ 2.44
SMPD3-202ENST00000561749 NUP98P52948 1817 aa30.29■■■□□ 2.44
SMPD3-202ENST00000561749 NFIXQ14938 502 aa30.28■■■□□ 2.44
SMPD3-202ENST00000561749 TTLL7Q6ZT98 887 aa30.28■■■□□ 2.44
SMPD3-202ENST00000561749 SYT17Q9BSW7 474 aa30.28■■■□□ 2.44
SMPD3-202ENST00000561749 TM4SF1P30408 202 aa30.27■■■□□ 2.44
SMPD3-202ENST00000561749 TBC1D9BQ66K14 1250 aa30.27■■■□□ 2.44
SMPD3-202ENST00000561749 LRP10Q7Z4F1 713 aa30.25■■■□□ 2.43
SMPD3-202ENST00000561749 DDX21Q9NR30 783 aaKnown RBP eCLIP30.25■■■□□ 2.43
SMPD3-202ENST00000561749 POLRMTO00411 1230 aaKnown RBP30.24■■■□□ 2.43
SMPD3-202ENST00000561749 KIF6Q6ZMV9 814 aa30.24■■■□□ 2.43
SMPD3-202ENST00000561749 KIF13BQ9NQT8 1826 aa30.24■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms