RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 ZNF831Q5JPB2 1677 aa12.13□□□□□ -0.47
SNHG1-215ENST00000540904 RFC4P35249 363 aa12.13□□□□□ -0.47
SNHG1-215ENST00000540904 PNISRQ8TF01 805 aaKnown RBP12.13□□□□□ -0.47
SNHG1-215ENST00000540904 ARHGEF1Q92888 912 aaKnown RBP12.13□□□□□ -0.47
SNHG1-215ENST00000540904 ARXQ96QS3 562 aa12.13□□□□□ -0.47
SNHG1-215ENST00000540904 TEX13AQ9BXU3 409 aaPredicted RBP12.13□□□□□ -0.47
SNHG1-215ENST00000540904 QSER1Q2KHR3 1735 aa12.13□□□□□ -0.47
SNHG1-215ENST00000540904 VIRMAQ69YN4 1812 aaKnown RBP12.12□□□□□ -0.47
SNHG1-215ENST00000540904 APAF1O14727 1248 aa12.12□□□□□ -0.47
SNHG1-215ENST00000540904 ZBTB1Q9Y2K1 713 aa12.12□□□□□ -0.47
SNHG1-215ENST00000540904 TJP1Q07157 1748 aa12.11□□□□□ -0.47
SNHG1-215ENST00000540904 SIPA1L3O60292 1781 aaPredicted RBP12.11□□□□□ -0.47
SNHG1-215ENST00000540904 PRAMEF22A3QJZ6 481 aa12.11□□□□□ -0.47
SNHG1-215ENST00000540904 CAPN15O75808 1086 aa12.11□□□□□ -0.47
SNHG1-215ENST00000540904 SNRPA1P09661 255 aaKnown RBP12.11□□□□□ -0.47
SNHG1-215ENST00000540904 CANXP27824 592 aaKnown RBP12.11□□□□□ -0.47
SNHG1-215ENST00000540904 FHDC1Q9C0D6 1143 aaPredicted RBP12.11□□□□□ -0.47
SNHG1-215ENST00000540904 TRIM35Q9UPQ4 493 aa12.11□□□□□ -0.47
SNHG1-215ENST00000540904 COL5A3P25940 1745 aaPredicted RBP12.11□□□□□ -0.47
SNHG1-215ENST00000540904 UBR3Q6ZT12 1888 aa12.1□□□□□ -0.47
SNHG1-215ENST00000540904 KLHL34Q8N239 644 aa12.1□□□□□ -0.47
SNHG1-215ENST00000540904 SPINK5Q9NQ38 1064 aaPredicted RBP12.1□□□□□ -0.47
SNHG1-215ENST00000540904 SRP68Q9UHB9 627 aaKnown RBP12.1□□□□□ -0.47
SNHG1-215ENST00000540904 TSPYL4Q9UJ04 414 aa12.1□□□□□ -0.47
SNHG1-215ENST00000540904 USP16Q9Y5T5 823 aa12.1□□□□□ -0.47
SNHG1-215ENST00000540904 UBR2Q8IWV8 1755 aa12.1□□□□□ -0.47
SNHG1-215ENST00000540904 SOS1Q07889 1333 aaPredicted RBP12.1□□□□□ -0.47
SNHG1-215ENST00000540904 CICQ96RK0 1608 aaPredicted RBP12.09□□□□□ -0.47
SNHG1-215ENST00000540904 SENP3-EIF4A1A0A087X0R7 540 aa12.09□□□□□ -0.47
SNHG1-215ENST00000540904 A1BGP04217 495 aa12.09□□□□□ -0.47
SNHG1-215ENST00000540904 ZNF330Q9Y3S2 320 aaPredicted RBP12.09□□□□□ -0.47
SNHG1-215ENST00000540904 LAS1LQ9Y4W2 734 aaKnown RBP12.09□□□□□ -0.47
SNHG1-215ENST00000540904 DLG5Q8TDM6 1919 aa12.09□□□□□ -0.47
SNHG1-215ENST00000540904 ZPR1O75312 459 aa12.08□□□□□ -0.48
SNHG1-215ENST00000540904 GYS1P13807 737 aa12.08□□□□□ -0.48
SNHG1-215ENST00000540904 EIF4A1P60842 406 aaKnown RBP12.08□□□□□ -0.48
SNHG1-215ENST00000540904 NLGN1Q8N2Q7 840 aa12.08□□□□□ -0.48
SNHG1-215ENST00000540904 SYT17Q9BSW7 474 aa12.08□□□□□ -0.48
SNHG1-215ENST00000540904 USP42Q9H9J4 1324 aaKnown RBP12.08□□□□□ -0.48
SNHG1-215ENST00000540904 COL15A1P39059 1388 aa12.07□□□□□ -0.48
SNHG1-215ENST00000540904 MYH14Q7Z406 1995 aaKnown RBP12.07□□□□□ -0.48
SNHG1-215ENST00000540904 MMP10P09238 476 aa12.07□□□□□ -0.48
SNHG1-215ENST00000540904 PIP4K2AP48426 406 aaPredicted RBP12.07□□□□□ -0.48
SNHG1-215ENST00000540904 USPL1Q5W0Q7 1092 aa12.07□□□□□ -0.48
SNHG1-215ENST00000540904 NPM2Q86SE8 214 aaKnown RBP12.07□□□□□ -0.48
SNHG1-215ENST00000540904 FAM9BQ8IZU0 186 aa12.07□□□□□ -0.48
SNHG1-215ENST00000540904 GIGYF1O75420 1035 aaPredicted RBP12.06□□□□□ -0.48
SNHG1-215ENST00000540904 EIF5P55010 431 aaKnown RBP12.06□□□□□ -0.48
SNHG1-215ENST00000540904 FKBP8Q14318 412 aa12.06□□□□□ -0.48
SNHG1-215ENST00000540904 BABAM1Q9NWV8 329 aa12.06□□□□□ -0.48
SNHG1-215ENST00000540904 A0A087WZG4 1122 aa12.05□□□□□ -0.48
SNHG1-215ENST00000540904 CHL1O00533 1208 aa12.05□□□□□ -0.48
SNHG1-215ENST00000540904 IL6STP40189 918 aaPredicted RBP12.05□□□□□ -0.48
SNHG1-215ENST00000540904 NARFQ9UHQ1 456 aa12.05□□□□□ -0.48
SNHG1-215ENST00000540904 CALD1Q05682 793 aaKnown RBP12.04□□□□□ -0.48
SNHG1-215ENST00000540904 CFAP44Q96MT7 982 aa12.04□□□□□ -0.48
SNHG1-215ENST00000540904 TBC1D2BQ9UPU7 963 aa12.04□□□□□ -0.48
SNHG1-215ENST00000540904 NBPF26B4DH59 902 aa12.03□□□□□ -0.48
SNHG1-215ENST00000540904 DSG3P32926 999 aa12.03□□□□□ -0.48
SNHG1-215ENST00000540904 KRT24Q2M2I5 525 aa12.03□□□□□ -0.48
SNHG1-215ENST00000540904 NBPF10Q6P3W6 841 aaKnown RBP12.03□□□□□ -0.48
SNHG1-215ENST00000540904 NBPF15Q8N660 670 aa12.03□□□□□ -0.48
SNHG1-215ENST00000540904 NLGN2Q8NFZ4 835 aa12.03□□□□□ -0.48
SNHG1-215ENST00000540904 SALL2Q9Y467 1007 aaPredicted RBP12.03□□□□□ -0.48
SNHG1-215ENST00000540904 PARP3Q9Y6F1 533 aa12.03□□□□□ -0.48
SNHG1-215ENST00000540904 COL24A1Q17RW2 1714 aa12.03□□□□□ -0.48
SNHG1-215ENST00000540904 KDM3BQ7LBC6 1761 aa12.02□□□□□ -0.48
SNHG1-215ENST00000540904 EIF2S2P20042 333 aaKnown RBP12.02□□□□□ -0.49
SNHG1-215ENST00000540904 DIEXFQ68CQ4 756 aaKnown RBP12.02□□□□□ -0.49
SNHG1-215ENST00000540904 DZIP3Q86Y13 1208 aaKnown RBP12.02□□□□□ -0.49
SNHG1-215ENST00000540904 NGEFQ8N5V2 710 aa12.02□□□□□ -0.49
SNHG1-215ENST00000540904 BCL2L12Q9HB09 334 aa12.02□□□□□ -0.49
SNHG1-215ENST00000540904 MBIPQ9NS73 344 aa12.02□□□□□ -0.49
SNHG1-215ENST00000540904 IFT57Q9NWB7 429 aa12.02□□□□□ -0.49
SNHG1-215ENST00000540904 CD2APQ9Y5K6 639 aa12.02□□□□□ -0.49
SNHG1-215ENST00000540904 C4AP0C0L4 1744 aa12.02□□□□□ -0.49
SNHG1-215ENST00000540904 CAMTA2O94983 1202 aa12.01□□□□□ -0.49
SNHG1-215ENST00000540904 ZNF853P0CG23 659 aa12.01□□□□□ -0.49
SNHG1-215ENST00000540904 MYL6BP14649 208 aa12.01□□□□□ -0.49
SNHG1-215ENST00000540904 GNAI1P63096 354 aa12.01□□□□□ -0.49
SNHG1-215ENST00000540904 DDR1Q08345 913 aa12.01□□□□□ -0.49
SNHG1-215ENST00000540904 NFIXQ14938 502 aa12.01□□□□□ -0.49
SNHG1-215ENST00000540904 CCDC27Q2M243 656 aa12.01□□□□□ -0.49
SNHG1-215ENST00000540904 BICDL1Q6ZP65 573 aa12.01□□□□□ -0.49
SNHG1-215ENST00000540904 WWC1Q8IX03 1113 aa12.01□□□□□ -0.49
SNHG1-215ENST00000540904 NECTIN2Q92692 538 aa12.01□□□□□ -0.49
SNHG1-215ENST00000540904 POLRMTO00411 1230 aaKnown RBP12□□□□□ -0.49
SNHG1-215ENST00000540904 TM4SF1P30408 202 aa12□□□□□ -0.49
SNHG1-215ENST00000540904 PELP1Q8IZL8 1130 aaKnown RBP12□□□□□ -0.49
SNHG1-215ENST00000540904 KCNA4P22459 653 aa11.99□□□□□ -0.49
SNHG1-215ENST00000540904 TBC1D9BQ66K14 1250 aa11.99□□□□□ -0.49
SNHG1-215ENST00000540904 ERBB4Q15303 1308 aa11.98□□□□□ -0.49
SNHG1-215ENST00000540904 CCER2I3L3R5 266 aa11.98□□□□□ -0.49
SNHG1-215ENST00000540904 GPR162Q16538 588 aa11.98□□□□□ -0.49
SNHG1-215ENST00000540904 DUSP27Q5VZP5 1158 aa11.98□□□□□ -0.49
SNHG1-215ENST00000540904 TSR2Q969E8 191 aaKnown RBP11.98□□□□□ -0.49
SNHG1-215ENST00000540904 ZNF652Q9Y2D9 606 aa11.98□□□□□ -0.49
SNHG1-215ENST00000540904 ELL2O00472 640 aaPredicted RBP11.97□□□□□ -0.49
SNHG1-215ENST00000540904 ANXA1P04083 346 aa11.97□□□□□ -0.49
SNHG1-215ENST00000540904 SERPINB2P05120 415 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms