RNA–Protein interactions for RNA: ENST00000559494.1

TSPAN3-207, Transcript of tetraspanin 3, humanhuman

TSL 5 BASIC

Gene TSPAN3, Length 1,326 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-207ENST00000559494 CASZ1Q86V15 1759 aa26.49■■□□□ 1.83
TSPAN3-207ENST00000559494 PHF14O94880 888 aa26.49■■□□□ 1.83
TSPAN3-207ENST00000559494 STARD3NLO95772 234 aa26.49■■□□□ 1.83
TSPAN3-207ENST00000559494 SSFA2P28290 1259 aa26.49■■□□□ 1.83
TSPAN3-207ENST00000559494 CALD1Q05682 793 aaKnown RBP26.49■■□□□ 1.83
TSPAN3-207ENST00000559494 FLAD1Q8NFF5 587 aa26.49■■□□□ 1.83
TSPAN3-207ENST00000559494 RTCBQ9Y3I0 505 aaKnown RBP26.49■■□□□ 1.83
TSPAN3-207ENST00000559494 GIGYF1O75420 1035 aaPredicted RBP26.48■■□□□ 1.83
TSPAN3-207ENST00000559494 MSH5O43196 834 aa26.47■■□□□ 1.83
TSPAN3-207ENST00000559494 ZBTB7AO95365 584 aa26.47■■□□□ 1.83
TSPAN3-207ENST00000559494 IFT57Q9NWB7 429 aa26.47■■□□□ 1.83
TSPAN3-207ENST00000559494 ZBTB1Q9Y2K1 713 aa26.47■■□□□ 1.83
TSPAN3-207ENST00000559494 A1BGP04217 495 aa26.46■■□□□ 1.83
TSPAN3-207ENST00000559494 GNAI1P63096 354 aa26.46■■□□□ 1.83
TSPAN3-207ENST00000559494 MBIPQ9NS73 344 aa26.46■■□□□ 1.83
TSPAN3-207ENST00000559494 SRCAPQ6ZRS2 3230 aa26.46■■□□□ 1.83
TSPAN3-207ENST00000559494 TRAPPC3LQ5T215 181 aa26.45■■□□□ 1.83
TSPAN3-207ENST00000559494 NGEFQ8N5V2 710 aa26.45■■□□□ 1.83
TSPAN3-207ENST00000559494 SLC16A10Q8TF71 515 aa26.45■■□□□ 1.83
TSPAN3-207ENST00000559494 ARHGEF1Q92888 912 aaKnown RBP26.44■■□□□ 1.82
TSPAN3-207ENST00000559494 ATF5Q9Y2D1 282 aaPredicted RBP26.44■■□□□ 1.82
TSPAN3-207ENST00000559494 CANXP27824 592 aaKnown RBP26.43■■□□□ 1.82
TSPAN3-207ENST00000559494 KRT24Q2M2I5 525 aa26.43■■□□□ 1.82
TSPAN3-207ENST00000559494 WDR63Q8IWG1 891 aa26.43■■□□□ 1.82
TSPAN3-207ENST00000559494 SOS1Q07889 1333 aaPredicted RBP26.43■■□□□ 1.82
TSPAN3-207ENST00000559494 ADRA2BP18089 450 aa26.42■■□□□ 1.82
TSPAN3-207ENST00000559494 MTFR1LQ9H019 292 aa26.42■■□□□ 1.82
TSPAN3-207ENST00000559494 SPON1Q9HCB6 807 aa26.41■■□□□ 1.82
TSPAN3-207ENST00000559494 IL16Q14005 1332 aa26.41■■□□□ 1.82
TSPAN3-207ENST00000559494 EIF5P55010 431 aaKnown RBP26.4■■□□□ 1.82
TSPAN3-207ENST00000559494 PIP4K2AP48426 406 aaPredicted RBP26.39■■□□□ 1.82
TSPAN3-207ENST00000559494 ZNF521Q96K83 1311 aa26.38■■□□□ 1.81
TSPAN3-207ENST00000559494 NBPF26B4DH59 902 aa26.38■■□□□ 1.81
TSPAN3-207ENST00000559494 RFC4P35249 363 aa26.38■■□□□ 1.81
TSPAN3-207ENST00000559494 NBPF10Q6P3W6 841 aaKnown RBP26.38■■□□□ 1.81
TSPAN3-207ENST00000559494 NBPF15Q8N660 670 aa26.38■■□□□ 1.81
TSPAN3-207ENST00000559494 TSR2Q969E8 191 aaKnown RBP26.38■■□□□ 1.81
TSPAN3-207ENST00000559494 IL6STP40189 918 aaPredicted RBP26.37■■□□□ 1.81
TSPAN3-207ENST00000559494 PTGER2P43116 358 aa26.37■■□□□ 1.81
TSPAN3-207ENST00000559494 SGIP1Q9BQI5 828 aa26.37■■□□□ 1.81
TSPAN3-207ENST00000559494 SPINK5Q9NQ38 1064 aaPredicted RBP26.37■■□□□ 1.81
TSPAN3-207ENST00000559494 EIF2S2P20042 333 aaKnown RBP26.36■■□□□ 1.81
TSPAN3-207ENST00000559494 MSL1Q68DK7 614 aa26.36■■□□□ 1.81
TSPAN3-207ENST00000559494 SRP68Q9UHB9 627 aaKnown RBP26.36■■□□□ 1.81
TSPAN3-207ENST00000559494 COL15A1P39059 1388 aa26.35■■□□□ 1.81
TSPAN3-207ENST00000559494 DUSP27Q5VZP5 1158 aa26.35■■□□□ 1.81
TSPAN3-207ENST00000559494 C8orf58Q8NAV2 365 aa26.34■■□□□ 1.81
TSPAN3-207ENST00000559494 GYS1P13807 737 aa26.33■■□□□ 1.81
TSPAN3-207ENST00000559494 ZNF330Q9Y3S2 320 aaPredicted RBP26.33■■□□□ 1.81
TSPAN3-207ENST00000559494 LAMB4A4D0S4 1761 aa26.32■■□□□ 1.8
TSPAN3-207ENST00000559494 ELL2O00472 640 aaPredicted RBP26.32■■□□□ 1.8
TSPAN3-207ENST00000559494 NECTIN2Q92692 538 aa26.32■■□□□ 1.8
TSPAN3-207ENST00000559494 NARFQ9UHQ1 456 aa26.32■■□□□ 1.8
TSPAN3-207ENST00000559494 USP42Q9H9J4 1324 aaKnown RBP26.32■■□□□ 1.8
TSPAN3-207ENST00000559494 C4AP0C0L4 1744 aa26.31■■□□□ 1.8
TSPAN3-207ENST00000559494 A0A087WZG4 1122 aa26.31■■□□□ 1.8
TSPAN3-207ENST00000559494 HOXB7P09629 217 aa26.31■■□□□ 1.8
TSPAN3-207ENST00000559494 TBC1D2BQ9UPU7 963 aa26.31■■□□□ 1.8
TSPAN3-207ENST00000559494 COL24A1Q17RW2 1714 aa26.3■■□□□ 1.8
TSPAN3-207ENST00000559494 ZPR1O75312 459 aa26.3■■□□□ 1.8
TSPAN3-207ENST00000559494 PDIA6Q15084 440 aa26.3■■□□□ 1.8
TSPAN3-207ENST00000559494 USPL1Q5W0Q7 1092 aa26.3■■□□□ 1.8
TSPAN3-207ENST00000559494 TSPYL6Q8N831 410 aa26.3■■□□□ 1.8
TSPAN3-207ENST00000559494 FANCIQ9NVI1 1328 aa26.3■■□□□ 1.8
TSPAN3-207ENST00000559494 LRP5O75197 1615 aa26.3■■□□□ 1.8
TSPAN3-207ENST00000559494 MYL6BP14649 208 aa26.28■■□□□ 1.8
TSPAN3-207ENST00000559494 FKBP8Q14318 412 aa26.28■■□□□ 1.8
TSPAN3-207ENST00000559494 NPM2Q86SE8 214 aaKnown RBP26.28■■□□□ 1.8
TSPAN3-207ENST00000559494 NLGN1Q8N2Q7 840 aa26.28■■□□□ 1.8
TSPAN3-207ENST00000559494 ARXQ96QS3 562 aa26.28■■□□□ 1.8
TSPAN3-207ENST00000559494 BCL2L12Q9HB09 334 aa26.28■■□□□ 1.8
TSPAN3-207ENST00000559494 ERBB4Q15303 1308 aa26.28■■□□□ 1.8
TSPAN3-207ENST00000559494 ANXA1P04083 346 aa26.27■■□□□ 1.8
TSPAN3-207ENST00000559494 POLD1P28340 1107 aa26.27■■□□□ 1.8
TSPAN3-207ENST00000559494 GOLGA2Q08379 1002 aa26.27■■□□□ 1.8
TSPAN3-207ENST00000559494 PROSER3Q2NL68 480 aa26.27■■□□□ 1.8
TSPAN3-207ENST00000559494 HDGFL1Q5TGJ6 251 aa26.27■■□□□ 1.8
TSPAN3-207ENST00000559494 LRP10Q7Z4F1 713 aa26.26■■□□□ 1.79
TSPAN3-207ENST00000559494 DZIP3Q86Y13 1208 aaKnown RBP26.26■■□□□ 1.79
TSPAN3-207ENST00000559494 MYH16Q9H6N6 1097 aa26.25■■□□□ 1.79
TSPAN3-207ENST00000559494 CAMTA2O94983 1202 aa26.24■■□□□ 1.79
TSPAN3-207ENST00000559494 EXOSC9Q06265 439 aaKnown RBP26.24■■□□□ 1.79
TSPAN3-207ENST00000559494 DDX21Q9NR30 783 aaKnown RBP eCLIP26.24■■□□□ 1.79
TSPAN3-207ENST00000559494 CDCA7LQ96GN5 454 aa26.23■■□□□ 1.79
TSPAN3-207ENST00000559494 CHPF2Q9P2E5 772 aa26.23■■□□□ 1.79
TSPAN3-207ENST00000559494 PPP1R1BQ9UD71 204 aaPredicted RBP26.23■■□□□ 1.79
TSPAN3-207ENST00000559494 MMP10P09238 476 aa26.22■■□□□ 1.79
TSPAN3-207ENST00000559494 TM4SF1P30408 202 aa26.22■■□□□ 1.79
TSPAN3-207ENST00000559494 SLFN5Q08AF3 891 aa26.22■■□□□ 1.79
TSPAN3-207ENST00000559494 TWISTNBQ3B726 338 aaPredicted RBP26.22■■□□□ 1.79
TSPAN3-207ENST00000559494 TTLL7Q6ZT98 887 aa26.22■■□□□ 1.79
TSPAN3-207ENST00000559494 HNRNPUQ00839 825 aaKnown RBP eCLIP26.21■■□□□ 1.79
TSPAN3-207ENST00000559494 E9PSI1 815 aa26.2■■□□□ 1.79
TSPAN3-207ENST00000559494 DBF4Q9UBU7 674 aaPredicted RBP26.2■■□□□ 1.79
TSPAN3-207ENST00000559494 VAMP4O75379 141 aa26.19■■□□□ 1.78
TSPAN3-207ENST00000559494 NFIXQ14938 502 aa26.18■■□□□ 1.78
TSPAN3-207ENST00000559494 TRMT2AQ8IZ69 625 aaKnown RBP26.18■■□□□ 1.78
TSPAN3-207ENST00000559494 DDR1Q08345 913 aa26.17■■□□□ 1.78
TSPAN3-207ENST00000559494 HLFQ16534 295 aa26.17■■□□□ 1.78
TSPAN3-207ENST00000559494 CCDC30Q5VVM6 783 aa26.17■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms