RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 INTS5Q6P9B9 1019 aaKnown RBP17.76■□□□□ 0.43
SHMT2-228ENST00000557302 SMIM5Q71RC9 77 aa17.76■□□□□ 0.43
SHMT2-228ENST00000557302 ATF5Q9Y2D1 282 aaPredicted RBP17.76■□□□□ 0.43
SHMT2-228ENST00000557302 SENP3-EIF4A1A0A087X0R7 540 aa17.75■□□□□ 0.43
SHMT2-228ENST00000557302 EIF4A1P60842 406 aaKnown RBP17.75■□□□□ 0.43
SHMT2-228ENST00000557302 TRAPPC3LQ5T215 181 aa17.75■□□□□ 0.43
SHMT2-228ENST00000557302 MIER1Q8N108 512 aa17.75■□□□□ 0.43
SHMT2-228ENST00000557302 LAS1LQ9Y4W2 734 aaKnown RBP17.75■□□□□ 0.43
SHMT2-228ENST00000557302 KDM3BQ7LBC6 1761 aa17.75■□□□□ 0.43
SHMT2-228ENST00000557302 MYH14Q7Z406 1995 aaKnown RBP17.74■□□□□ 0.43
SHMT2-228ENST00000557302 CHL1O00533 1208 aa17.74■□□□□ 0.43
SHMT2-228ENST00000557302 CCDC27Q2M243 656 aa17.74■□□□□ 0.43
SHMT2-228ENST00000557302 NCBP3Q53F19 620 aaKnown RBP17.74■□□□□ 0.43
SHMT2-228ENST00000557302 ZBTB1Q9Y2K1 713 aa17.74■□□□□ 0.43
SHMT2-228ENST00000557302 PRAMEF22A3QJZ6 481 aa17.73■□□□□ 0.43
SHMT2-228ENST00000557302 ARHGEF1Q92888 912 aaKnown RBP17.73■□□□□ 0.43
SHMT2-228ENST00000557302 CFAP44Q96MT7 982 aa17.73■□□□□ 0.43
SHMT2-228ENST00000557302 SOS1Q07889 1333 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-228ENST00000557302 GIGYF1O75420 1035 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-228ENST00000557302 CANXP27824 592 aaKnown RBP17.72■□□□□ 0.43
SHMT2-228ENST00000557302 RFC4P35249 363 aa17.72■□□□□ 0.43
SHMT2-228ENST00000557302 IFT57Q9NWB7 429 aa17.72■□□□□ 0.43
SHMT2-228ENST00000557302 USP16Q9Y5T5 823 aa17.72■□□□□ 0.43
SHMT2-228ENST00000557302 PTGER2P43116 358 aa17.71■□□□□ 0.43
SHMT2-228ENST00000557302 GNAI1P63096 354 aa17.71■□□□□ 0.43
SHMT2-228ENST00000557302 WWC1Q8IX03 1113 aa17.71■□□□□ 0.43
SHMT2-228ENST00000557302 A1BGP04217 495 aa17.7■□□□□ 0.42
SHMT2-228ENST00000557302 POLD1P28340 1107 aa17.7■□□□□ 0.42
SHMT2-228ENST00000557302 MSL1Q68DK7 614 aa17.7■□□□□ 0.42
SHMT2-228ENST00000557302 PPP1R1BQ9UD71 204 aaPredicted RBP17.7■□□□□ 0.42
SHMT2-228ENST00000557302 SALL2Q9Y467 1007 aaPredicted RBP17.7■□□□□ 0.42
SHMT2-228ENST00000557302 COL15A1P39059 1388 aa17.69■□□□□ 0.42
SHMT2-228ENST00000557302 ZNF853P0CG23 659 aa17.69■□□□□ 0.42
SHMT2-228ENST00000557302 NGEFQ8N5V2 710 aa17.69■□□□□ 0.42
SHMT2-228ENST00000557302 SGIP1Q9BQI5 828 aa17.69■□□□□ 0.42
SHMT2-228ENST00000557302 MBIPQ9NS73 344 aa17.69■□□□□ 0.42
SHMT2-228ENST00000557302 IL6STP40189 918 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-228ENST00000557302 EIF5P55010 431 aaKnown RBP17.68■□□□□ 0.42
SHMT2-228ENST00000557302 NPM2Q86SE8 214 aaKnown RBP17.68■□□□□ 0.42
SHMT2-228ENST00000557302 ZNF330Q9Y3S2 320 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-228ENST00000557302 A0A087WZG4 1122 aa17.67■□□□□ 0.42
SHMT2-228ENST00000557302 IL16Q14005 1332 aa17.67■□□□□ 0.42
SHMT2-228ENST00000557302 USP42Q9H9J4 1324 aaKnown RBP17.67■□□□□ 0.42
SHMT2-228ENST00000557302 ZPR1O75312 459 aa17.66■□□□□ 0.42
SHMT2-228ENST00000557302 NLGN1Q8N2Q7 840 aa17.66■□□□□ 0.42
SHMT2-228ENST00000557302 ARXQ96QS3 562 aa17.66■□□□□ 0.42
SHMT2-228ENST00000557302 SRP68Q9UHB9 627 aaKnown RBP17.66■□□□□ 0.42
SHMT2-228ENST00000557302 GYS1P13807 737 aa17.65■□□□□ 0.42
SHMT2-228ENST00000557302 PIP4K2AP48426 406 aaPredicted RBP17.65■□□□□ 0.42
SHMT2-228ENST00000557302 KRT24Q2M2I5 525 aa17.65■□□□□ 0.42
SHMT2-228ENST00000557302 WDR63Q8IWG1 891 aa17.65■□□□□ 0.42
SHMT2-228ENST00000557302 NARFQ9UHQ1 456 aa17.65■□□□□ 0.42
SHMT2-228ENST00000557302 LAMB4A4D0S4 1761 aa17.65■□□□□ 0.42
SHMT2-228ENST00000557302 C4AP0C0L4 1744 aa17.64■□□□□ 0.41
SHMT2-228ENST00000557302 NBPF26B4DH59 902 aa17.64■□□□□ 0.41
SHMT2-228ENST00000557302 EIF2S2P20042 333 aaKnown RBP17.64■□□□□ 0.41
SHMT2-228ENST00000557302 NBPF10Q6P3W6 841 aaKnown RBP17.64■□□□□ 0.41
SHMT2-228ENST00000557302 NBPF15Q8N660 670 aa17.64■□□□□ 0.41
SHMT2-228ENST00000557302 COL24A1Q17RW2 1714 aa17.64■□□□□ 0.41
SHMT2-228ENST00000557302 HOXB7P09629 217 aa17.63■□□□□ 0.41
SHMT2-228ENST00000557302 USPL1Q5W0Q7 1092 aa17.63■□□□□ 0.41
SHMT2-228ENST00000557302 ERBB4Q15303 1308 aa17.63■□□□□ 0.41
SHMT2-228ENST00000557302 FKBP8Q14318 412 aa17.62■□□□□ 0.41
SHMT2-228ENST00000557302 DUSP27Q5VZP5 1158 aa17.62■□□□□ 0.41
SHMT2-228ENST00000557302 TSR2Q969E8 191 aaKnown RBP17.62■□□□□ 0.41
SHMT2-228ENST00000557302 TBC1D2BQ9UPU7 963 aa17.62■□□□□ 0.41
SHMT2-228ENST00000557302 MMP10P09238 476 aa17.61■□□□□ 0.41
SHMT2-228ENST00000557302 DZIP3Q86Y13 1208 aaKnown RBP17.61■□□□□ 0.41
SHMT2-228ENST00000557302 HDGFL1Q5TGJ6 251 aa17.6■□□□□ 0.41
SHMT2-228ENST00000557302 NECTIN2Q92692 538 aa17.6■□□□□ 0.41
SHMT2-228ENST00000557302 ZNF521Q96K83 1311 aa17.59■□□□□ 0.41
SHMT2-228ENST00000557302 MYL6BP14649 208 aa17.59■□□□□ 0.41
SHMT2-228ENST00000557302 KLHL34Q8N239 644 aa17.59■□□□□ 0.41
SHMT2-228ENST00000557302 C8orf58Q8NAV2 365 aa17.59■□□□□ 0.41
SHMT2-228ENST00000557302 FHDC1Q9C0D6 1143 aaPredicted RBP17.59■□□□□ 0.41
SHMT2-228ENST00000557302 BCL2L12Q9HB09 334 aa17.59■□□□□ 0.41
SHMT2-228ENST00000557302 FANCIQ9NVI1 1328 aa17.58■□□□□ 0.4
SHMT2-228ENST00000557302 ELL2O00472 640 aaPredicted RBP17.58■□□□□ 0.4
SHMT2-228ENST00000557302 CAMTA2O94983 1202 aa17.58■□□□□ 0.4
SHMT2-228ENST00000557302 MYH16Q9H6N6 1097 aa17.58■□□□□ 0.4
SHMT2-228ENST00000557302 PARP3Q9Y6F1 533 aa17.58■□□□□ 0.4
SHMT2-228ENST00000557302 PDIA6Q15084 440 aa17.57■□□□□ 0.4
SHMT2-228ENST00000557302 SCN7AQ01118 1682 aa17.56■□□□□ 0.4
SHMT2-228ENST00000557302 ANXA1P04083 346 aa17.56■□□□□ 0.4
SHMT2-228ENST00000557302 TM4SF1P30408 202 aa17.56■□□□□ 0.4
SHMT2-228ENST00000557302 GOLGA2Q08379 1002 aa17.56■□□□□ 0.4
SHMT2-228ENST00000557302 NFIXQ14938 502 aa17.56■□□□□ 0.4
SHMT2-228ENST00000557302 PROSER3Q2NL68 480 aa17.56■□□□□ 0.4
SHMT2-228ENST00000557302 KIF6Q6ZMV9 814 aa17.56■□□□□ 0.4
SHMT2-228ENST00000557302 SYT17Q9BSW7 474 aa17.56■□□□□ 0.4
SHMT2-228ENST00000557302 CHMP4AQ9BY43 222 aa17.56■□□□□ 0.4
SHMT2-228ENST00000557302 SPINK5Q9NQ38 1064 aaPredicted RBP17.56■□□□□ 0.4
SHMT2-228ENST00000557302 DDX21Q9NR30 783 aaKnown RBP eCLIP17.56■□□□□ 0.4
SHMT2-228ENST00000557302 CHPF2Q9P2E5 772 aa17.56■□□□□ 0.4
SHMT2-228ENST00000557302 ZNF652Q9Y2D9 606 aa17.56■□□□□ 0.4
SHMT2-228ENST00000557302 DDR1Q08345 913 aa17.55■□□□□ 0.4
SHMT2-228ENST00000557302 TTLL7Q6ZT98 887 aa17.55■□□□□ 0.4
SHMT2-228ENST00000557302 TSPYL6Q8N831 410 aa17.55■□□□□ 0.4
SHMT2-228ENST00000557302 DBF4Q9UBU7 674 aaPredicted RBP17.55■□□□□ 0.4
SHMT2-228ENST00000557302 POLRMTO00411 1230 aaKnown RBP17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms