RNA–Protein interactions for RNA: ENST00000556712.5

SNX6-208, Transcript of sorting nexin 6, humanhuman

TSL 5

Gene SNX6, Length 851 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-208ENST00000556712 COL15A1P39059 1388 aa13.71□□□□□ -0.21
SNX6-208ENST00000556712 USP42Q9H9J4 1324 aaKnown RBP13.71□□□□□ -0.21
SNX6-208ENST00000556712 PRAMEF22A3QJZ6 481 aa13.71□□□□□ -0.21
SNX6-208ENST00000556712 GYS1P13807 737 aa13.71□□□□□ -0.21
SNX6-208ENST00000556712 RFC4P35249 363 aa13.71□□□□□ -0.21
SNX6-208ENST00000556712 VSIG10Q8N0Z9 540 aa13.71□□□□□ -0.21
SNX6-208ENST00000556712 FMNL2Q96PY5 1086 aa13.71□□□□□ -0.21
SNX6-208ENST00000556712 ADAMTS8Q9UP79 889 aa13.71□□□□□ -0.21
SNX6-208ENST00000556712 KIAA1551Q9HCM1 1747 aa13.7□□□□□ -0.22
SNX6-208ENST00000556712 KIF13BQ9NQT8 1826 aa13.7□□□□□ -0.22
SNX6-208ENST00000556712 CANXP27824 592 aaKnown RBP13.7□□□□□ -0.22
SNX6-208ENST00000556712 TMPOP42166 694 aaKnown RBP13.7□□□□□ -0.22
SNX6-208ENST00000556712 RIPK4P57078 832 aa13.7□□□□□ -0.22
SNX6-208ENST00000556712 BCORQ6W2J9 1755 aa13.7□□□□□ -0.22
SNX6-208ENST00000556712 MMP10P09238 476 aa13.69□□□□□ -0.22
SNX6-208ENST00000556712 TAF7Q15545 349 aaPredicted RBP13.69□□□□□ -0.22
SNX6-208ENST00000556712 NEUROD2Q15784 382 aa13.69□□□□□ -0.22
SNX6-208ENST00000556712 N4BP2Q86UW6 1770 aaPredicted RBP13.68□□□□□ -0.22
SNX6-208ENST00000556712 PIP4K2AP48426 406 aaPredicted RBP13.68□□□□□ -0.22
SNX6-208ENST00000556712 RUNDC1Q96C34 613 aa13.68□□□□□ -0.22
SNX6-208ENST00000556712 ZNF330Q9Y3S2 320 aaPredicted RBP13.68□□□□□ -0.22
SNX6-208ENST00000556712 AFDNP55196 1824 aaKnown RBP13.67□□□□□ -0.22
SNX6-208ENST00000556712 ANP32CO43423 234 aa13.67□□□□□ -0.22
SNX6-208ENST00000556712 STARD3NLO95772 234 aa13.67□□□□□ -0.22
SNX6-208ENST00000556712 FKBP8Q14318 412 aa13.67□□□□□ -0.22
SNX6-208ENST00000556712 USPL1Q5W0Q7 1092 aa13.67□□□□□ -0.22
SNX6-208ENST00000556712 USP16Q9Y5T5 823 aa13.67□□□□□ -0.22
SNX6-208ENST00000556712 C10orf71Q711Q0 1435 aa13.66□□□□□ -0.22
SNX6-208ENST00000556712 A1BGP04217 495 aa13.66□□□□□ -0.22
SNX6-208ENST00000556712 PELP1Q8IZL8 1130 aaKnown RBP13.66□□□□□ -0.22
SNX6-208ENST00000556712 NLGN1Q8N2Q7 840 aa13.66□□□□□ -0.22
SNX6-208ENST00000556712 SENP3-EIF4A1A0A087X0R7 540 aa13.65□□□□□ -0.22
SNX6-208ENST00000556712 ZPR1O75312 459 aa13.65□□□□□ -0.22
SNX6-208ENST00000556712 SNRPA1P09661 255 aaKnown RBP13.65□□□□□ -0.22
SNX6-208ENST00000556712 DDR1Q08345 913 aa13.65□□□□□ -0.22
SNX6-208ENST00000556712 TEX13AQ9BXU3 409 aaPredicted RBP13.65□□□□□ -0.22
SNX6-208ENST00000556712 WWC3Q9ULE0 1092 aa13.65□□□□□ -0.22
SNX6-208ENST00000556712 TRIM35Q9UPQ4 493 aa13.65□□□□□ -0.22
SNX6-208ENST00000556712 NRXN2Q9P2S2 1712 aa13.64□□□□□ -0.23
SNX6-208ENST00000556712 EIF5P55010 431 aaKnown RBP13.64□□□□□ -0.23
SNX6-208ENST00000556712 LMOD3Q0VAK6 560 aa13.64□□□□□ -0.23
SNX6-208ENST00000556712 PNISRQ8TF01 805 aaKnown RBP13.64□□□□□ -0.23
SNX6-208ENST00000556712 BCL2L12Q9HB09 334 aa13.64□□□□□ -0.23
SNX6-208ENST00000556712 NARFQ9UHQ1 456 aa13.64□□□□□ -0.23
SNX6-208ENST00000556712 TSPYL4Q9UJ04 414 aa13.64□□□□□ -0.23
SNX6-208ENST00000556712 CD2APQ9Y5K6 639 aa13.64□□□□□ -0.23
SNX6-208ENST00000556712 PXDNLA1KZ92 1463 aa13.63□□□□□ -0.23
SNX6-208ENST00000556712 DCAF8L1A6NGE4 600 aa13.63□□□□□ -0.23
SNX6-208ENST00000556712 EIF4A1P60842 406 aaKnown RBP13.63□□□□□ -0.23
SNX6-208ENST00000556712 MRS2Q9HD23 443 aa13.63□□□□□ -0.23
SNX6-208ENST00000556712 PARP3Q9Y6F1 533 aa13.63□□□□□ -0.23
SNX6-208ENST00000556712 BRCA1P38398 1863 aaKnown RBP13.63□□□□□ -0.23
SNX6-208ENST00000556712 NBPF26B4DH59 902 aa13.62□□□□□ -0.23
SNX6-208ENST00000556712 APAF1O14727 1248 aa13.62□□□□□ -0.23
SNX6-208ENST00000556712 IL6STP40189 918 aaPredicted RBP13.62□□□□□ -0.23
SNX6-208ENST00000556712 GPR162Q16538 588 aa13.62□□□□□ -0.23
SNX6-208ENST00000556712 NBPF10Q6P3W6 841 aaKnown RBP13.62□□□□□ -0.23
SNX6-208ENST00000556712 NBPF15Q8N660 670 aa13.62□□□□□ -0.23
SNX6-208ENST00000556712 TBC1D2BQ9UPU7 963 aa13.62□□□□□ -0.23
SNX6-208ENST00000556712 CHD4Q14839 1912 aa13.62□□□□□ -0.23
SNX6-208ENST00000556712 POLRMTO00411 1230 aaKnown RBP13.61□□□□□ -0.23
SNX6-208ENST00000556712 GIGYF1O75420 1035 aaPredicted RBP13.61□□□□□ -0.23
SNX6-208ENST00000556712 YBX3P16989 372 aaKnown RBP eCLIP13.61□□□□□ -0.235e-10■■□□□ 13
SNX6-208ENST00000556712 NFIXQ14938 502 aa13.61□□□□□ -0.23
SNX6-208ENST00000556712 BICDL1Q6ZP65 573 aa13.61□□□□□ -0.23
SNX6-208ENST00000556712 LAS1LQ9Y4W2 734 aaKnown RBP13.61□□□□□ -0.23
SNX6-208ENST00000556712 A0A087WZG4 1122 aa13.6□□□□□ -0.23
SNX6-208ENST00000556712 ANKRD31Q8N7Z5 1873 aa13.6□□□□□ -0.23
SNX6-208ENST00000556712 CARMIL3Q8ND23 1372 aa13.59□□□□□ -0.23
SNX6-208ENST00000556712 CAMTA2O94983 1202 aa13.59□□□□□ -0.23
SNX6-208ENST00000556712 TM4SF1P30408 202 aa13.59□□□□□ -0.23
SNX6-208ENST00000556712 KRT24Q2M2I5 525 aa13.59□□□□□ -0.23
SNX6-208ENST00000556712 TBC1D9BQ66K14 1250 aa13.59□□□□□ -0.23
SNX6-208ENST00000556712 DZIP3Q86Y13 1208 aaKnown RBP13.59□□□□□ -0.23
SNX6-208ENST00000556712 COL11A2P13942 1736 aaPredicted RBP13.59□□□□□ -0.23
SNX6-208ENST00000556712 UTRNP46939 3433 aa13.58□□□□□ -0.23
SNX6-208ENST00000556712 DLEC1Q9Y238 1755 aa13.58□□□□□ -0.23
SNX6-208ENST00000556712 NPM2Q86SE8 214 aaKnown RBP13.58□□□□□ -0.24
SNX6-208ENST00000556712 NGEFQ8N5V2 710 aa13.58□□□□□ -0.24
SNX6-208ENST00000556712 NUP98P52948 1817 aa13.57□□□□□ -0.24
SNX6-208ENST00000556712 GOLGB1Q14789 3259 aaKnown RBP13.57□□□□□ -0.24
SNX6-208ENST00000556712 A0A0G2JLW4 131 aa13.57□□□□□ -0.24
SNX6-208ENST00000556712 MYL6BP14649 208 aa13.57□□□□□ -0.24
SNX6-208ENST00000556712 CHL1O00533 1208 aa13.56□□□□□ -0.24
SNX6-208ENST00000556712 SERPINB2P05120 415 aa13.56□□□□□ -0.24
SNX6-208ENST00000556712 DPEP1P16444 411 aa13.56□□□□□ -0.24
SNX6-208ENST00000556712 EIF2S2P20042 333 aaKnown RBP13.56□□□□□ -0.24
SNX6-208ENST00000556712 YY1P25490 414 aa13.56□□□□□ -0.24
SNX6-208ENST00000556712 NECTIN2Q92692 538 aa13.56□□□□□ -0.24
SNX6-208ENST00000556712 BABAM1Q9NWV8 329 aa13.56□□□□□ -0.24
SNX6-208ENST00000556712 ARFGEF1Q9Y6D6 1849 aa13.55□□□□□ -0.24
SNX6-208ENST00000556712 CACNA1SQ13698 1873 aa13.55□□□□□ -0.24
SNX6-208ENST00000556712 ANXA1P04083 346 aa13.55□□□□□ -0.24
SNX6-208ENST00000556712 CCDC24Q8N4L8 307 aa13.55□□□□□ -0.24
SNX6-208ENST00000556712 MBIPQ9NS73 344 aa13.55□□□□□ -0.24
SNX6-208ENST00000556712 ANKRD36CQ5JPF3 1778 aa13.54□□□□□ -0.24
SNX6-208ENST00000556712 CHRNA5P30532 468 aa13.54□□□□□ -0.24
SNX6-208ENST00000556712 TGFB2P61812 414 aa13.54□□□□□ -0.24
SNX6-208ENST00000556712 HLFQ16534 295 aa13.54□□□□□ -0.24
SNX6-208ENST00000556712 PROSER3Q2NL68 480 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms