RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 TTC5Q8N0Z6 440 aa12.78□□□□□ -0.36
SPG11-214ENST00000558989 HOXD11P31277 338 aaPredicted RBP12.77□□□□□ -0.37
SPG11-214ENST00000558989 WDR43Q15061 677 aaKnown RBP eCLIP12.77□□□□□ -0.37
SPG11-214ENST00000558989 UBR2Q8IWV8 1755 aa12.77□□□□□ -0.37
SPG11-214ENST00000558989 KCNQ3O43525 872 aa12.76□□□□□ -0.37
SPG11-214ENST00000558989 POLD1P28340 1107 aa12.76□□□□□ -0.37
SPG11-214ENST00000558989 THUMPD2Q9BTF0 503 aaKnown RBP12.76□□□□□ -0.37
SPG11-214ENST00000558989 FHDC1Q9C0D6 1143 aaPredicted RBP12.76□□□□□ -0.37
SPG11-214ENST00000558989 RRP7AQ9Y3A4 280 aaKnown RBP12.76□□□□□ -0.37
SPG11-214ENST00000558989 ZNF831Q5JPB2 1677 aa12.76□□□□□ -0.37
SPG11-214ENST00000558989 SENP3-EIF4A1A0A087X0R7 540 aa12.76□□□□□ -0.37
SPG11-214ENST00000558989 BTBD11A6QL63 1104 aa12.76□□□□□ -0.37
SPG11-214ENST00000558989 CRKLP46109 303 aaKnown RBP12.76□□□□□ -0.37
SPG11-214ENST00000558989 SLC16A10Q8TF71 515 aa12.76□□□□□ -0.37
SPG11-214ENST00000558989 PLEKHF1Q96S99 279 aa12.76□□□□□ -0.37
SPG11-214ENST00000558989 MIS18AQ9NYP9 233 aa12.76□□□□□ -0.37
SPG11-214ENST00000558989 RTCBQ9Y3I0 505 aaKnown RBP12.76□□□□□ -0.37
SPG11-214ENST00000558989 KCPQ6ZWJ8 1503 aa12.76□□□□□ -0.37
SPG11-214ENST00000558989 C4AP0C0L4 1744 aa12.75□□□□□ -0.37
SPG11-214ENST00000558989 PDIA4P13667 645 aaKnown RBP12.75□□□□□ -0.37
SPG11-214ENST00000558989 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.75□□□□□ -0.37
SPG11-214ENST00000558989 SGIP1Q9BQI5 828 aa12.75□□□□□ -0.37
SPG11-214ENST00000558989 CCDC184Q52MB2 194 aa12.74□□□□□ -0.37
SPG11-214ENST00000558989 TRAPPC3LQ5T215 181 aa12.74□□□□□ -0.37
SPG11-214ENST00000558989 FLAD1Q8NFF5 587 aa12.74□□□□□ -0.37
SPG11-214ENST00000558989 ZNF496Q96IT1 587 aaPredicted RBP12.74□□□□□ -0.37
SPG11-214ENST00000558989 ZNF330Q9Y3S2 320 aaPredicted RBP12.74□□□□□ -0.37
SPG11-214ENST00000558989 COL24A1Q17RW2 1714 aa12.74□□□□□ -0.37
SPG11-214ENST00000558989 HMGB2P26583 209 aaKnown RBP12.74□□□□□ -0.37
SPG11-214ENST00000558989 SSFA2P28290 1259 aa12.74□□□□□ -0.37
SPG11-214ENST00000558989 NFE2L2Q16236 605 aa12.74□□□□□ -0.37
SPG11-214ENST00000558989 ZNF790Q6PG37 636 aa12.74□□□□□ -0.37
SPG11-214ENST00000558989 CEMIPQ8WUJ3 1361 aa12.73□□□□□ -0.37
SPG11-214ENST00000558989 CANXP27824 592 aaKnown RBP12.73□□□□□ -0.37
SPG11-214ENST00000558989 ARHGEF1Q92888 912 aaKnown RBP12.73□□□□□ -0.37
SPG11-214ENST00000558989 PNNQ9H307 717 aaKnown RBP12.73□□□□□ -0.37
SPG11-214ENST00000558989 ADAMTS8Q9UP79 889 aa12.73□□□□□ -0.37
SPG11-214ENST00000558989 CNTNAP4Q9C0A0 1308 aa12.73□□□□□ -0.37
SPG11-214ENST00000558989 RPS6KA4O75676 772 aa12.72□□□□□ -0.37
SPG11-214ENST00000558989 RFC4P35249 363 aa12.72□□□□□ -0.37
SPG11-214ENST00000558989 RIPK4P57078 832 aa12.72□□□□□ -0.37
SPG11-214ENST00000558989 ARID3AQ99856 593 aa12.72□□□□□ -0.37
SPG11-214ENST00000558989 SYT17Q9BSW7 474 aa12.72□□□□□ -0.37
SPG11-214ENST00000558989 SRP68Q9UHB9 627 aaKnown RBP12.72□□□□□ -0.37
SPG11-214ENST00000558989 PRAMEF22A3QJZ6 481 aa12.72□□□□□ -0.37
SPG11-214ENST00000558989 ANP32CO43423 234 aa12.72□□□□□ -0.37
SPG11-214ENST00000558989 PIP4K2AP48426 406 aaPredicted RBP12.72□□□□□ -0.37
SPG11-214ENST00000558989 INTS5Q6P9B9 1019 aaKnown RBP12.72□□□□□ -0.37
SPG11-214ENST00000558989 CCDC87Q9NVE4 849 aa12.72□□□□□ -0.37
SPG11-214ENST00000558989 WWC3Q9ULE0 1092 aa12.72□□□□□ -0.37
SPG11-214ENST00000558989 ZBTB1Q9Y2K1 713 aa12.72□□□□□ -0.37
SPG11-214ENST00000558989 HMGB1P09429 215 aaKnown RBP12.71□□□□□ -0.38
SPG11-214ENST00000558989 CYP19A1P11511 503 aaPredicted RBP12.71□□□□□ -0.38
SPG11-214ENST00000558989 RC3H1Q5TC82 1133 aaKnown RBP12.71□□□□□ -0.38
SPG11-214ENST00000558989 FMNL2Q96PY5 1086 aa12.71□□□□□ -0.38
SPG11-214ENST00000558989 HEG1Q9ULI3 1381 aa12.7□□□□□ -0.38
SPG11-214ENST00000558989 CICQ96RK0 1608 aaPredicted RBP12.7□□□□□ -0.38
SPG11-214ENST00000558989 KDM3BQ7LBC6 1761 aa12.7□□□□□ -0.38
SPG11-214ENST00000558989 HTATSF1O43719 755 aaKnown RBP12.69□□□□□ -0.38
SPG11-214ENST00000558989 TMPOP42166 694 aaKnown RBP12.69□□□□□ -0.38
SPG11-214ENST00000558989 TAF7Q15545 349 aaPredicted RBP12.69□□□□□ -0.38
SPG11-214ENST00000558989 HS6ST3Q8IZP7 471 aa12.69□□□□□ -0.38
SPG11-214ENST00000558989 NLGN2Q8NFZ4 835 aa12.69□□□□□ -0.38
SPG11-214ENST00000558989 A1BGP04217 495 aa12.69□□□□□ -0.38
SPG11-214ENST00000558989 LAS1LQ9Y4W2 734 aaKnown RBP12.69□□□□□ -0.38
SPG11-214ENST00000558989 MMP10P09238 476 aa12.68□□□□□ -0.38
SPG11-214ENST00000558989 RUNDC1Q96C34 613 aa12.68□□□□□ -0.38
SPG11-214ENST00000558989 USP16Q9Y5T5 823 aa12.68□□□□□ -0.38
SPG11-214ENST00000558989 DCAF8L1A6NGE4 600 aa12.67□□□□□ -0.38
SPG11-214ENST00000558989 STARD3NLO95772 234 aa12.67□□□□□ -0.38
SPG11-214ENST00000558989 GYS1P13807 737 aa12.67□□□□□ -0.38
SPG11-214ENST00000558989 USPL1Q5W0Q7 1092 aa12.67□□□□□ -0.38
SPG11-214ENST00000558989 MRS2Q9HD23 443 aa12.67□□□□□ -0.38
SPG11-214ENST00000558989 COL15A1P39059 1388 aa12.67□□□□□ -0.38
SPG11-214ENST00000558989 ZPR1O75312 459 aa12.67□□□□□ -0.38
SPG11-214ENST00000558989 NECTIN2Q92692 538 aa12.67□□□□□ -0.38
SPG11-214ENST00000558989 SOS1Q07889 1333 aaPredicted RBP12.67□□□□□ -0.38
SPG11-214ENST00000558989 N4BP2Q86UW6 1770 aaPredicted RBP12.66□□□□□ -0.38
SPG11-214ENST00000558989 C1orf115Q9H7X2 142 aa12.66□□□□□ -0.38
SPG11-214ENST00000558989 APAF1O14727 1248 aa12.65□□□□□ -0.38
SPG11-214ENST00000558989 BICDL1Q6ZP65 573 aa12.65□□□□□ -0.38
SPG11-214ENST00000558989 TSPYL4Q9UJ04 414 aa12.65□□□□□ -0.38
SPG11-214ENST00000558989 TBC1D2BQ9UPU7 963 aa12.65□□□□□ -0.38
SPG11-214ENST00000558989 USP42Q9H9J4 1324 aaKnown RBP12.65□□□□□ -0.38
SPG11-214ENST00000558989 AFDNP55196 1824 aaKnown RBP12.65□□□□□ -0.38
SPG11-214ENST00000558989 LAMB4A4D0S4 1761 aa12.65□□□□□ -0.38
SPG11-214ENST00000558989 SNRPA1P09661 255 aaKnown RBP12.65□□□□□ -0.39
SPG11-214ENST00000558989 GPR162Q16538 588 aa12.65□□□□□ -0.39
SPG11-214ENST00000558989 NLGN1Q8N2Q7 840 aa12.65□□□□□ -0.39
SPG11-214ENST00000558989 NGEFQ8N5V2 710 aa12.65□□□□□ -0.39
SPG11-214ENST00000558989 TEX13AQ9BXU3 409 aaPredicted RBP12.65□□□□□ -0.39
SPG11-214ENST00000558989 PARP3Q9Y6F1 533 aa12.64□□□□□ -0.39
SPG11-214ENST00000558989 UTRNP46939 3433 aa12.63□□□□□ -0.39
SPG11-214ENST00000558989 LMOD3Q0VAK6 560 aa12.63□□□□□ -0.39
SPG11-214ENST00000558989 PNISRQ8TF01 805 aaKnown RBP12.63□□□□□ -0.39
SPG11-214ENST00000558989 TRIM35Q9UPQ4 493 aa12.63□□□□□ -0.39
SPG11-214ENST00000558989 SALL2Q9Y467 1007 aaPredicted RBP12.63□□□□□ -0.39
SPG11-214ENST00000558989 EIF4A1P60842 406 aaKnown RBP12.62□□□□□ -0.39
SPG11-214ENST00000558989 NARFQ9UHQ1 456 aa12.62□□□□□ -0.39
SPG11-214ENST00000558989 CHD4Q14839 1912 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms