RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 SRP68Q9UHB9 627 aaKnown RBP19.92■□□□□ 0.78
UBE3B-212ENST00000540230 RRP7AQ9Y3A4 280 aaKnown RBP19.92■□□□□ 0.78
UBE3B-212ENST00000540230 GYS1P13807 737 aa19.92■□□□□ 0.78
UBE3B-212ENST00000540230 RFC4P35249 363 aa19.92■□□□□ 0.78
UBE3B-212ENST00000540230 TMPOP42166 694 aaKnown RBP19.92■□□□□ 0.78
UBE3B-212ENST00000540230 NLGN2Q8NFZ4 835 aa19.92■□□□□ 0.78
UBE3B-212ENST00000540230 RIPK4P57078 832 aa19.91■□□□□ 0.78
UBE3B-212ENST00000540230 TAF7Q15545 349 aaPredicted RBP19.91■□□□□ 0.78
UBE3B-212ENST00000540230 USP42Q9H9J4 1324 aaKnown RBP19.9■□□□□ 0.78
UBE3B-212ENST00000540230 COL15A1P39059 1388 aa19.89■□□□□ 0.78
UBE3B-212ENST00000540230 CANXP27824 592 aaKnown RBP19.89■□□□□ 0.77
UBE3B-212ENST00000540230 RUNDC1Q96C34 613 aa19.89■□□□□ 0.77
UBE3B-212ENST00000540230 MMP10P09238 476 aa19.88■□□□□ 0.77
UBE3B-212ENST00000540230 USP16Q9Y5T5 823 aa19.88■□□□□ 0.77
UBE3B-212ENST00000540230 STARD3NLO95772 234 aa19.87■□□□□ 0.77
UBE3B-212ENST00000540230 A1BGP04217 495 aa19.87■□□□□ 0.77
UBE3B-212ENST00000540230 NEUROD2Q15784 382 aa19.87■□□□□ 0.77
UBE3B-212ENST00000540230 FKBP8Q14318 412 aa19.86■□□□□ 0.77
UBE3B-212ENST00000540230 PIP4K2AP48426 406 aaPredicted RBP19.86■□□□□ 0.77
UBE3B-212ENST00000540230 NLGN1Q8N2Q7 840 aa19.86■□□□□ 0.77
UBE3B-212ENST00000540230 TEX13AQ9BXU3 409 aaPredicted RBP19.86■□□□□ 0.77
UBE3B-212ENST00000540230 LAMB4A4D0S4 1761 aa19.85■□□□□ 0.77
UBE3B-212ENST00000540230 ANP32CO43423 234 aa19.85■□□□□ 0.77
UBE3B-212ENST00000540230 EIF5P55010 431 aaKnown RBP19.85■□□□□ 0.77
UBE3B-212ENST00000540230 USPL1Q5W0Q7 1092 aa19.85■□□□□ 0.77
UBE3B-212ENST00000540230 TRIM35Q9UPQ4 493 aa19.85■□□□□ 0.77
UBE3B-212ENST00000540230 SNRPA1P09661 255 aaKnown RBP19.84■□□□□ 0.77
UBE3B-212ENST00000540230 BCL2L12Q9HB09 334 aa19.84■□□□□ 0.77
UBE3B-212ENST00000540230 PNISRQ8TF01 805 aaKnown RBP19.83■□□□□ 0.77
UBE3B-212ENST00000540230 NARFQ9UHQ1 456 aa19.83■□□□□ 0.77
UBE3B-212ENST00000540230 EIF4A1P60842 406 aaKnown RBP19.82■□□□□ 0.76
UBE3B-212ENST00000540230 DDR1Q08345 913 aa19.82■□□□□ 0.76
UBE3B-212ENST00000540230 ZNF330Q9Y3S2 320 aaPredicted RBP19.82■□□□□ 0.76
UBE3B-212ENST00000540230 CD2APQ9Y5K6 639 aa19.82■□□□□ 0.76
UBE3B-212ENST00000540230 KIF13BQ9NQT8 1826 aa19.82■□□□□ 0.76
UBE3B-212ENST00000540230 KIAA1551Q9HCM1 1747 aa19.82■□□□□ 0.76
UBE3B-212ENST00000540230 SCN7AQ01118 1682 aa19.82■□□□□ 0.76
UBE3B-212ENST00000540230 ZPR1O75312 459 aa19.81■□□□□ 0.76
UBE3B-212ENST00000540230 LMOD3Q0VAK6 560 aa19.81■□□□□ 0.76
UBE3B-212ENST00000540230 APAF1O14727 1248 aa19.81■□□□□ 0.76
UBE3B-212ENST00000540230 IL6STP40189 918 aaPredicted RBP19.81■□□□□ 0.76
UBE3B-212ENST00000540230 TSPYL4Q9UJ04 414 aa19.81■□□□□ 0.76
UBE3B-212ENST00000540230 C10orf71Q711Q0 1435 aa19.8■□□□□ 0.76
UBE3B-212ENST00000540230 NBPF26B4DH59 902 aa19.8■□□□□ 0.76
UBE3B-212ENST00000540230 GIGYF1O75420 1035 aaPredicted RBP19.8■□□□□ 0.76
UBE3B-212ENST00000540230 NBPF10Q6P3W6 841 aaKnown RBP19.8■□□□□ 0.76
UBE3B-212ENST00000540230 NBPF15Q8N660 670 aa19.8■□□□□ 0.76
UBE3B-212ENST00000540230 TM4SF1P30408 202 aa19.79■□□□□ 0.76
UBE3B-212ENST00000540230 MRS2Q9HD23 443 aa19.79■□□□□ 0.76
UBE3B-212ENST00000540230 TBC1D2BQ9UPU7 963 aa19.79■□□□□ 0.76
UBE3B-212ENST00000540230 PARP3Q9Y6F1 533 aa19.79■□□□□ 0.76
UBE3B-212ENST00000540230 BCORQ6W2J9 1755 aa19.79■□□□□ 0.76
UBE3B-212ENST00000540230 AFDNP55196 1824 aaKnown RBP19.78■□□□□ 0.76
UBE3B-212ENST00000540230 SENP3-EIF4A1A0A087X0R7 540 aa19.78■□□□□ 0.76
UBE3B-212ENST00000540230 POLRMTO00411 1230 aaKnown RBP19.78■□□□□ 0.76
UBE3B-212ENST00000540230 PELP1Q8IZL8 1130 aaKnown RBP19.78■□□□□ 0.76
UBE3B-212ENST00000540230 N4BP2Q86UW6 1770 aaPredicted RBP19.78■□□□□ 0.76
UBE3B-212ENST00000540230 DCAF8L1A6NGE4 600 aa19.77■□□□□ 0.76
UBE3B-212ENST00000540230 NFIXQ14938 502 aa19.77■□□□□ 0.76
UBE3B-212ENST00000540230 WWC3Q9ULE0 1092 aa19.77■□□□□ 0.76
UBE3B-212ENST00000540230 PXDNLA1KZ92 1463 aa19.77■□□□□ 0.75
UBE3B-212ENST00000540230 YBX3P16989 372 aaKnown RBP eCLIP19.76■□□□□ 0.75
UBE3B-212ENST00000540230 GPR162Q16538 588 aa19.76■□□□□ 0.75
UBE3B-212ENST00000540230 A0A087WZG4 1122 aa19.76■□□□□ 0.75
UBE3B-212ENST00000540230 CAMTA2O94983 1202 aa19.76■□□□□ 0.75
UBE3B-212ENST00000540230 NRXN2Q9P2S2 1712 aa19.76■□□□□ 0.75
UBE3B-212ENST00000540230 KRT24Q2M2I5 525 aa19.75■□□□□ 0.75
UBE3B-212ENST00000540230 DZIP3Q86Y13 1208 aaKnown RBP19.75■□□□□ 0.75
UBE3B-212ENST00000540230 LAS1LQ9Y4W2 734 aaKnown RBP19.75■□□□□ 0.75
UBE3B-212ENST00000540230 CHL1O00533 1208 aa19.74■□□□□ 0.75
UBE3B-212ENST00000540230 TBC1D9BQ66K14 1250 aa19.74■□□□□ 0.75
UBE3B-212ENST00000540230 BICDL1Q6ZP65 573 aa19.74■□□□□ 0.75
UBE3B-212ENST00000540230 BABAM1Q9NWV8 329 aa19.74■□□□□ 0.75
UBE3B-212ENST00000540230 A0A0G2JLW4 131 aa19.71■□□□□ 0.75
UBE3B-212ENST00000540230 BRCA1P38398 1863 aaKnown RBP19.71■□□□□ 0.75
UBE3B-212ENST00000540230 CARMIL3Q8ND23 1372 aa19.71■□□□□ 0.75
UBE3B-212ENST00000540230 SERPINB2P05120 415 aa19.71■□□□□ 0.75
UBE3B-212ENST00000540230 NPM2Q86SE8 214 aaKnown RBP19.71■□□□□ 0.75
UBE3B-212ENST00000540230 DPEP1P16444 411 aa19.7■□□□□ 0.74
UBE3B-212ENST00000540230 NGEFQ8N5V2 710 aa19.7■□□□□ 0.74
UBE3B-212ENST00000540230 CHD4Q14839 1912 aa19.7■□□□□ 0.74
UBE3B-212ENST00000540230 MYL6BP14649 208 aa19.69■□□□□ 0.74
UBE3B-212ENST00000540230 EIF2S2P20042 333 aaKnown RBP19.69■□□□□ 0.74
UBE3B-212ENST00000540230 TGFB2P61812 414 aa19.69■□□□□ 0.74
UBE3B-212ENST00000540230 CFAP44Q96MT7 982 aa19.69■□□□□ 0.74
UBE3B-212ENST00000540230 ZNF853P0CG23 659 aa19.68■□□□□ 0.74
UBE3B-212ENST00000540230 KCNA3P22001 575 aa19.68■□□□□ 0.74
UBE3B-212ENST00000540230 YY1P25490 414 aa19.68■□□□□ 0.74
UBE3B-212ENST00000540230 MBIPQ9NS73 344 aa19.68■□□□□ 0.74
UBE3B-212ENST00000540230 ANXA1P04083 346 aa19.67■□□□□ 0.74
UBE3B-212ENST00000540230 PDIA6Q15084 440 aa19.67■□□□□ 0.74
UBE3B-212ENST00000540230 HLFQ16534 295 aa19.67■□□□□ 0.74
UBE3B-212ENST00000540230 PROSER3Q2NL68 480 aa19.67■□□□□ 0.74
UBE3B-212ENST00000540230 TTLL7Q6ZT98 887 aa19.67■□□□□ 0.74
UBE3B-212ENST00000540230 LRP10Q7Z4F1 713 aa19.67■□□□□ 0.74
UBE3B-212ENST00000540230 NECTIN2Q92692 538 aa19.67■□□□□ 0.74
UBE3B-212ENST00000540230 ANKRD31Q8N7Z5 1873 aa19.67■□□□□ 0.74
UBE3B-212ENST00000540230 CHRNA5P30532 468 aa19.66■□□□□ 0.74
UBE3B-212ENST00000540230 CCDC24Q8N4L8 307 aa19.66■□□□□ 0.74
UBE3B-212ENST00000540230 NUP98P52948 1817 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms