RNA–Protein interactions for RNA: ENST00000530442.5

CAPN1-218, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-218ENST00000530442 SCN7AQ01118 1682 aa14.3□□□□□ -0.12
CAPN1-218ENST00000530442 BCORQ6W2J9 1755 aa14.29□□□□□ -0.12
CAPN1-218ENST00000530442 GIGYF1O75420 1035 aaPredicted RBP14.29□□□□□ -0.12
CAPN1-218ENST00000530442 SNRPA1P09661 255 aaKnown RBP14.29□□□□□ -0.12
CAPN1-218ENST00000530442 HNRNPUQ00839 825 aaKnown RBP eCLIP14.29□□□□□ -0.12
CAPN1-218ENST00000530442 ZBTB1Q9Y2K1 713 aa14.29□□□□□ -0.12
CAPN1-218ENST00000530442 PNPLA7Q6ZV29 1317 aa14.29□□□□□ -0.12
CAPN1-218ENST00000530442 COL24A1Q17RW2 1714 aa14.29□□□□□ -0.12
CAPN1-218ENST00000530442 GNPATO15228 680 aa14.28□□□□□ -0.12
CAPN1-218ENST00000530442 RC3H1Q5TC82 1133 aaKnown RBP14.28□□□□□ -0.12
CAPN1-218ENST00000530442 INTS5Q6P9B9 1019 aaKnown RBP14.28□□□□□ -0.12
CAPN1-218ENST00000530442 USP16Q9Y5T5 823 aa14.28□□□□□ -0.12
CAPN1-218ENST00000530442 HMGB2P26583 209 aaKnown RBP14.27□□□□□ -0.13
CAPN1-218ENST00000530442 SMIM5Q71RC9 77 aa14.27□□□□□ -0.13
CAPN1-218ENST00000530442 TEX13AQ9BXU3 409 aaPredicted RBP14.27□□□□□ -0.13
CAPN1-218ENST00000530442 PDGFDQ9GZP0 370 aaPredicted RBP14.27□□□□□ -0.13
CAPN1-218ENST00000530442 CCDC87Q9NVE4 849 aa14.27□□□□□ -0.13
CAPN1-218ENST00000530442 TFCP2L1Q9NZI6 479 aa14.27□□□□□ -0.13
CAPN1-218ENST00000530442 COL15A1P39059 1388 aa14.26□□□□□ -0.13
CAPN1-218ENST00000530442 SOS1Q07889 1333 aaPredicted RBP14.26□□□□□ -0.13
CAPN1-218ENST00000530442 PHF14O94880 888 aa14.26□□□□□ -0.13
CAPN1-218ENST00000530442 STARD3NLO95772 234 aa14.26□□□□□ -0.13
CAPN1-218ENST00000530442 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.25□□□□□ -0.13
CAPN1-218ENST00000530442 SSFA2P28290 1259 aa14.25□□□□□ -0.13
CAPN1-218ENST00000530442 GOLGA2Q08379 1002 aa14.25□□□□□ -0.13
CAPN1-218ENST00000530442 ZBED9Q6R2W3 1325 aa14.24□□□□□ -0.13
CAPN1-218ENST00000530442 RPS6KA4O75676 772 aa14.24□□□□□ -0.13
CAPN1-218ENST00000530442 A1BGP04217 495 aa14.24□□□□□ -0.13
CAPN1-218ENST00000530442 HOXB7P09629 217 aa14.24□□□□□ -0.13
CAPN1-218ENST00000530442 PIP4K2AP48426 406 aaPredicted RBP14.24□□□□□ -0.13
CAPN1-218ENST00000530442 COL23A1Q86Y22 540 aaPredicted RBP14.24□□□□□ -0.13
CAPN1-218ENST00000530442 C8orf58Q8NAV2 365 aa14.24□□□□□ -0.13
CAPN1-218ENST00000530442 CDCA7LQ96GN5 454 aa14.24□□□□□ -0.13
CAPN1-218ENST00000530442 MYH16Q9H6N6 1097 aa14.24□□□□□ -0.13
CAPN1-218ENST00000530442 RTCBQ9Y3I0 505 aaKnown RBP14.24□□□□□ -0.13
CAPN1-218ENST00000530442 LRP5O75197 1615 aa14.23□□□□□ -0.13
CAPN1-218ENST00000530442 NBPF26B4DH59 902 aa14.23□□□□□ -0.13
CAPN1-218ENST00000530442 E9PSI1 815 aa14.23□□□□□ -0.13
CAPN1-218ENST00000530442 CANXP27824 592 aaKnown RBP14.23□□□□□ -0.13
CAPN1-218ENST00000530442 SLFN5Q08AF3 891 aa14.23□□□□□ -0.13
CAPN1-218ENST00000530442 DUSP27Q5VZP5 1158 aa14.23□□□□□ -0.13
CAPN1-218ENST00000530442 NBPF10Q6P3W6 841 aaKnown RBP14.23□□□□□ -0.13
CAPN1-218ENST00000530442 NBPF15Q8N660 670 aa14.23□□□□□ -0.13
CAPN1-218ENST00000530442 TSPYL6Q8N831 410 aa14.23□□□□□ -0.13
CAPN1-218ENST00000530442 ADRA2BP18089 450 aa14.22□□□□□ -0.13
CAPN1-218ENST00000530442 EIF2S2P20042 333 aaKnown RBP14.22□□□□□ -0.13
CAPN1-218ENST00000530442 EIF5P55010 431 aaKnown RBP14.22□□□□□ -0.13
CAPN1-218ENST00000530442 ERBB4Q15303 1308 aa14.21□□□□□ -0.13
CAPN1-218ENST00000530442 ELL2O00472 640 aaPredicted RBP14.21□□□□□ -0.13
CAPN1-218ENST00000530442 IL6STP40189 918 aaPredicted RBP14.21□□□□□ -0.13
CAPN1-218ENST00000530442 EXOSC9Q06265 439 aaKnown RBP14.21□□□□□ -0.13
CAPN1-218ENST00000530442 HDGFL1Q5TGJ6 251 aa14.21□□□□□ -0.13
CAPN1-218ENST00000530442 FLAD1Q8NFF5 587 aa14.21□□□□□ -0.13
CAPN1-218ENST00000530442 NECTIN2Q92692 538 aa14.21□□□□□ -0.13
CAPN1-218ENST00000530442 ARHGEF1Q92888 912 aaKnown RBP14.21□□□□□ -0.13
CAPN1-218ENST00000530442 CACNA1FO60840 1977 aa14.21□□□□□ -0.13
CAPN1-218ENST00000530442 SRCAPQ6ZRS2 3230 aa14.2□□□□□ -0.14
CAPN1-218ENST00000530442 PDIA6Q15084 440 aa14.2□□□□□ -0.14
CAPN1-218ENST00000530442 PROSER3Q2NL68 480 aa14.2□□□□□ -0.14
CAPN1-218ENST00000530442 TWISTNBQ3B726 338 aaPredicted RBP14.2□□□□□ -0.14
CAPN1-218ENST00000530442 TRAPPC3LQ5T215 181 aa14.2□□□□□ -0.14
CAPN1-218ENST00000530442 LRP10Q7Z4F1 713 aa14.2□□□□□ -0.14
CAPN1-218ENST00000530442 TRMT2AQ8IZ69 625 aaKnown RBP14.2□□□□□ -0.14
CAPN1-218ENST00000530442 ZNF330Q9Y3S2 320 aaPredicted RBP14.2□□□□□ -0.14
CAPN1-218ENST00000530442 NUP98P52948 1817 aa14.2□□□□□ -0.14
CAPN1-218ENST00000530442 ANKRD36CQ5JPF3 1778 aa14.19□□□□□ -0.14
CAPN1-218ENST00000530442 ARFGEF2Q9Y6D5 1785 aa14.19□□□□□ -0.14
CAPN1-218ENST00000530442 USP42Q9H9J4 1324 aaKnown RBP14.19□□□□□ -0.14
CAPN1-218ENST00000530442 MSH5O43196 834 aa14.19□□□□□ -0.14
CAPN1-218ENST00000530442 ANXA1P04083 346 aa14.19□□□□□ -0.14
CAPN1-218ENST00000530442 CHPF2Q9P2E5 772 aa14.19□□□□□ -0.14
CAPN1-218ENST00000530442 ZBTB7AO95365 584 aa14.18□□□□□ -0.14
CAPN1-218ENST00000530442 MYL6BP14649 208 aa14.18□□□□□ -0.14
CAPN1-218ENST00000530442 SRP68Q9UHB9 627 aaKnown RBP14.18□□□□□ -0.14
CAPN1-218ENST00000530442 VAMP4O75379 141 aa14.17□□□□□ -0.14
CAPN1-218ENST00000530442 RFC4P35249 363 aa14.17□□□□□ -0.14
CAPN1-218ENST00000530442 MSL1Q68DK7 614 aa14.17□□□□□ -0.14
CAPN1-218ENST00000530442 SLC16A10Q8TF71 515 aa14.17□□□□□ -0.14
CAPN1-218ENST00000530442 DDX21Q9NR30 783 aaKnown RBP eCLIP14.17□□□□□ -0.14
CAPN1-218ENST00000530442 A0A087WZG4 1122 aa14.16□□□□□ -0.14
CAPN1-218ENST00000530442 GYS1P13807 737 aa14.16□□□□□ -0.14
CAPN1-218ENST00000530442 USPL1Q5W0Q7 1092 aa14.16□□□□□ -0.14
CAPN1-218ENST00000530442 MTFR1LQ9H019 292 aa14.16□□□□□ -0.14
CAPN1-218ENST00000530442 NARFQ9UHQ1 456 aa14.16□□□□□ -0.14
CAPN1-218ENST00000530442 TBC1D2BQ9UPU7 963 aa14.16□□□□□ -0.14
CAPN1-218ENST00000530442 NRXN2Q9P2S2 1712 aa14.15□□□□□ -0.14
CAPN1-218ENST00000530442 AFDNP55196 1824 aaKnown RBP14.15□□□□□ -0.14
CAPN1-218ENST00000530442 CAMTA2O94983 1202 aa14.15□□□□□ -0.14
CAPN1-218ENST00000530442 CCDC30Q5VVM6 783 aa14.15□□□□□ -0.14
CAPN1-218ENST00000530442 DZIP3Q86Y13 1208 aaKnown RBP14.15□□□□□ -0.14
CAPN1-218ENST00000530442 BCL2L12Q9HB09 334 aa14.15□□□□□ -0.14
CAPN1-218ENST00000530442 DBF4Q9UBU7 674 aaPredicted RBP14.15□□□□□ -0.14
CAPN1-218ENST00000530442 TCERG1O14776 1098 aaKnown RBP14.14□□□□□ -0.15
CAPN1-218ENST00000530442 TTLL7Q6ZT98 887 aa14.14□□□□□ -0.15
CAPN1-218ENST00000530442 YTHDC1Q96MU7 727 aaKnown RBP14.14□□□□□ -0.15
CAPN1-218ENST00000530442 SGIP1Q9BQI5 828 aa14.14□□□□□ -0.15
CAPN1-218ENST00000530442 ATF5Q9Y2D1 282 aaPredicted RBP14.14□□□□□ -0.15
CAPN1-218ENST00000530442 ZPR1O75312 459 aa14.13□□□□□ -0.15
CAPN1-218ENST00000530442 PTGER2P43116 358 aa14.13□□□□□ -0.15
CAPN1-218ENST00000530442 FKBP8Q14318 412 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms