RNA–Protein interactions for RNA: ENST00000529828.5

PTPRC-213, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 2,336 nt, Biotype non stop decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-213ENST00000529828 ATG3Q9NT62 314 aa4.94□□□□□ -1.62
PTPRC-213ENST00000529828 PKD1L3Q7Z443 1732 aa4.93□□□□□ -1.62
PTPRC-213ENST00000529828 TMF1P82094 1093 aa4.93□□□□□ -1.62
PTPRC-213ENST00000529828 TRAPPC3LQ5T215 181 aa4.93□□□□□ -1.62
PTPRC-213ENST00000529828 RBM46Q8TBY0 533 aaKnown RBP4.93□□□□□ -1.62
PTPRC-213ENST00000529828 ARHGEF1Q92888 912 aaKnown RBP4.93□□□□□ -1.62
PTPRC-213ENST00000529828 SLC4A9Q96Q91 983 aa4.93□□□□□ -1.62
PTPRC-213ENST00000529828 RRAGCQ9HB90 399 aa4.93□□□□□ -1.62
PTPRC-213ENST00000529828 CCDC87Q9NVE4 849 aa4.93□□□□□ -1.62
PTPRC-213ENST00000529828 RNF181Q9P0P0 153 aa4.93□□□□□ -1.62
PTPRC-213ENST00000529828 SPG7Q9UQ90 795 aa4.93□□□□□ -1.62
PTPRC-213ENST00000529828 RTCBQ9Y3I0 505 aaKnown RBP4.93□□□□□ -1.62
PTPRC-213ENST00000529828 GYS1P13807 737 aa4.92□□□□□ -1.62
PTPRC-213ENST00000529828 PHKG2P15735 406 aa4.92□□□□□ -1.62
PTPRC-213ENST00000529828 CHRNA5P30532 468 aa4.92□□□□□ -1.62
PTPRC-213ENST00000529828 TGFB2P61812 414 aa4.92□□□□□ -1.62
PTPRC-213ENST00000529828 NKX1-1Q15270 411 aaPredicted RBP4.92□□□□□ -1.62
PTPRC-213ENST00000529828 PUS7Q96PZ0 661 aaKnown RBP4.92□□□□□ -1.62
PTPRC-213ENST00000529828 EYA1Q99502 592 aa4.92□□□□□ -1.62
PTPRC-213ENST00000529828 SRP68Q9UHB9 627 aaKnown RBP4.92□□□□□ -1.62
PTPRC-213ENST00000529828 KDRP35968 1356 aa4.92□□□□□ -1.62
PTPRC-213ENST00000529828 C4AP0C0L4 1744 aa4.92□□□□□ -1.62
PTPRC-213ENST00000529828 KIF20BQ96Q89 1820 aa4.92□□□□□ -1.62
PTPRC-213ENST00000529828 KCNA3P22001 575 aa4.92□□□□□ -1.62
PTPRC-213ENST00000529828 RFC4P35249 363 aa4.92□□□□□ -1.62
PTPRC-213ENST00000529828 RASSF7Q02833 373 aa4.92□□□□□ -1.62
PTPRC-213ENST00000529828 PARP3Q9Y6F1 533 aa4.92□□□□□ -1.62
PTPRC-213ENST00000529828 KIF13BQ9NQT8 1826 aa4.92□□□□□ -1.62
PTPRC-213ENST00000529828 HMGB2P26583 209 aaKnown RBP4.91□□□□□ -1.62
PTPRC-213ENST00000529828 TNNT2P45379 298 aaPredicted RBP4.91□□□□□ -1.62
PTPRC-213ENST00000529828 DDR1Q08345 913 aa4.91□□□□□ -1.62
PTPRC-213ENST00000529828 IFNL2Q8IZJ0 200 aa4.91□□□□□ -1.62
PTPRC-213ENST00000529828 NLGN1Q8N2Q7 840 aa4.91□□□□□ -1.62
PTPRC-213ENST00000529828 JMYQ8N9B5 988 aa4.91□□□□□ -1.62
PTPRC-213ENST00000529828 CARD14Q9BXL6 1004 aa4.91□□□□□ -1.62
PTPRC-213ENST00000529828 PLEKHG2Q9H7P9 1386 aa4.91□□□□□ -1.62
PTPRC-213ENST00000529828 NCAPD2Q15021 1401 aa4.91□□□□□ -1.62
PTPRC-213ENST00000529828 PTCD1O75127 700 aaKnown RBP4.91□□□□□ -1.62
PTPRC-213ENST00000529828 HSPA1AP0DMV8 641 aaKnown RBP4.91□□□□□ -1.62
PTPRC-213ENST00000529828 HSPA1BP0DMV9 641 aaKnown RBP4.91□□□□□ -1.62
PTPRC-213ENST00000529828 FSTL1Q12841 308 aa4.91□□□□□ -1.62
PTPRC-213ENST00000529828 FKBP8Q14318 412 aa4.91□□□□□ -1.62
PTPRC-213ENST00000529828 DALRD3Q5D0E6 543 aaKnown RBP4.91□□□□□ -1.62
PTPRC-213ENST00000529828 DCAF5Q96JK2 942 aa4.91□□□□□ -1.62
PTPRC-213ENST00000529828 PIM2Q9P1W9 311 aa4.91□□□□□ -1.62
PTPRC-213ENST00000529828 KDM2BQ8NHM5 1336 aa4.91□□□□□ -1.62
PTPRC-213ENST00000529828 PRELPP51888 382 aa4.9□□□□□ -1.62
PTPRC-213ENST00000529828 KIF24Q5T7B8 1368 aa4.9□□□□□ -1.62
PTPRC-213ENST00000529828 TTLL13PA6NNM8 815 aa4.9□□□□□ -1.63
PTPRC-213ENST00000529828 RPS6KA4O75676 772 aa4.9□□□□□ -1.63
PTPRC-213ENST00000529828 EIF4A2Q14240 407 aaKnown RBP4.9□□□□□ -1.63
PTPRC-213ENST00000529828 SMC1BQ8NDV3 1235 aa4.9□□□□□ -1.63
PTPRC-213ENST00000529828 POLR3GLQ9BT43 218 aa4.9□□□□□ -1.63
PTPRC-213ENST00000529828 COLQQ9Y215 455 aaPredicted RBP4.9□□□□□ -1.63
PTPRC-213ENST00000529828 CNTNAP4Q9C0A0 1308 aa4.9□□□□□ -1.63
PTPRC-213ENST00000529828 BRCA1P38398 1863 aaKnown RBP4.9□□□□□ -1.63
PTPRC-213ENST00000529828 KDM6AO15550 1401 aaPredicted RBP4.89□□□□□ -1.63
PTPRC-213ENST00000529828 WASHC2AQ641Q2 1341 aa4.89□□□□□ -1.63
PTPRC-213ENST00000529828 CRKLP46109 303 aaKnown RBP4.89□□□□□ -1.63
PTPRC-213ENST00000529828 CABP4P57796 275 aa4.89□□□□□ -1.63
PTPRC-213ENST00000529828 POLKQ9UBT6 870 aa4.89□□□□□ -1.63
PTPRC-213ENST00000529828 COL5A3P25940 1745 aaPredicted RBP4.89□□□□□ -1.63
PTPRC-213ENST00000529828 USP42Q9H9J4 1324 aaKnown RBP4.89□□□□□ -1.63
PTPRC-213ENST00000529828 RC3H1Q5TC82 1133 aaKnown RBP4.89□□□□□ -1.63
PTPRC-213ENST00000529828 ZNF530Q6P9A1 599 aaPredicted RBP4.89□□□□□ -1.63
PTPRC-213ENST00000529828 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.89□□□□□ -1.63
PTPRC-213ENST00000529828 TNRC6CQ9HCJ0 1690 aaKnown RBP4.88□□□□□ -1.63
PTPRC-213ENST00000529828 MYH14Q7Z406 1995 aaKnown RBP4.88□□□□□ -1.63
PTPRC-213ENST00000529828 ARFGEF1Q9Y6D6 1849 aa4.88□□□□□ -1.63
PTPRC-213ENST00000529828 POLRMTO00411 1230 aaKnown RBP4.88□□□□□ -1.63
PTPRC-213ENST00000529828 PLCG2P16885 1265 aa4.88□□□□□ -1.63
PTPRC-213ENST00000529828 USPL1Q5W0Q7 1092 aa4.88□□□□□ -1.63
PTPRC-213ENST00000529828 AEBP1Q8IUX7 1158 aa4.88□□□□□ -1.63
PTPRC-213ENST00000529828 MKRN1Q9UHC7 482 aaKnown RBP4.88□□□□□ -1.63
PTPRC-213ENST00000529828 ANKRD26Q9UPS8 1709 aa4.88□□□□□ -1.63
PTPRC-213ENST00000529828 ERVV-2B6SEH9 535 aa4.88□□□□□ -1.63
PTPRC-213ENST00000529828 MAP3K13O43283 966 aa4.88□□□□□ -1.63
PTPRC-213ENST00000529828 CARMIL3Q8ND23 1372 aa4.87□□□□□ -1.63
PTPRC-213ENST00000529828 NFKBIEO00221 500 aa4.87□□□□□ -1.63
PTPRC-213ENST00000529828 VEGFAP15692 232 aaPredicted RBP4.87□□□□□ -1.63
PTPRC-213ENST00000529828 LMNB1P20700 586 aa4.87□□□□□ -1.63
PTPRC-213ENST00000529828 MTHFSP49914 203 aa4.87□□□□□ -1.63
PTPRC-213ENST00000529828 INTS5Q6P9B9 1019 aaKnown RBP4.87□□□□□ -1.63
PTPRC-213ENST00000529828 DNAJC10Q8IXB1 793 aa4.87□□□□□ -1.63
PTPRC-213ENST00000529828 CCDC24Q8N4L8 307 aa4.87□□□□□ -1.63
PTPRC-213ENST00000529828 NFATC2IPQ8NCF5 419 aa4.87□□□□□ -1.63
PTPRC-213ENST00000529828 TRIM35Q9UPQ4 493 aa4.87□□□□□ -1.63
PTPRC-213ENST00000529828 TJP1Q07157 1748 aa4.87□□□□□ -1.63
PTPRC-213ENST00000529828 GLTPD2A6NH11 291 aa4.86□□□□□ -1.63
PTPRC-213ENST00000529828 ZPR1O75312 459 aa4.86□□□□□ -1.63
PTPRC-213ENST00000529828 HSP90AB1P08238 724 aaKnown RBP4.86□□□□□ -1.63
PTPRC-213ENST00000529828 TM4SF1P30408 202 aa4.86□□□□□ -1.63
PTPRC-213ENST00000529828 NFIXQ14938 502 aa4.86□□□□□ -1.63
PTPRC-213ENST00000529828 PLEKHO1Q53GL0 409 aaPredicted RBP4.86□□□□□ -1.63
PTPRC-213ENST00000529828 BICDL1Q6ZP65 573 aa4.86□□□□□ -1.63
PTPRC-213ENST00000529828 C2CD5Q86YS7 1000 aa4.86□□□□□ -1.63
PTPRC-213ENST00000529828 TIAM2Q8IVF5 1701 aa4.86□□□□□ -1.63
PTPRC-213ENST00000529828 SBF1O95248 1867 aa4.86□□□□□ -1.63
PTPRC-213ENST00000529828 POTECB2RU33 542 aa4.86□□□□□ -1.63
PTPRC-213ENST00000529828 SLC39A6Q13433 755 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms