RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 CABP1Q9NZU7 370 aa8.94□□□□□ -0.98
SCFD1-221ENST00000556534 A0A1B0GTH6 734 aa8.93□□□□□ -0.98
SCFD1-221ENST00000556534 PPFIA3O75145 1194 aa8.93□□□□□ -0.98
SCFD1-221ENST00000556534 CSB-PGBD3P0DP91 1061 aa8.93□□□□□ -0.98
SCFD1-221ENST00000556534 ATP4AP20648 1035 aa8.93□□□□□ -0.98
SCFD1-221ENST00000556534 OCLNQ16625 522 aa8.93□□□□□ -0.98
SCFD1-221ENST00000556534 RETREG2Q8NC44 543 aa8.93□□□□□ -0.98
SCFD1-221ENST00000556534 NXF1Q9UBU9 619 aaKnown RBP8.93□□□□□ -0.98
SCFD1-221ENST00000556534 PARP3Q9Y6F1 533 aa8.93□□□□□ -0.98
SCFD1-221ENST00000556534 ATAD2Q6PL18 1390 aa8.92□□□□□ -0.98
SCFD1-221ENST00000556534 PPP1R12BO60237 982 aaPredicted RBP8.92□□□□□ -0.98
SCFD1-221ENST00000556534 HIRAP54198 1017 aaPredicted RBP8.92□□□□□ -0.98
SCFD1-221ENST00000556534 STAG2Q8N3U4 1231 aa8.92□□□□□ -0.98
SCFD1-221ENST00000556534 GAS2L2Q8NHY3 880 aa8.92□□□□□ -0.98
SCFD1-221ENST00000556534 L3MBTL2Q969R5 705 aa8.92□□□□□ -0.98
SCFD1-221ENST00000556534 USTQ9Y2C2 406 aa8.92□□□□□ -0.98
SCFD1-221ENST00000556534 CARNS1A5YM72 827 aa8.91□□□□□ -0.98
SCFD1-221ENST00000556534 H3BM21 787 aa8.91□□□□□ -0.98
SCFD1-221ENST00000556534 PRMT3O60678 531 aa8.91□□□□□ -0.98
SCFD1-221ENST00000556534 ITGA6P23229 1130 aa8.91□□□□□ -0.98
SCFD1-221ENST00000556534 NOS2P35228 1153 aa8.91□□□□□ -0.98
SCFD1-221ENST00000556534 VEGFBP49765 207 aa8.91□□□□□ -0.98
SCFD1-221ENST00000556534 C2orf49Q9BVC5 232 aaPredicted RBP8.91□□□□□ -0.98
SCFD1-221ENST00000556534 CUEDC1Q9NWM3 386 aaPredicted RBP8.91□□□□□ -0.98
SCFD1-221ENST00000556534 ZDHHC3Q9NYG2 299 aa8.91□□□□□ -0.98
SCFD1-221ENST00000556534 SERTM1A2A2V5 107 aa8.9□□□□□ -0.98
SCFD1-221ENST00000556534 TERTO14746 1132 aaKnown RBP8.9□□□□□ -0.98
SCFD1-221ENST00000556534 MSX1P28360 303 aa8.9□□□□□ -0.98
SCFD1-221ENST00000556534 TXLNAP40222 546 aa8.9□□□□□ -0.98
SCFD1-221ENST00000556534 NPAS3Q8IXF0 933 aa8.9□□□□□ -0.98
SCFD1-221ENST00000556534 PRIMPOLQ96LW4 560 aa8.9□□□□□ -0.98
SCFD1-221ENST00000556534 GPAMQ9HCL2 828 aa8.9□□□□□ -0.98
SCFD1-221ENST00000556534 CXXC1Q9P0U4 656 aaPredicted RBP8.9□□□□□ -0.98
SCFD1-221ENST00000556534 FOXO3O43524 673 aa8.89□□□□□ -0.99
SCFD1-221ENST00000556534 F11P03951 625 aa8.89□□□□□ -0.99
SCFD1-221ENST00000556534 FKBP5Q13451 457 aaPredicted RBP8.89□□□□□ -0.99
SCFD1-221ENST00000556534 NBPF1Q3BBV0 1214 aa8.89□□□□□ -0.99
SCFD1-221ENST00000556534 GAS2L1Q99501 681 aaPredicted RBP8.89□□□□□ -0.99
SCFD1-221ENST00000556534 ZNF232Q9UNY5 417 aa8.89□□□□□ -0.99
SCFD1-221ENST00000556534 THBS1P07996 1170 aa8.88□□□□□ -0.99
SCFD1-221ENST00000556534 NFX1Q12986 1120 aaKnown RBP8.88□□□□□ -0.99
SCFD1-221ENST00000556534 C1orf216Q8TAB5 229 aa8.88□□□□□ -0.99
SCFD1-221ENST00000556534 CHMP7Q8WUX9 453 aaPredicted RBP8.88□□□□□ -0.99
SCFD1-221ENST00000556534 ZNF775Q96BV0 537 aaPredicted RBP8.88□□□□□ -0.99
SCFD1-221ENST00000556534 CHMP3Q9Y3E7 222 aa8.88□□□□□ -0.99
SCFD1-221ENST00000556534 VSIG8P0DPA2 414 aa8.87□□□□□ -0.99
SCFD1-221ENST00000556534 ATP2B4P23634 1241 aa8.87□□□□□ -0.99
SCFD1-221ENST00000556534 LCE2CQ5TA81 110 aa8.87□□□□□ -0.99
SCFD1-221ENST00000556534 AIDAQ96BJ3 306 aa8.87□□□□□ -0.99
SCFD1-221ENST00000556534 ZNF837Q96EG3 531 aaPredicted RBP8.87□□□□□ -0.99
SCFD1-221ENST00000556534 CRISPLD1Q9H336 500 aa8.87□□□□□ -0.99
SCFD1-221ENST00000556534 RUBCNLQ9H714 662 aa8.87□□□□□ -0.99
SCFD1-221ENST00000556534 RIPOR1Q6ZS17 1223 aa8.86□□□□□ -0.99
SCFD1-221ENST00000556534 TRIM22Q8IYM9 498 aa8.86□□□□□ -0.99
SCFD1-221ENST00000556534 NANOS1Q8WY41 292 aaKnown RBP8.86□□□□□ -0.99
SCFD1-221ENST00000556534 PHACTR1Q9C0D0 580 aa8.86□□□□□ -0.99
SCFD1-221ENST00000556534 ERBB4Q15303 1308 aa8.85□□□□□ -0.99
SCFD1-221ENST00000556534 TATP17735 454 aaPredicted RBP8.85□□□□□ -0.99
SCFD1-221ENST00000556534 DBN1Q16643 649 aa8.85□□□□□ -0.99
SCFD1-221ENST00000556534 C1orf53Q5VUE5 145 aa8.85□□□□□ -0.99
SCFD1-221ENST00000556534 C7orf43Q8WVR3 580 aa8.85□□□□□ -0.99
SCFD1-221ENST00000556534 KLRG1Q96E93 195 aa8.85□□□□□ -0.99
SCFD1-221ENST00000556534 HCN4Q9Y3Q4 1203 aa8.85□□□□□ -0.99
SCFD1-221ENST00000556534 UBAP2LQ14157 1087 aaKnown RBP8.84□□□□□ -0.99
SCFD1-221ENST00000556534 ALDH16A1Q8IZ83 802 aa8.84□□□□□ -0.99
SCFD1-221ENST00000556534 NUCKS1Q9H1E3 243 aaKnown RBP8.84□□□□□ -0.99
SCFD1-221ENST00000556534 SSFA2P28290 1259 aa8.83□□□□□ -1
SCFD1-221ENST00000556534 LBRQ14739 615 aaKnown RBP8.83□□□□□ -1
SCFD1-221ENST00000556534 PHLDB3Q6NSJ2 640 aa8.83□□□□□ -1
SCFD1-221ENST00000556534 GMCL1Q96IK5 515 aa8.83□□□□□ -1
SCFD1-221ENST00000556534 ZIC5Q96T25 663 aa8.83□□□□□ -1
SCFD1-221ENST00000556534 QTRT2Q9H974 415 aaKnown RBP8.83□□□□□ -1
SCFD1-221ENST00000556534 GPC6Q9Y625 555 aaPredicted RBP8.83□□□□□ -1
SCFD1-221ENST00000556534 CDC14CA4D256 554 aa8.82□□□□□ -1
SCFD1-221ENST00000556534 H7C1W4 665 aa8.82□□□□□ -1
SCFD1-221ENST00000556534 LCE2AQ5TA79 106 aaPredicted RBP8.82□□□□□ -1
SCFD1-221ENST00000556534 PGBD3Q8N328 593 aa8.82□□□□□ -1
SCFD1-221ENST00000556534 VWA5B2Q8N398 1253 aa8.82□□□□□ -1
SCFD1-221ENST00000556534 RHPN1Q8TCX5 695 aa8.82□□□□□ -1
SCFD1-221ENST00000556534 SLC16A10Q8TF71 515 aa8.82□□□□□ -1
SCFD1-221ENST00000556534 COL26A1Q96A83 441 aa8.82□□□□□ -1
SCFD1-221ENST00000556534 NGLY1Q96IV0 654 aa8.82□□□□□ -1
SCFD1-221ENST00000556534 MKNK1Q9BUB5 465 aa8.82□□□□□ -1
SCFD1-221ENST00000556534 A0A1W2PNR3 127 aa8.81□□□□□ -1
SCFD1-221ENST00000556534 RTN1Q16799 776 aa8.81□□□□□ -1
SCFD1-221ENST00000556534 ARSJQ5FYB0 599 aaPredicted RBP8.81□□□□□ -1
SCFD1-221ENST00000556534 CAPN12Q6ZSI9 719 aa8.81□□□□□ -1
SCFD1-221ENST00000556534 VTI1AQ96AJ9 217 aa8.81□□□□□ -1
SCFD1-221ENST00000556534 WFS1O76024 890 aa8.8□□□□□ -1
SCFD1-221ENST00000556534 SCNN1AP37088 669 aa8.8□□□□□ -1
SCFD1-221ENST00000556534 EFHC2Q5JST6 749 aa8.8□□□□□ -1
SCFD1-221ENST00000556534 BICDL1Q6ZP65 573 aa8.8□□□□□ -1
SCFD1-221ENST00000556534 SV2AQ7L0J3 742 aa8.8□□□□□ -1
SCFD1-221ENST00000556534 NLRP8Q86W28 1048 aa8.8□□□□□ -1
SCFD1-221ENST00000556534 GPR161Q8N6U8 529 aaKnown RBP8.8□□□□□ -1
SCFD1-221ENST00000556534 IRF7Q92985 503 aa8.8□□□□□ -1
SCFD1-221ENST00000556534 GTPBP3Q969Y2 492 aaKnown RBP8.8□□□□□ -1
SCFD1-221ENST00000556534 MYO19Q96H55 970 aa8.8□□□□□ -1
SCFD1-221ENST00000556534 HSH2DQ96JZ2 352 aa8.8□□□□□ -1
SCFD1-221ENST00000556534 TREML4Q6UXN2 200 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms