RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, human

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF6-205	ENST00000550075	RFC4	P35249	363 aa		34.03	■■■■□ 3.04
CPSF6-205	ENST00000550075	MSL1	Q68DK7	614 aa		34.03	■■■■□ 3.04
CPSF6-205	ENST00000550075	ARX	Q96QS3	562 aa		34.03	■■■■□ 3.04
CPSF6-205	ENST00000550075	SNRPA1	P09661	255 aa	Known RBP	34.01	■■■■□ 3.03
CPSF6-205	ENST00000550075	APAF1	O14727	1248 aa		34	■■■■□ 3.03
CPSF6-205	ENST00000550075	ARHGEF1	Q92888	912 aa	Known RBP	34	■■■■□ 3.03
CPSF6-205	ENST00000550075	BABAM1	Q9NWV8	329 aa		34	■■■■□ 3.03
CPSF6-205	ENST00000550075	MIS18A	Q9NYP9	233 aa		34	■■■■□ 3.03
CPSF6-205	ENST00000550075	ZBTB1	Q9Y2K1	713 aa		34	■■■■□ 3.03
CPSF6-205	ENST00000550075	SOS1	Q07889	1333 aa	Predicted RBP	34	■■■■□ 3.03
CPSF6-205	ENST00000550075	LAMB4	A4D0S4	1761 aa		33.99	■■■■□ 3.03
CPSF6-205	ENST00000550075	TSPYL4	Q9UJ04	414 aa		33.98	■■■■□ 3.03
CPSF6-205	ENST00000550075	TRIM35	Q9UPQ4	493 aa		33.98	■■■■□ 3.03
CPSF6-205	ENST00000550075	COL15A1	P39059	1388 aa		33.98	■■■■□ 3.03
CPSF6-205	ENST00000550075	CANX	P27824	592 aa	Known RBP	33.95	■■■■□ 3.03
CPSF6-205	ENST00000550075	CALD1	Q05682	793 aa	Known RBP	33.94	■■■■□ 3.02
CPSF6-205	ENST00000550075	NPM2	Q86SE8	214 aa	Known RBP	33.94	■■■■□ 3.02
CPSF6-205	ENST00000550075	NLGN1	Q8N2Q7	840 aa		33.94	■■■■□ 3.02
CPSF6-205	ENST00000550075	USP42	Q9H9J4	1324 aa	Known RBP	33.94	■■■■□ 3.02
CPSF6-205	ENST00000550075	EIF4A1	P60842	406 aa	Known RBP	33.92	■■■■□ 3.02
CPSF6-205	ENST00000550075	FHDC1	Q9C0D6	1143 aa	Predicted RBP	33.92	■■■■□ 3.02
CPSF6-205	ENST00000550075		A0A087WZG4	1122 aa		33.91	■■■■□ 3.02
CPSF6-205	ENST00000550075	ZPR1	O75312	459 aa		33.91	■■■■□ 3.02
CPSF6-205	ENST00000550075	GYS1	P13807	737 aa		33.9	■■■■□ 3.02
CPSF6-205	ENST00000550075	IL6ST	P40189	918 aa	Predicted RBP	33.9	■■■■□ 3.02
CPSF6-205	ENST00000550075	USP16	Q9Y5T5	823 aa		33.9	■■■■□ 3.02
CPSF6-205	ENST00000550075	EIF5	P55010	431 aa	Known RBP	33.88	■■■■□ 3.01
CPSF6-205	ENST00000550075	KLHL34	Q8N239	644 aa		33.88	■■■■□ 3.01
CPSF6-205	ENST00000550075	ZNF330	Q9Y3S2	320 aa	Predicted RBP	33.88	■■■■□ 3.01
CPSF6-205	ENST00000550075	PRAMEF22	A3QJZ6	481 aa		33.87	■■■■□ 3.01
CPSF6-205	ENST00000550075	GIGYF1	O75420	1035 aa	Predicted RBP	33.87	■■■■□ 3.01
CPSF6-205	ENST00000550075	A1BG	P04217	495 aa		33.87	■■■■□ 3.01
CPSF6-205	ENST00000550075	SRP68	Q9UHB9	627 aa	Known RBP	33.87	■■■■□ 3.01
CPSF6-205	ENST00000550075	LAS1L	Q9Y4W2	734 aa	Known RBP	33.87	■■■■□ 3.01
CPSF6-205	ENST00000550075	FAM9B	Q8IZU0	186 aa		33.86	■■■■□ 3.01
CPSF6-205	ENST00000550075	NARF	Q9UHQ1	456 aa		33.86	■■■■□ 3.01
CPSF6-205	ENST00000550075	CHL1	O00533	1208 aa		33.85	■■■■□ 3.01
CPSF6-205	ENST00000550075	MMP10	P09238	476 aa		33.85	■■■■□ 3.01
CPSF6-205	ENST00000550075	SYT17	Q9BSW7	474 aa		33.85	■■■■□ 3.01
CPSF6-205	ENST00000550075	CFAP44	Q96MT7	982 aa		33.84	■■■■□ 3.01
CPSF6-205	ENST00000550075	SCN7A	Q01118	1682 aa		33.84	■■■■□ 3.01
CPSF6-205	ENST00000550075	CCDC27	Q2M243	656 aa		33.82	■■■■□ 3
CPSF6-205	ENST00000550075	NCBP3	Q53F19	620 aa	Known RBP	33.82	■■■■□ 3
CPSF6-205	ENST00000550075	USPL1	Q5W0Q7	1092 aa		33.82	■■■■□ 3
CPSF6-205	ENST00000550075	GNAI1	P63096	354 aa		33.81	■■■■□ 3
CPSF6-205	ENST00000550075	IFT57	Q9NWB7	429 aa		33.81	■■■■□ 3
CPSF6-205	ENST00000550075	DCAF8L1	A6NGE4	600 aa		33.8	■■■■□ 3
CPSF6-205	ENST00000550075	PARP3	Q9Y6F1	533 aa		33.8	■■■■□ 3
CPSF6-205	ENST00000550075	FKBP8	Q14318	412 aa		33.79	■■■■□ 3
CPSF6-205	ENST00000550075	CCER2	I3L3R5	266 aa		33.78	■■■■□ 3
CPSF6-205	ENST00000550075	CD2AP	Q9Y5K6	639 aa		33.78	■■■■□ 3
CPSF6-205	ENST00000550075	ERBB4	Q15303	1308 aa		33.78	■■■■□ 3
CPSF6-205	ENST00000550075	BCOR	Q6W2J9	1755 aa		33.77	■■■■□ 3
CPSF6-205	ENST00000550075	PIP4K2A	P48426	406 aa	Predicted RBP	33.76	■■■□□ 2.99
CPSF6-205	ENST00000550075	DIEXF	Q68CQ4	756 aa	Known RBP	33.76	■■■□□ 2.99
CPSF6-205	ENST00000550075	DZIP3	Q86Y13	1208 aa	Known RBP	33.76	■■■□□ 2.99
CPSF6-205	ENST00000550075	NBPF26	B4DH59	902 aa		33.75	■■■□□ 2.99
CPSF6-205	ENST00000550075	NBPF10	Q6P3W6	841 aa	Known RBP	33.75	■■■□□ 2.99
CPSF6-205	ENST00000550075	NBPF15	Q8N660	670 aa		33.75	■■■□□ 2.99
CPSF6-205	ENST00000550075	ZNF853	P0CG23	659 aa		33.74	■■■□□ 2.99
CPSF6-205	ENST00000550075	NGEF	Q8N5V2	710 aa		33.74	■■■□□ 2.99
CPSF6-205	ENST00000550075	MBIP	Q9NS73	344 aa		33.74	■■■□□ 2.99
CPSF6-205	ENST00000550075	TBC1D2B	Q9UPU7	963 aa		33.74	■■■□□ 2.99
CPSF6-205	ENST00000550075	WWC1	Q8IX03	1113 aa		33.73	■■■□□ 2.99
CPSF6-205	ENST00000550075	HOXB7	P09629	217 aa		33.72	■■■□□ 2.99
CPSF6-205	ENST00000550075	BCL2L12	Q9HB09	334 aa		33.71	■■■□□ 2.99
CPSF6-205	ENST00000550075	C10orf71	Q711Q0	1435 aa		33.7	■■■□□ 2.99
CPSF6-205	ENST00000550075	KIF13B	Q9NQT8	1826 aa		33.7	■■■□□ 2.99
CPSF6-205	ENST00000550075	CAMTA2	O94983	1202 aa		33.7	■■■□□ 2.99
CPSF6-205	ENST00000550075	EIF2S2	P20042	333 aa	Known RBP	33.7	■■■□□ 2.99
CPSF6-205	ENST00000550075	ZNF652	Q9Y2D9	606 aa		33.7	■■■□□ 2.99
CPSF6-205	ENST00000550075	IL16	Q14005	1332 aa		33.7	■■■□□ 2.99
CPSF6-205	ENST00000550075	SENP3-EIF4A1	A0A087X0R7	540 aa		33.69	■■■□□ 2.98
CPSF6-205	ENST00000550075	TM4SF1	P30408	202 aa		33.69	■■■□□ 2.98
CPSF6-205	ENST00000550075	DDR1	Q08345	913 aa		33.69	■■■□□ 2.98
CPSF6-205	ENST00000550075	RGL2	O15211	777 aa		33.68	■■■□□ 2.98
CPSF6-205	ENST00000550075	NFIX	Q14938	502 aa		33.68	■■■□□ 2.98
CPSF6-205	ENST00000550075	NLGN2	Q8NFZ4	835 aa		33.68	■■■□□ 2.98
CPSF6-205	ENST00000550075	POLRMT	O00411	1230 aa	Known RBP	33.67	■■■□□ 2.98
CPSF6-205	ENST00000550075	MYL6B	P14649	208 aa		33.66	■■■□□ 2.98
CPSF6-205	ENST00000550075	KRT24	Q2M2I5	525 aa		33.66	■■■□□ 2.98
CPSF6-205	ENST00000550075	CLEC4G	Q6UXB4	293 aa		33.65	■■■□□ 2.98
CPSF6-205	ENST00000550075	KIF6	Q6ZMV9	814 aa		33.65	■■■□□ 2.98
CPSF6-205	ENST00000550075	SALL2	Q9Y467	1007 aa	Predicted RBP	33.65	■■■□□ 2.98
CPSF6-205	ENST00000550075	HDGFL1	Q5TGJ6	251 aa		33.64	■■■□□ 2.98
CPSF6-205	ENST00000550075	CARMIL3	Q8ND23	1372 aa		33.63	■■■□□ 2.97
CPSF6-205	ENST00000550075	AFDN	P55196	1824 aa	Known RBP	33.63	■■■□□ 2.97
CPSF6-205	ENST00000550075	NRXN2	Q9P2S2	1712 aa		33.63	■■■□□ 2.97
CPSF6-205	ENST00000550075	DUSP27	Q5VZP5	1158 aa		33.63	■■■□□ 2.97
CPSF6-205	ENST00000550075	BICDL1	Q6ZP65	573 aa		33.63	■■■□□ 2.97
CPSF6-205	ENST00000550075	WDR63	Q8IWG1	891 aa		33.63	■■■□□ 2.97
CPSF6-205	ENST00000550075	TBC1D9B	Q66K14	1250 aa		33.62	■■■□□ 2.97
CPSF6-205	ENST00000550075	NECTIN2	Q92692	538 aa		33.61	■■■□□ 2.97
CPSF6-205	ENST00000550075	CHMP4A	Q9BY43	222 aa		33.61	■■■□□ 2.97
CPSF6-205	ENST00000550075	SERPINB2	P05120	415 aa		33.6	■■■□□ 2.97
CPSF6-205	ENST00000550075	SETDB2	Q96T68	719 aa		33.6	■■■□□ 2.97
CPSF6-205	ENST00000550075	MAP3K15	Q6ZN16	1313 aa		33.59	■■■□□ 2.97
CPSF6-205	ENST00000550075	TGFB2	P61812	414 aa		33.59	■■■□□ 2.97
CPSF6-205	ENST00000550075	DDX21	Q9NR30	783 aa	Known RBP eCLIP	33.59	■■■□□ 2.97
CPSF6-205	ENST00000550075	ERVV-1	B6SEH8	477 aa		33.58	■■■□□ 2.97

Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms