RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 LAMB4A4D0S4 1761 aa16.4■□□□□ 0.22
SLIRP-209ENST00000557342 SMIM5Q71RC9 77 aa16.39■□□□□ 0.21
SLIRP-209ENST00000557342 ARHGEF1Q92888 912 aaKnown RBP16.39■□□□□ 0.21
SLIRP-209ENST00000557342 THUMPD2Q9BTF0 503 aaKnown RBP16.39■□□□□ 0.21
SLIRP-209ENST00000557342 BABAM1Q9NWV8 329 aa16.39■□□□□ 0.21
SLIRP-209ENST00000557342 SNRPA1P09661 255 aaKnown RBP16.38■□□□□ 0.21
SLIRP-209ENST00000557342 MSL1Q68DK7 614 aa16.38■□□□□ 0.21
SLIRP-209ENST00000557342 APAF1O14727 1248 aa16.37■□□□□ 0.21
SLIRP-209ENST00000557342 MIS18AQ9NYP9 233 aa16.37■□□□□ 0.21
SLIRP-209ENST00000557342 ZBTB1Q9Y2K1 713 aa16.37■□□□□ 0.21
SLIRP-209ENST00000557342 SOS1Q07889 1333 aaPredicted RBP16.37■□□□□ 0.21
SLIRP-209ENST00000557342 NLGN1Q8N2Q7 840 aa16.36■□□□□ 0.21
SLIRP-209ENST00000557342 TSPYL4Q9UJ04 414 aa16.36■□□□□ 0.21
SLIRP-209ENST00000557342 TRIM35Q9UPQ4 493 aa16.36■□□□□ 0.21
SLIRP-209ENST00000557342 CANXP27824 592 aaKnown RBP16.35■□□□□ 0.21
SLIRP-209ENST00000557342 COL15A1P39059 1388 aa16.35■□□□□ 0.21
SLIRP-209ENST00000557342 A0A087WZG4 1122 aa16.34■□□□□ 0.21
SLIRP-209ENST00000557342 ZPR1O75312 459 aa16.34■□□□□ 0.21
SLIRP-209ENST00000557342 EIF4A1P60842 406 aaKnown RBP16.34■□□□□ 0.21
SLIRP-209ENST00000557342 NPM2Q86SE8 214 aaKnown RBP16.34■□□□□ 0.21
SLIRP-209ENST00000557342 FHDC1Q9C0D6 1143 aaPredicted RBP16.34■□□□□ 0.21
SLIRP-209ENST00000557342 USP16Q9Y5T5 823 aa16.34■□□□□ 0.21
SLIRP-209ENST00000557342 USP42Q9H9J4 1324 aaKnown RBP16.34■□□□□ 0.21
SLIRP-209ENST00000557342 GYS1P13807 737 aa16.33■□□□□ 0.2
SLIRP-209ENST00000557342 IL6STP40189 918 aaPredicted RBP16.33■□□□□ 0.2
SLIRP-209ENST00000557342 EIF5P55010 431 aaKnown RBP16.33■□□□□ 0.2
SLIRP-209ENST00000557342 CALD1Q05682 793 aaKnown RBP16.33■□□□□ 0.2
SLIRP-209ENST00000557342 SYT17Q9BSW7 474 aa16.33■□□□□ 0.2
SLIRP-209ENST00000557342 GIGYF1O75420 1035 aaPredicted RBP16.32■□□□□ 0.2
SLIRP-209ENST00000557342 A1BGP04217 495 aa16.32■□□□□ 0.2
SLIRP-209ENST00000557342 NARFQ9UHQ1 456 aa16.32■□□□□ 0.2
SLIRP-209ENST00000557342 PRAMEF22A3QJZ6 481 aa16.31■□□□□ 0.2
SLIRP-209ENST00000557342 DCAF8L1A6NGE4 600 aa16.31■□□□□ 0.2
SLIRP-209ENST00000557342 KLHL34Q8N239 644 aa16.31■□□□□ 0.2
SLIRP-209ENST00000557342 SRP68Q9UHB9 627 aaKnown RBP16.31■□□□□ 0.2
SLIRP-209ENST00000557342 SCN7AQ01118 1682 aa16.3■□□□□ 0.2
SLIRP-209ENST00000557342 CHL1O00533 1208 aa16.3■□□□□ 0.2
SLIRP-209ENST00000557342 MMP10P09238 476 aa16.3■□□□□ 0.2
SLIRP-209ENST00000557342 NCBP3Q53F19 620 aaKnown RBP16.3■□□□□ 0.2
SLIRP-209ENST00000557342 LAS1LQ9Y4W2 734 aaKnown RBP16.3■□□□□ 0.2
SLIRP-209ENST00000557342 BCORQ6W2J9 1755 aa16.3■□□□□ 0.2
SLIRP-209ENST00000557342 KIF13BQ9NQT8 1826 aa16.29■□□□□ 0.2
SLIRP-209ENST00000557342 CCDC27Q2M243 656 aa16.29■□□□□ 0.2
SLIRP-209ENST00000557342 USPL1Q5W0Q7 1092 aa16.29■□□□□ 0.2
SLIRP-209ENST00000557342 CFAP44Q96MT7 982 aa16.29■□□□□ 0.2
SLIRP-209ENST00000557342 ZNF330Q9Y3S2 320 aaPredicted RBP16.29■□□□□ 0.2
SLIRP-209ENST00000557342 CD2APQ9Y5K6 639 aa16.29■□□□□ 0.2
SLIRP-209ENST00000557342 PARP3Q9Y6F1 533 aa16.29■□□□□ 0.2
SLIRP-209ENST00000557342 FKBP8Q14318 412 aa16.28■□□□□ 0.2
SLIRP-209ENST00000557342 FAM9BQ8IZU0 186 aa16.28■□□□□ 0.2
SLIRP-209ENST00000557342 GNAI1P63096 354 aa16.27■□□□□ 0.2
SLIRP-209ENST00000557342 IFT57Q9NWB7 429 aa16.27■□□□□ 0.2
SLIRP-209ENST00000557342 AFDNP55196 1824 aaKnown RBP16.26■□□□□ 0.19
SLIRP-209ENST00000557342 ERBB4Q15303 1308 aa16.26■□□□□ 0.19
SLIRP-209ENST00000557342 NBPF26B4DH59 902 aa16.25■□□□□ 0.19
SLIRP-209ENST00000557342 CCER2I3L3R5 266 aa16.25■□□□□ 0.19
SLIRP-209ENST00000557342 ZNF853P0CG23 659 aa16.25■□□□□ 0.19
SLIRP-209ENST00000557342 TM4SF1P30408 202 aa16.25■□□□□ 0.19
SLIRP-209ENST00000557342 PIP4K2AP48426 406 aaPredicted RBP16.25■□□□□ 0.19
SLIRP-209ENST00000557342 NBPF10Q6P3W6 841 aaKnown RBP16.25■□□□□ 0.19
SLIRP-209ENST00000557342 DZIP3Q86Y13 1208 aaKnown RBP16.25■□□□□ 0.19
SLIRP-209ENST00000557342 NBPF15Q8N660 670 aa16.25■□□□□ 0.19
SLIRP-209ENST00000557342 TBC1D2BQ9UPU7 963 aa16.25■□□□□ 0.19
SLIRP-209ENST00000557342 HOXB7P09629 217 aa16.24■□□□□ 0.19
SLIRP-209ENST00000557342 WWC1Q8IX03 1113 aa16.24■□□□□ 0.19
SLIRP-209ENST00000557342 NGEFQ8N5V2 710 aa16.24■□□□□ 0.19
SLIRP-209ENST00000557342 BCL2L12Q9HB09 334 aa16.24■□□□□ 0.19
SLIRP-209ENST00000557342 MBIPQ9NS73 344 aa16.24■□□□□ 0.19
SLIRP-209ENST00000557342 NRXN2Q9P2S2 1712 aa16.24■□□□□ 0.19
SLIRP-209ENST00000557342 RGL2O15211 777 aa16.23■□□□□ 0.19
SLIRP-209ENST00000557342 EIF2S2P20042 333 aaKnown RBP16.23■□□□□ 0.19
SLIRP-209ENST00000557342 NFIXQ14938 502 aa16.23■□□□□ 0.19
SLIRP-209ENST00000557342 DIEXFQ68CQ4 756 aaKnown RBP16.23■□□□□ 0.19
SLIRP-209ENST00000557342 ZNF652Q9Y2D9 606 aa16.23■□□□□ 0.19
SLIRP-209ENST00000557342 NUP98P52948 1817 aa16.23■□□□□ 0.19
SLIRP-209ENST00000557342 C10orf71Q711Q0 1435 aa16.22■□□□□ 0.19
SLIRP-209ENST00000557342 POLRMTO00411 1230 aaKnown RBP16.22■□□□□ 0.19
SLIRP-209ENST00000557342 CAMTA2O94983 1202 aa16.22■□□□□ 0.19
SLIRP-209ENST00000557342 CLEC4GQ6UXB4 293 aa16.22■□□□□ 0.19
SLIRP-209ENST00000557342 NLGN2Q8NFZ4 835 aa16.22■□□□□ 0.19
SLIRP-209ENST00000557342 N4BP2Q86UW6 1770 aaPredicted RBP16.22■□□□□ 0.19
SLIRP-209ENST00000557342 IL16Q14005 1332 aa16.21■□□□□ 0.19
SLIRP-209ENST00000557342 DDR1Q08345 913 aa16.21■□□□□ 0.19
SLIRP-209ENST00000557342 KIAA1551Q9HCM1 1747 aa16.21■□□□□ 0.19
SLIRP-209ENST00000557342 MYL6BP14649 208 aa16.2■□□□□ 0.18
SLIRP-209ENST00000557342 TGFB2P61812 414 aa16.2■□□□□ 0.18
SLIRP-209ENST00000557342 TBC1D9BQ66K14 1250 aa16.2■□□□□ 0.18
SLIRP-209ENST00000557342 KIF6Q6ZMV9 814 aa16.2■□□□□ 0.18
SLIRP-209ENST00000557342 WDR63Q8IWG1 891 aa16.2■□□□□ 0.18
SLIRP-209ENST00000557342 CHMP4AQ9BY43 222 aa16.2■□□□□ 0.18
SLIRP-209ENST00000557342 CARMIL3Q8ND23 1372 aa16.19■□□□□ 0.18
SLIRP-209ENST00000557342 SENP3-EIF4A1A0A087X0R7 540 aa16.19■□□□□ 0.18
SLIRP-209ENST00000557342 SERPINB2P05120 415 aa16.19■□□□□ 0.18
SLIRP-209ENST00000557342 KRT24Q2M2I5 525 aa16.19■□□□□ 0.18
SLIRP-209ENST00000557342 DUSP27Q5VZP5 1158 aa16.19■□□□□ 0.18
SLIRP-209ENST00000557342 BICDL1Q6ZP65 573 aa16.19■□□□□ 0.18
SLIRP-209ENST00000557342 SETDB2Q96T68 719 aa16.19■□□□□ 0.18
SLIRP-209ENST00000557342 CHD4Q14839 1912 aa16.19■□□□□ 0.18
SLIRP-209ENST00000557342 BRCA1P38398 1863 aaKnown RBP16.18■□□□□ 0.18
SLIRP-209ENST00000557342 ERVV-1B6SEH8 477 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms