RNA–Protein interactions for RNA: ENST00000550208.1

BRF1-216, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 3

Gene BRF1, Length 1,040 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-216ENST00000550208 WWC1Q8IX03 1113 aa29.44■■■□□ 2.3
BRF1-216ENST00000550208 CICQ96RK0 1608 aaPredicted RBP29.44■■■□□ 2.3
BRF1-216ENST00000550208 KDM3BQ7LBC6 1761 aa29.44■■■□□ 2.3
BRF1-216ENST00000550208 QSER1Q2KHR3 1735 aa29.43■■■□□ 2.3
BRF1-216ENST00000550208 SSFA2P28290 1259 aa29.43■■■□□ 2.3
BRF1-216ENST00000550208 CFAP44Q96MT7 982 aa29.43■■■□□ 2.3
BRF1-216ENST00000550208 ATF5Q9Y2D1 282 aaPredicted RBP29.43■■■□□ 2.3
BRF1-216ENST00000550208 UBR3Q6ZT12 1888 aa29.42■■■□□ 2.3
BRF1-216ENST00000550208 ZNF853P0CG23 659 aa29.42■■■□□ 2.3
BRF1-216ENST00000550208 TRAPPC3LQ5T215 181 aa29.42■■■□□ 2.3
BRF1-216ENST00000550208 CALD1Q05682 793 aaKnown RBP29.41■■■□□ 2.3
BRF1-216ENST00000550208 ZBTB1Q9Y2K1 713 aa29.41■■■□□ 2.3
BRF1-216ENST00000550208 GIGYF1O75420 1035 aaPredicted RBP29.4■■■□□ 2.3
BRF1-216ENST00000550208 A1BGP04217 495 aa29.4■■■□□ 2.3
BRF1-216ENST00000550208 CANXP27824 592 aaKnown RBP29.4■■■□□ 2.3
BRF1-216ENST00000550208 SLC16A10Q8TF71 515 aa29.4■■■□□ 2.3
BRF1-216ENST00000550208 ARHGEF1Q92888 912 aaKnown RBP29.4■■■□□ 2.3
BRF1-216ENST00000550208 SPON1Q9HCB6 807 aa29.39■■■□□ 2.3
BRF1-216ENST00000550208 IFT57Q9NWB7 429 aa29.39■■■□□ 2.3
BRF1-216ENST00000550208 GNAI1P63096 354 aa29.38■■■□□ 2.29
BRF1-216ENST00000550208 MTFR1LQ9H019 292 aa29.38■■■□□ 2.29
BRF1-216ENST00000550208 MBIPQ9NS73 344 aa29.38■■■□□ 2.29
BRF1-216ENST00000550208 ADRA2BP18089 450 aa29.36■■■□□ 2.29
BRF1-216ENST00000550208 SOS1Q07889 1333 aaPredicted RBP29.36■■■□□ 2.29
BRF1-216ENST00000550208 KRT24Q2M2I5 525 aa29.35■■■□□ 2.29
BRF1-216ENST00000550208 RFC4P35249 363 aa29.34■■■□□ 2.29
BRF1-216ENST00000550208 PIP4K2AP48426 406 aaPredicted RBP29.34■■■□□ 2.29
BRF1-216ENST00000550208 NGEFQ8N5V2 710 aa29.34■■■□□ 2.29
BRF1-216ENST00000550208 WDR63Q8IWG1 891 aa29.33■■■□□ 2.29
BRF1-216ENST00000550208 PTGER2P43116 358 aa29.32■■■□□ 2.28
BRF1-216ENST00000550208 EIF5P55010 431 aaKnown RBP29.32■■■□□ 2.28
BRF1-216ENST00000550208 MSL1Q68DK7 614 aa29.32■■■□□ 2.28
BRF1-216ENST00000550208 IL16Q14005 1332 aa29.3■■■□□ 2.28
BRF1-216ENST00000550208 NBPF26B4DH59 902 aa29.3■■■□□ 2.28
BRF1-216ENST00000550208 NBPF10Q6P3W6 841 aaKnown RBP29.3■■■□□ 2.28
BRF1-216ENST00000550208 NBPF15Q8N660 670 aa29.3■■■□□ 2.28
BRF1-216ENST00000550208 SGIP1Q9BQI5 828 aa29.3■■■□□ 2.28
BRF1-216ENST00000550208 SRP68Q9UHB9 627 aaKnown RBP29.3■■■□□ 2.28
BRF1-216ENST00000550208 EIF2S2P20042 333 aaKnown RBP29.29■■■□□ 2.28
BRF1-216ENST00000550208 IL6STP40189 918 aaPredicted RBP29.29■■■□□ 2.28
BRF1-216ENST00000550208 TSR2Q969E8 191 aaKnown RBP29.29■■■□□ 2.28
BRF1-216ENST00000550208 ZNF330Q9Y3S2 320 aaPredicted RBP29.29■■■□□ 2.28
BRF1-216ENST00000550208 COL15A1P39059 1388 aa29.27■■■□□ 2.28
BRF1-216ENST00000550208 DUSP27Q5VZP5 1158 aa29.26■■■□□ 2.27
BRF1-216ENST00000550208 SPINK5Q9NQ38 1064 aaPredicted RBP29.26■■■□□ 2.27
BRF1-216ENST00000550208 A0A087WZG4 1122 aa29.25■■■□□ 2.27
BRF1-216ENST00000550208 GYS1P13807 737 aa29.25■■■□□ 2.27
BRF1-216ENST00000550208 C8orf58Q8NAV2 365 aa29.25■■■□□ 2.27
BRF1-216ENST00000550208 NECTIN2Q92692 538 aa29.25■■■□□ 2.27
BRF1-216ENST00000550208 NARFQ9UHQ1 456 aa29.25■■■□□ 2.27
BRF1-216ENST00000550208 ZNF521Q96K83 1311 aa29.24■■■□□ 2.27
BRF1-216ENST00000550208 USP42Q9H9J4 1324 aaKnown RBP29.24■■■□□ 2.27
BRF1-216ENST00000550208 ELL2O00472 640 aaPredicted RBP29.24■■■□□ 2.27
BRF1-216ENST00000550208 ZPR1O75312 459 aa29.24■■■□□ 2.27
BRF1-216ENST00000550208 USPL1Q5W0Q7 1092 aa29.24■■■□□ 2.27
BRF1-216ENST00000550208 TBC1D2BQ9UPU7 963 aa29.24■■■□□ 2.27
BRF1-216ENST00000550208 LRP5O75197 1615 aa29.23■■■□□ 2.27
BRF1-216ENST00000550208 POLD1P28340 1107 aa29.23■■■□□ 2.27
BRF1-216ENST00000550208 ARXQ96QS3 562 aa29.23■■■□□ 2.27
BRF1-216ENST00000550208 LAMB4A4D0S4 1761 aa29.22■■■□□ 2.27
BRF1-216ENST00000550208 NPM2Q86SE8 214 aaKnown RBP29.22■■■□□ 2.27
BRF1-216ENST00000550208 NLGN1Q8N2Q7 840 aa29.22■■■□□ 2.27
BRF1-216ENST00000550208 C4AP0C0L4 1744 aa29.21■■■□□ 2.27
BRF1-216ENST00000550208 MYL6BP14649 208 aa29.21■■■□□ 2.27
BRF1-216ENST00000550208 FKBP8Q14318 412 aa29.21■■■□□ 2.27
BRF1-216ENST00000550208 PPP1R1BQ9UD71 204 aaPredicted RBP29.21■■■□□ 2.27
BRF1-216ENST00000550208 HOXB7P09629 217 aa29.2■■■□□ 2.26
BRF1-216ENST00000550208 PDIA6Q15084 440 aa29.2■■■□□ 2.26
BRF1-216ENST00000550208 TSPYL6Q8N831 410 aa29.2■■■□□ 2.26
BRF1-216ENST00000550208 BCL2L12Q9HB09 334 aa29.2■■■□□ 2.26
BRF1-216ENST00000550208 COL24A1Q17RW2 1714 aa29.2■■■□□ 2.26
BRF1-216ENST00000550208 ERBB4Q15303 1308 aa29.19■■■□□ 2.26
BRF1-216ENST00000550208 FANCIQ9NVI1 1328 aa29.19■■■□□ 2.26
BRF1-216ENST00000550208 ANXA1P04083 346 aa29.18■■■□□ 2.26
BRF1-216ENST00000550208 PROSER3Q2NL68 480 aa29.18■■■□□ 2.26
BRF1-216ENST00000550208 HDGFL1Q5TGJ6 251 aa29.18■■■□□ 2.26
BRF1-216ENST00000550208 DZIP3Q86Y13 1208 aaKnown RBP29.18■■■□□ 2.26
BRF1-216ENST00000550208 CAMTA2O94983 1202 aa29.16■■■□□ 2.26
BRF1-216ENST00000550208 MMP10P09238 476 aa29.16■■■□□ 2.26
BRF1-216ENST00000550208 GOLGA2Q08379 1002 aa29.16■■■□□ 2.26
BRF1-216ENST00000550208 MYH16Q9H6N6 1097 aa29.15■■■□□ 2.26
BRF1-216ENST00000550208 EXOSC9Q06265 439 aaKnown RBP29.14■■■□□ 2.26
BRF1-216ENST00000550208 LRP10Q7Z4F1 713 aa29.14■■■□□ 2.26
BRF1-216ENST00000550208 DDX21Q9NR30 783 aaKnown RBP eCLIP29.14■■■□□ 2.26
BRF1-216ENST00000550208 TM4SF1P30408 202 aa29.13■■■□□ 2.25
BRF1-216ENST00000550208 TTLL7Q6ZT98 887 aa29.13■■■□□ 2.25
BRF1-216ENST00000550208 CHPF2Q9P2E5 772 aa29.13■■■□□ 2.25
BRF1-216ENST00000550208 TWISTNBQ3B726 338 aaPredicted RBP29.12■■■□□ 2.25
BRF1-216ENST00000550208 CDCA7LQ96GN5 454 aa29.12■■■□□ 2.25
BRF1-216ENST00000550208 SLFN5Q08AF3 891 aa29.1■■■□□ 2.25
BRF1-216ENST00000550208 NFIXQ14938 502 aa29.1■■■□□ 2.25
BRF1-216ENST00000550208 FHDC1Q9C0D6 1143 aaPredicted RBP29.1■■■□□ 2.25
BRF1-216ENST00000550208 DBF4Q9UBU7 674 aaPredicted RBP29.1■■■□□ 2.25
BRF1-216ENST00000550208 HNRNPUQ00839 825 aaKnown RBP eCLIP29.09■■■□□ 2.25
BRF1-216ENST00000550208 DDR1Q08345 913 aa29.09■■■□□ 2.25
BRF1-216ENST00000550208 TBC1D9BQ66K14 1250 aa29.09■■■□□ 2.25
BRF1-216ENST00000550208 BICDL1Q6ZP65 573 aa29.09■■■□□ 2.25
BRF1-216ENST00000550208 COPS6Q7L5N1 327 aa29.09■■■□□ 2.25
BRF1-216ENST00000550208 PARP3Q9Y6F1 533 aa29.09■■■□□ 2.25
BRF1-216ENST00000550208 E9PSI1 815 aa29.08■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms