RNA–Protein interactions for RNA: ENST00000549547.1

PRPF40B-210, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-210ENST00000549547 SNRPA1P09661 255 aaKnown RBP17.03■□□□□ 0.32
PRPF40B-210ENST00000549547 ARXQ96QS3 562 aa17.03■□□□□ 0.32
PRPF40B-210ENST00000549547 THUMPD2Q9BTF0 503 aaKnown RBP17.03■□□□□ 0.32
PRPF40B-210ENST00000549547 KCNQ3O43525 872 aa17.02■□□□□ 0.32
PRPF40B-210ENST00000549547 ARHGEF1Q92888 912 aaKnown RBP17.02■□□□□ 0.32
PRPF40B-210ENST00000549547 SOS1Q07889 1333 aaPredicted RBP17.01■□□□□ 0.31
PRPF40B-210ENST00000549547 APAF1O14727 1248 aa17.01■□□□□ 0.31
PRPF40B-210ENST00000549547 CALD1Q05682 793 aaKnown RBP17.01■□□□□ 0.31
PRPF40B-210ENST00000549547 TRIM35Q9UPQ4 493 aa17.01■□□□□ 0.31
PRPF40B-210ENST00000549547 A0A087WZG4 1122 aa17■□□□□ 0.31
PRPF40B-210ENST00000549547 MSL1Q68DK7 614 aa17■□□□□ 0.31
PRPF40B-210ENST00000549547 NPM2Q86SE8 214 aaKnown RBP17■□□□□ 0.31
PRPF40B-210ENST00000549547 NLGN1Q8N2Q7 840 aa17■□□□□ 0.31
PRPF40B-210ENST00000549547 MIS18AQ9NYP9 233 aa17■□□□□ 0.31
PRPF40B-210ENST00000549547 TSPYL4Q9UJ04 414 aa17■□□□□ 0.31
PRPF40B-210ENST00000549547 ZBTB1Q9Y2K1 713 aa17■□□□□ 0.31
PRPF40B-210ENST00000549547 COL15A1P39059 1388 aa17■□□□□ 0.31
PRPF40B-210ENST00000549547 SMIM5Q71RC9 77 aa16.99■□□□□ 0.31
PRPF40B-210ENST00000549547 USP42Q9H9J4 1324 aaKnown RBP16.98■□□□□ 0.31
PRPF40B-210ENST00000549547 ZPR1O75312 459 aa16.98■□□□□ 0.31
PRPF40B-210ENST00000549547 CANXP27824 592 aaKnown RBP16.98■□□□□ 0.31
PRPF40B-210ENST00000549547 IL6STP40189 918 aaPredicted RBP16.98■□□□□ 0.31
PRPF40B-210ENST00000549547 EIF4A1P60842 406 aaKnown RBP16.97■□□□□ 0.31
PRPF40B-210ENST00000549547 NCBP3Q53F19 620 aaKnown RBP16.97■□□□□ 0.31
PRPF40B-210ENST00000549547 GYS1P13807 737 aa16.96■□□□□ 0.31
PRPF40B-210ENST00000549547 EIF5P55010 431 aaKnown RBP16.96■□□□□ 0.31
PRPF40B-210ENST00000549547 FHDC1Q9C0D6 1143 aaPredicted RBP16.96■□□□□ 0.31
PRPF40B-210ENST00000549547 NARFQ9UHQ1 456 aa16.96■□□□□ 0.31
PRPF40B-210ENST00000549547 USP16Q9Y5T5 823 aa16.96■□□□□ 0.31
PRPF40B-210ENST00000549547 CHL1O00533 1208 aa16.95■□□□□ 0.3
PRPF40B-210ENST00000549547 GIGYF1O75420 1035 aaPredicted RBP16.95■□□□□ 0.3
PRPF40B-210ENST00000549547 CCDC27Q2M243 656 aa16.95■□□□□ 0.3
PRPF40B-210ENST00000549547 SCN7AQ01118 1682 aa16.94■□□□□ 0.3
PRPF40B-210ENST00000549547 DCAF8L1A6NGE4 600 aa16.94■□□□□ 0.3
PRPF40B-210ENST00000549547 A1BGP04217 495 aa16.94■□□□□ 0.3
PRPF40B-210ENST00000549547 GNAI1P63096 354 aa16.94■□□□□ 0.3
PRPF40B-210ENST00000549547 FAM9BQ8IZU0 186 aa16.94■□□□□ 0.3
PRPF40B-210ENST00000549547 CFAP44Q96MT7 982 aa16.94■□□□□ 0.3
PRPF40B-210ENST00000549547 SYT17Q9BSW7 474 aa16.94■□□□□ 0.3
PRPF40B-210ENST00000549547 LAS1LQ9Y4W2 734 aaKnown RBP16.94■□□□□ 0.3
PRPF40B-210ENST00000549547 PRAMEF22A3QJZ6 481 aa16.93■□□□□ 0.3
PRPF40B-210ENST00000549547 CCER2I3L3R5 266 aa16.93■□□□□ 0.3
PRPF40B-210ENST00000549547 MMP10P09238 476 aa16.93■□□□□ 0.3
PRPF40B-210ENST00000549547 KLHL34Q8N239 644 aa16.93■□□□□ 0.3
PRPF40B-210ENST00000549547 IFT57Q9NWB7 429 aa16.93■□□□□ 0.3
PRPF40B-210ENST00000549547 SRP68Q9UHB9 627 aaKnown RBP16.93■□□□□ 0.3
PRPF40B-210ENST00000549547 ZNF330Q9Y3S2 320 aaPredicted RBP16.93■□□□□ 0.3
PRPF40B-210ENST00000549547 ERBB4Q15303 1308 aa16.93■□□□□ 0.3
PRPF40B-210ENST00000549547 BCORQ6W2J9 1755 aa16.92■□□□□ 0.3
PRPF40B-210ENST00000549547 USPL1Q5W0Q7 1092 aa16.92■□□□□ 0.3
PRPF40B-210ENST00000549547 NGEFQ8N5V2 710 aa16.92■□□□□ 0.3
PRPF40B-210ENST00000549547 CD2APQ9Y5K6 639 aa16.92■□□□□ 0.3
PRPF40B-210ENST00000549547 PARP3Q9Y6F1 533 aa16.92■□□□□ 0.3
PRPF40B-210ENST00000549547 FKBP8Q14318 412 aa16.9■□□□□ 0.3
PRPF40B-210ENST00000549547 DIEXFQ68CQ4 756 aaKnown RBP16.9■□□□□ 0.3
PRPF40B-210ENST00000549547 KIF13BQ9NQT8 1826 aa16.9■□□□□ 0.3
PRPF40B-210ENST00000549547 RGL2O15211 777 aa16.89■□□□□ 0.29
PRPF40B-210ENST00000549547 HOXB7P09629 217 aa16.89■□□□□ 0.29
PRPF40B-210ENST00000549547 ZNF853P0CG23 659 aa16.89■□□□□ 0.29
PRPF40B-210ENST00000549547 DZIP3Q86Y13 1208 aaKnown RBP16.89■□□□□ 0.29
PRPF40B-210ENST00000549547 WWC1Q8IX03 1113 aa16.89■□□□□ 0.29
PRPF40B-210ENST00000549547 NBPF26B4DH59 902 aa16.88■□□□□ 0.29
PRPF40B-210ENST00000549547 NBPF10Q6P3W6 841 aaKnown RBP16.88■□□□□ 0.29
PRPF40B-210ENST00000549547 NBPF15Q8N660 670 aa16.88■□□□□ 0.29
PRPF40B-210ENST00000549547 MBIPQ9NS73 344 aa16.88■□□□□ 0.29
PRPF40B-210ENST00000549547 TBC1D2BQ9UPU7 963 aa16.88■□□□□ 0.29
PRPF40B-210ENST00000549547 ZNF652Q9Y2D9 606 aa16.88■□□□□ 0.29
PRPF40B-210ENST00000549547 IL16Q14005 1332 aa16.88■□□□□ 0.29
PRPF40B-210ENST00000549547 TM4SF1P30408 202 aa16.87■□□□□ 0.29
PRPF40B-210ENST00000549547 PIP4K2AP48426 406 aaPredicted RBP16.87■□□□□ 0.29
PRPF40B-210ENST00000549547 CHMP4AQ9BY43 222 aa16.87■□□□□ 0.29
PRPF40B-210ENST00000549547 CAMTA2O94983 1202 aa16.86■□□□□ 0.29
PRPF40B-210ENST00000549547 EIF2S2P20042 333 aaKnown RBP16.86■□□□□ 0.29
PRPF40B-210ENST00000549547 CLEC4GQ6UXB4 293 aa16.86■□□□□ 0.29
PRPF40B-210ENST00000549547 BCL2L12Q9HB09 334 aa16.86■□□□□ 0.29
PRPF40B-210ENST00000549547 AFDNP55196 1824 aaKnown RBP16.86■□□□□ 0.29
PRPF40B-210ENST00000549547 C10orf71Q711Q0 1435 aa16.86■□□□□ 0.29
PRPF40B-210ENST00000549547 NRXN2Q9P2S2 1712 aa16.85■□□□□ 0.29
PRPF40B-210ENST00000549547 DDR1Q08345 913 aa16.85■□□□□ 0.29
PRPF40B-210ENST00000549547 NFIXQ14938 502 aa16.85■□□□□ 0.29
PRPF40B-210ENST00000549547 KIF6Q6ZMV9 814 aa16.85■□□□□ 0.29
PRPF40B-210ENST00000549547 WDR63Q8IWG1 891 aa16.85■□□□□ 0.29
PRPF40B-210ENST00000549547 POLRMTO00411 1230 aaKnown RBP16.84■□□□□ 0.29
PRPF40B-210ENST00000549547 MYL6BP14649 208 aa16.84■□□□□ 0.29
PRPF40B-210ENST00000549547 TGFB2P61812 414 aa16.83■□□□□ 0.28
PRPF40B-210ENST00000549547 HDGFL1Q5TGJ6 251 aa16.83■□□□□ 0.28
PRPF40B-210ENST00000549547 DUSP27Q5VZP5 1158 aa16.83■□□□□ 0.28
PRPF40B-210ENST00000549547 CARMIL3Q8ND23 1372 aa16.83■□□□□ 0.28
PRPF40B-210ENST00000549547 NLGN2Q8NFZ4 835 aa16.83■□□□□ 0.28
PRPF40B-210ENST00000549547 SETDB2Q96T68 719 aa16.83■□□□□ 0.28
PRPF40B-210ENST00000549547 NUP98P52948 1817 aa16.82■□□□□ 0.28
PRPF40B-210ENST00000549547 ERVV-1B6SEH8 477 aa16.82■□□□□ 0.28
PRPF40B-210ENST00000549547 SERPINB2P05120 415 aa16.82■□□□□ 0.28
PRPF40B-210ENST00000549547 KRT24Q2M2I5 525 aa16.82■□□□□ 0.28
PRPF40B-210ENST00000549547 DDX21Q9NR30 783 aaKnown RBP eCLIP16.82■□□□□ 0.28
PRPF40B-210ENST00000549547 SALL2Q9Y467 1007 aaPredicted RBP16.82■□□□□ 0.28
PRPF40B-210ENST00000549547 MAP3K15Q6ZN16 1313 aa16.81■□□□□ 0.28
PRPF40B-210ENST00000549547 SENP3-EIF4A1A0A087X0R7 540 aa16.81■□□□□ 0.28
PRPF40B-210ENST00000549547 TBC1D9BQ66K14 1250 aa16.81■□□□□ 0.28
PRPF40B-210ENST00000549547 BICDL1Q6ZP65 573 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms