RNA–Protein interactions for RNA: ENST00000536429.1

PRKDC-206, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 659 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-206ENST00000536429 RFC4P35249 363 aa17.4■□□□□ 0.38
PRKDC-206ENST00000536429 TMPOP42166 694 aaKnown RBP17.4■□□□□ 0.38
PRKDC-206ENST00000536429 RIPK4P57078 832 aa17.4■□□□□ 0.38
PRKDC-206ENST00000536429 TAF7Q15545 349 aaPredicted RBP17.4■□□□□ 0.38
PRKDC-206ENST00000536429 NLGN2Q8NFZ4 835 aa17.4■□□□□ 0.38
PRKDC-206ENST00000536429 MMP10P09238 476 aa17.38■□□□□ 0.37
PRKDC-206ENST00000536429 CANXP27824 592 aaKnown RBP17.38■□□□□ 0.37
PRKDC-206ENST00000536429 RUNDC1Q96C34 613 aa17.38■□□□□ 0.37
PRKDC-206ENST00000536429 USP42Q9H9J4 1324 aaKnown RBP17.38■□□□□ 0.37
PRKDC-206ENST00000536429 STARD3NLO95772 234 aa17.37■□□□□ 0.37
PRKDC-206ENST00000536429 FKBP8Q14318 412 aa17.37■□□□□ 0.37
PRKDC-206ENST00000536429 NEUROD2Q15784 382 aa17.37■□□□□ 0.37
PRKDC-206ENST00000536429 USP16Q9Y5T5 823 aa17.37■□□□□ 0.37
PRKDC-206ENST00000536429 A1BGP04217 495 aa17.36■□□□□ 0.37
PRKDC-206ENST00000536429 PIP4K2AP48426 406 aaPredicted RBP17.36■□□□□ 0.37
PRKDC-206ENST00000536429 DLG5Q8TDM6 1919 aa17.36■□□□□ 0.37
PRKDC-206ENST00000536429 COL15A1P39059 1388 aa17.36■□□□□ 0.37
PRKDC-206ENST00000536429 EIF5P55010 431 aaKnown RBP17.35■□□□□ 0.37
PRKDC-206ENST00000536429 USPL1Q5W0Q7 1092 aa17.35■□□□□ 0.37
PRKDC-206ENST00000536429 NLGN1Q8N2Q7 840 aa17.35■□□□□ 0.37
PRKDC-206ENST00000536429 TRIM35Q9UPQ4 493 aa17.35■□□□□ 0.37
PRKDC-206ENST00000536429 C4AP0C0L4 1744 aa17.35■□□□□ 0.37
PRKDC-206ENST00000536429 ANP32CO43423 234 aa17.34■□□□□ 0.37
PRKDC-206ENST00000536429 SNRPA1P09661 255 aaKnown RBP17.34■□□□□ 0.37
PRKDC-206ENST00000536429 TEX13AQ9BXU3 409 aaPredicted RBP17.34■□□□□ 0.37
PRKDC-206ENST00000536429 BCL2L12Q9HB09 334 aa17.34■□□□□ 0.37
PRKDC-206ENST00000536429 DDR1Q08345 913 aa17.33■□□□□ 0.36
PRKDC-206ENST00000536429 PNISRQ8TF01 805 aaKnown RBP17.33■□□□□ 0.36
PRKDC-206ENST00000536429 ZPR1O75312 459 aa17.32■□□□□ 0.36
PRKDC-206ENST00000536429 EIF4A1P60842 406 aaKnown RBP17.32■□□□□ 0.36
PRKDC-206ENST00000536429 NARFQ9UHQ1 456 aa17.32■□□□□ 0.36
PRKDC-206ENST00000536429 ZNF330Q9Y3S2 320 aaPredicted RBP17.32■□□□□ 0.36
PRKDC-206ENST00000536429 CD2APQ9Y5K6 639 aa17.32■□□□□ 0.36
PRKDC-206ENST00000536429 SENP3-EIF4A1A0A087X0R7 540 aa17.31■□□□□ 0.36
PRKDC-206ENST00000536429 APAF1O14727 1248 aa17.31■□□□□ 0.36
PRKDC-206ENST00000536429 LMOD3Q0VAK6 560 aa17.31■□□□□ 0.36
PRKDC-206ENST00000536429 TSPYL4Q9UJ04 414 aa17.31■□□□□ 0.36
PRKDC-206ENST00000536429 NBPF26B4DH59 902 aa17.3■□□□□ 0.36
PRKDC-206ENST00000536429 GIGYF1O75420 1035 aaPredicted RBP17.3■□□□□ 0.36
PRKDC-206ENST00000536429 IL6STP40189 918 aaPredicted RBP17.3■□□□□ 0.36
PRKDC-206ENST00000536429 NBPF10Q6P3W6 841 aaKnown RBP17.3■□□□□ 0.36
PRKDC-206ENST00000536429 NBPF15Q8N660 670 aa17.3■□□□□ 0.36
PRKDC-206ENST00000536429 MRS2Q9HD23 443 aa17.3■□□□□ 0.36
PRKDC-206ENST00000536429 TBC1D2BQ9UPU7 963 aa17.3■□□□□ 0.36
PRKDC-206ENST00000536429 TM4SF1P30408 202 aa17.29■□□□□ 0.36
PRKDC-206ENST00000536429 PELP1Q8IZL8 1130 aaKnown RBP17.29■□□□□ 0.36
PRKDC-206ENST00000536429 WWC3Q9ULE0 1092 aa17.29■□□□□ 0.36
PRKDC-206ENST00000536429 KDM3BQ7LBC6 1761 aa17.28■□□□□ 0.36
PRKDC-206ENST00000536429 POLRMTO00411 1230 aaKnown RBP17.28■□□□□ 0.36
PRKDC-206ENST00000536429 NFIXQ14938 502 aa17.28■□□□□ 0.36
PRKDC-206ENST00000536429 PARP3Q9Y6F1 533 aa17.28■□□□□ 0.36
PRKDC-206ENST00000536429 A0A087WZG4 1122 aa17.27■□□□□ 0.36
PRKDC-206ENST00000536429 YBX3P16989 372 aaKnown RBP eCLIP17.27■□□□□ 0.365e-9■□□□□ 11.1
PRKDC-206ENST00000536429 GPR162Q16538 588 aa17.27■□□□□ 0.36
PRKDC-206ENST00000536429 C10orf71Q711Q0 1435 aa17.27■□□□□ 0.35
PRKDC-206ENST00000536429 DCAF8L1A6NGE4 600 aa17.26■□□□□ 0.35
PRKDC-206ENST00000536429 CAMTA2O94983 1202 aa17.26■□□□□ 0.35
PRKDC-206ENST00000536429 KRT24Q2M2I5 525 aa17.26■□□□□ 0.35
PRKDC-206ENST00000536429 BICDL1Q6ZP65 573 aa17.26■□□□□ 0.35
PRKDC-206ENST00000536429 LAS1LQ9Y4W2 734 aaKnown RBP17.26■□□□□ 0.35
PRKDC-206ENST00000536429 CHL1O00533 1208 aa17.25■□□□□ 0.35
PRKDC-206ENST00000536429 TBC1D9BQ66K14 1250 aa17.25■□□□□ 0.35
PRKDC-206ENST00000536429 DZIP3Q86Y13 1208 aaKnown RBP17.25■□□□□ 0.35
PRKDC-206ENST00000536429 PXDNLA1KZ92 1463 aa17.24■□□□□ 0.35
PRKDC-206ENST00000536429 BABAM1Q9NWV8 329 aa17.24■□□□□ 0.35
PRKDC-206ENST00000536429 A0A0G2JLW4 131 aa17.23■□□□□ 0.35
PRKDC-206ENST00000536429 SERPINB2P05120 415 aa17.22■□□□□ 0.35
PRKDC-206ENST00000536429 DPEP1P16444 411 aa17.22■□□□□ 0.35
PRKDC-206ENST00000536429 NGEFQ8N5V2 710 aa17.22■□□□□ 0.35
PRKDC-206ENST00000536429 MYL6BP14649 208 aa17.21■□□□□ 0.35
PRKDC-206ENST00000536429 EIF2S2P20042 333 aaKnown RBP17.21■□□□□ 0.35
PRKDC-206ENST00000536429 NPM2Q86SE8 214 aaKnown RBP17.21■□□□□ 0.35
PRKDC-206ENST00000536429 SCN7AQ01118 1682 aa17.2■□□□□ 0.34
PRKDC-206ENST00000536429 CARMIL3Q8ND23 1372 aa17.2■□□□□ 0.34
PRKDC-206ENST00000536429 ANXA1P04083 346 aa17.2■□□□□ 0.34
PRKDC-206ENST00000536429 ZNF853P0CG23 659 aa17.2■□□□□ 0.34
PRKDC-206ENST00000536429 KCNA3P22001 575 aa17.2■□□□□ 0.34
PRKDC-206ENST00000536429 TGFB2P61812 414 aa17.2■□□□□ 0.34
PRKDC-206ENST00000536429 PDIA6Q15084 440 aa17.2■□□□□ 0.34
PRKDC-206ENST00000536429 PROSER3Q2NL68 480 aa17.2■□□□□ 0.34
PRKDC-206ENST00000536429 TTLL7Q6ZT98 887 aa17.2■□□□□ 0.34
PRKDC-206ENST00000536429 NECTIN2Q92692 538 aa17.2■□□□□ 0.34
PRKDC-206ENST00000536429 CFAP44Q96MT7 982 aa17.2■□□□□ 0.34
PRKDC-206ENST00000536429 MBIPQ9NS73 344 aa17.2■□□□□ 0.34
PRKDC-206ENST00000536429 KIAA1551Q9HCM1 1747 aa17.19■□□□□ 0.34
PRKDC-206ENST00000536429 YY1P25490 414 aa17.19■□□□□ 0.34
PRKDC-206ENST00000536429 CHRNA5P30532 468 aa17.19■□□□□ 0.34
PRKDC-206ENST00000536429 HLFQ16534 295 aa17.19■□□□□ 0.34
PRKDC-206ENST00000536429 LRP10Q7Z4F1 713 aa17.19■□□□□ 0.34
PRKDC-206ENST00000536429 CCDC24Q8N4L8 307 aa17.19■□□□□ 0.34
PRKDC-206ENST00000536429 LAMB4A4D0S4 1761 aa17.19■□□□□ 0.34
PRKDC-206ENST00000536429 KIF13BQ9NQT8 1826 aa17.18■□□□□ 0.34
PRKDC-206ENST00000536429 FAM9BQ8IZU0 186 aa17.17■□□□□ 0.34
PRKDC-206ENST00000536429 IFT57Q9NWB7 429 aa17.17■□□□□ 0.34
PRKDC-206ENST00000536429 PRR5LQ6MZQ0 368 aa17.16■□□□□ 0.34
PRKDC-206ENST00000536429 SETDB2Q96T68 719 aa17.16■□□□□ 0.34
PRKDC-206ENST00000536429 SALL2Q9Y467 1007 aaPredicted RBP17.16■□□□□ 0.34
PRKDC-206ENST00000536429 N4BP2Q86UW6 1770 aaPredicted RBP17.15■□□□□ 0.34
PRKDC-206ENST00000536429 GRIN3BO60391 1043 aa17.15■□□□□ 0.34
PRKDC-206ENST00000536429 CLEC4GQ6UXB4 293 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms