RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 HEG1Q9ULI3 1381 aa6.77□□□□□ -1.33
USH1C-210ENST00000534556 SOS1Q07889 1333 aaPredicted RBP6.76□□□□□ -1.33
USH1C-210ENST00000534556 ZNF316A6NFI3 1004 aaPredicted RBP6.76□□□□□ -1.33
USH1C-210ENST00000534556 A1BGP04217 495 aa6.76□□□□□ -1.33
USH1C-210ENST00000534556 YBX3P16989 372 aaKnown RBP eCLIP6.76□□□□□ -1.33
USH1C-210ENST00000534556 ZEB1P37275 1124 aaPredicted RBP6.76□□□□□ -1.33
USH1C-210ENST00000534556 DDR1Q08345 913 aa6.76□□□□□ -1.33
USH1C-210ENST00000534556 FKBP8Q14318 412 aa6.76□□□□□ -1.33
USH1C-210ENST00000534556 NFE2L2Q16236 605 aa6.76□□□□□ -1.33
USH1C-210ENST00000534556 CCDC87Q9NVE4 849 aa6.76□□□□□ -1.33
USH1C-210ENST00000534556 ADAMTS8Q9UP79 889 aa6.76□□□□□ -1.33
USH1C-210ENST00000534556 RRP7AQ9Y3A4 280 aaKnown RBP6.76□□□□□ -1.33
USH1C-210ENST00000534556 RTCBQ9Y3I0 505 aaKnown RBP6.76□□□□□ -1.33
USH1C-210ENST00000534556 ANKRD36CQ5JPF3 1778 aa6.76□□□□□ -1.33
USH1C-210ENST00000534556 TAF1P21675 1872 aa6.76□□□□□ -1.33
USH1C-210ENST00000534556 LAMB2P55268 1798 aa6.75□□□□□ -1.33
USH1C-210ENST00000534556 SENP3-EIF4A1A0A087X0R7 540 aa6.75□□□□□ -1.33
USH1C-210ENST00000534556 BTBD11A6QL63 1104 aa6.75□□□□□ -1.33
USH1C-210ENST00000534556 TMPOP42166 694 aaKnown RBP6.75□□□□□ -1.33
USH1C-210ENST00000534556 EIF5P55010 431 aaKnown RBP6.75□□□□□ -1.33
USH1C-210ENST00000534556 TEFQ10587 303 aa6.75□□□□□ -1.33
USH1C-210ENST00000534556 TRAPPC3LQ5T215 181 aa6.75□□□□□ -1.33
USH1C-210ENST00000534556 FLAD1Q8NFF5 587 aa6.75□□□□□ -1.33
USH1C-210ENST00000534556 TRIM35Q9UPQ4 493 aa6.75□□□□□ -1.33
USH1C-210ENST00000534556 USP42Q9H9J4 1324 aaKnown RBP6.75□□□□□ -1.33
USH1C-210ENST00000534556 ARFGEF2Q9Y6D5 1785 aa6.74□□□□□ -1.33
USH1C-210ENST00000534556 PXDNLA1KZ92 1463 aa6.74□□□□□ -1.33
USH1C-210ENST00000534556 SLX4Q8IY92 1834 aa6.74□□□□□ -1.33
USH1C-210ENST00000534556 COL15A1P39059 1388 aa6.74□□□□□ -1.33
USH1C-210ENST00000534556 NBPF26B4DH59 902 aa6.74□□□□□ -1.33
USH1C-210ENST00000534556 HTATSF1O43719 755 aaKnown RBP6.74□□□□□ -1.33
USH1C-210ENST00000534556 MMP10P09238 476 aa6.74□□□□□ -1.33
USH1C-210ENST00000534556 CANXP27824 592 aaKnown RBP6.74□□□□□ -1.33
USH1C-210ENST00000534556 TM4SF1P30408 202 aa6.74□□□□□ -1.33
USH1C-210ENST00000534556 USPL1Q5W0Q7 1092 aa6.74□□□□□ -1.33
USH1C-210ENST00000534556 NBPF10Q6P3W6 841 aaKnown RBP6.74□□□□□ -1.33
USH1C-210ENST00000534556 VSIG10Q8N0Z9 540 aa6.74□□□□□ -1.33
USH1C-210ENST00000534556 KLHL34Q8N239 644 aa6.74□□□□□ -1.33
USH1C-210ENST00000534556 NBPF15Q8N660 670 aa6.74□□□□□ -1.33
USH1C-210ENST00000534556 WWC3Q9ULE0 1092 aa6.74□□□□□ -1.33
USH1C-210ENST00000534556 C10orf71Q711Q0 1435 aa6.74□□□□□ -1.33
USH1C-210ENST00000534556 TNRC6CQ9HCJ0 1690 aaKnown RBP6.74□□□□□ -1.33
USH1C-210ENST00000534556 FER1L6Q2WGJ9 1857 aa6.73□□□□□ -1.33
USH1C-210ENST00000534556 CARMIL3Q8ND23 1372 aa6.73□□□□□ -1.33
USH1C-210ENST00000534556 ADRA2BP18089 450 aa6.73□□□□□ -1.33
USH1C-210ENST00000534556 KCNA3P22001 575 aa6.73□□□□□ -1.33
USH1C-210ENST00000534556 POLD1P28340 1107 aa6.73□□□□□ -1.33
USH1C-210ENST00000534556 TAF7Q15545 349 aaPredicted RBP6.73□□□□□ -1.33
USH1C-210ENST00000534556 KRT24Q2M2I5 525 aa6.73□□□□□ -1.33
USH1C-210ENST00000534556 DICER1Q9UPY3 1922 aaKnown RBP6.73□□□□□ -1.33
USH1C-210ENST00000534556 POLRMTO00411 1230 aaKnown RBP6.72□□□□□ -1.33
USH1C-210ENST00000534556 RFC4P35249 363 aa6.72□□□□□ -1.33
USH1C-210ENST00000534556 RIPK4P57078 832 aa6.72□□□□□ -1.33
USH1C-210ENST00000534556 EIF4A1P60842 406 aaKnown RBP6.72□□□□□ -1.33
USH1C-210ENST00000534556 NFIXQ14938 502 aa6.72□□□□□ -1.33
USH1C-210ENST00000534556 NEUROD2Q15784 382 aa6.72□□□□□ -1.33
USH1C-210ENST00000534556 FMNL2Q96PY5 1086 aa6.72□□□□□ -1.33
USH1C-210ENST00000534556 NARFQ9UHQ1 456 aa6.72□□□□□ -1.33
USH1C-210ENST00000534556 TBC1D2BQ9UPU7 963 aa6.72□□□□□ -1.33
USH1C-210ENST00000534556 CACNA1FO60840 1977 aa6.71□□□□□ -1.33
USH1C-210ENST00000534556 DDX60Q8IY21 1712 aaKnown RBP6.71□□□□□ -1.34
USH1C-210ENST00000534556 A0A0G2JLW4 131 aa6.71□□□□□ -1.34
USH1C-210ENST00000534556 GIGYF1O75420 1035 aaPredicted RBP6.71□□□□□ -1.34
USH1C-210ENST00000534556 CAMTA2O94983 1202 aa6.71□□□□□ -1.34
USH1C-210ENST00000534556 TBC1D9BQ66K14 1250 aa6.71□□□□□ -1.34
USH1C-210ENST00000534556 LRP10Q7Z4F1 713 aa6.71□□□□□ -1.34
USH1C-210ENST00000534556 TTC5Q8N0Z6 440 aa6.71□□□□□ -1.34
USH1C-210ENST00000534556 NLGN1Q8N2Q7 840 aa6.71□□□□□ -1.34
USH1C-210ENST00000534556 CCDC24Q8N4L8 307 aa6.71□□□□□ -1.34
USH1C-210ENST00000534556 RTF1Q92541 710 aaKnown RBP6.71□□□□□ -1.34
USH1C-210ENST00000534556 RUNDC1Q96C34 613 aa6.71□□□□□ -1.34
USH1C-210ENST00000534556 CD2APQ9Y5K6 639 aa6.71□□□□□ -1.34
USH1C-210ENST00000534556 CHL1O00533 1208 aa6.7□□□□□ -1.34
USH1C-210ENST00000534556 APAF1O14727 1248 aa6.7□□□□□ -1.34
USH1C-210ENST00000534556 ANXA1P04083 346 aa6.7□□□□□ -1.34
USH1C-210ENST00000534556 SNRPA1P09661 255 aaKnown RBP6.7□□□□□ -1.34
USH1C-210ENST00000534556 DPEP1P16444 411 aa6.7□□□□□ -1.34
USH1C-210ENST00000534556 CHRNA5P30532 468 aa6.7□□□□□ -1.34
USH1C-210ENST00000534556 IL6STP40189 918 aaPredicted RBP6.7□□□□□ -1.34
USH1C-210ENST00000534556 PDIA6Q15084 440 aa6.7□□□□□ -1.34
USH1C-210ENST00000534556 HLFQ16534 295 aa6.7□□□□□ -1.34
USH1C-210ENST00000534556 PROSER3Q2NL68 480 aa6.7□□□□□ -1.34
USH1C-210ENST00000534556 TTLL7Q6ZT98 887 aa6.7□□□□□ -1.34
USH1C-210ENST00000534556 PNISRQ8TF01 805 aaKnown RBP6.7□□□□□ -1.34
USH1C-210ENST00000534556 COL4A1P02462 1669 aa6.7□□□□□ -1.34
USH1C-210ENST00000534556 MAPK8IP3Q9UPT6 1336 aa6.7□□□□□ -1.34
USH1C-210ENST00000534556 STARD3NLO95772 234 aa6.69□□□□□ -1.34
USH1C-210ENST00000534556 ZNF853P0CG23 659 aa6.69□□□□□ -1.34
USH1C-210ENST00000534556 GPR162Q16538 588 aa6.69□□□□□ -1.34
USH1C-210ENST00000534556 PELP1Q8IZL8 1130 aaKnown RBP6.69□□□□□ -1.34
USH1C-210ENST00000534556 TIAM2Q8IVF5 1701 aa6.69□□□□□ -1.34
USH1C-210ENST00000534556 ZPR1O75312 459 aa6.68□□□□□ -1.34
USH1C-210ENST00000534556 SERPINB2P05120 415 aa6.68□□□□□ -1.34
USH1C-210ENST00000534556 YY1P25490 414 aa6.68□□□□□ -1.34
USH1C-210ENST00000534556 HMGB2P26583 209 aaKnown RBP6.68□□□□□ -1.34
USH1C-210ENST00000534556 WDR43Q15061 677 aaKnown RBP eCLIP6.68□□□□□ -1.34
USH1C-210ENST00000534556 BICDL1Q6ZP65 573 aa6.68□□□□□ -1.34
USH1C-210ENST00000534556 SLC51AQ86UW1 340 aa6.68□□□□□ -1.34
USH1C-210ENST00000534556 DZIP3Q86Y13 1208 aaKnown RBP6.68□□□□□ -1.34
USH1C-210ENST00000534556 TEX13AQ9BXU3 409 aaPredicted RBP6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms