RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 SH3PXD2AQ5TCZ1 1133 aa8.92□□□□□ -0.98
CD44-230ENST00000528922 CHMP7Q8WUX9 453 aaPredicted RBP8.92□□□□□ -0.98
CD44-230ENST00000528922 CABP1Q9NZU7 370 aa8.92□□□□□ -0.98
CD44-230ENST00000528922 SSFA2P28290 1259 aa8.91□□□□□ -0.98
CD44-230ENST00000528922 NOS2P35228 1153 aa8.91□□□□□ -0.98
CD44-230ENST00000528922 PSMA6P60900 246 aaKnown RBP8.91□□□□□ -0.98
CD44-230ENST00000528922 WDR44Q5JSH3 913 aa8.91□□□□□ -0.98
CD44-230ENST00000528922 PHLDB3Q6NSJ2 640 aa8.91□□□□□ -0.98
CD44-230ENST00000528922 C2orf49Q9BVC5 232 aaPredicted RBP8.91□□□□□ -0.98
CD44-230ENST00000528922 CXXC1Q9P0U4 656 aaPredicted RBP8.91□□□□□ -0.98
CD44-230ENST00000528922 SENP3-EIF4A1A0A087X0R7 540 aa8.9□□□□□ -0.98
CD44-230ENST00000528922 EML1O00423 815 aa8.9□□□□□ -0.98
CD44-230ENST00000528922 PLA2G4AP47712 749 aa8.9□□□□□ -0.98
CD44-230ENST00000528922 PTSQ03393 145 aa8.9□□□□□ -0.98
CD44-230ENST00000528922 PDE4CQ08493 712 aa8.9□□□□□ -0.98
CD44-230ENST00000528922 FKBP5Q13451 457 aaPredicted RBP8.9□□□□□ -0.98
CD44-230ENST00000528922 POTEAQ6S8J7 498 aa8.9□□□□□ -0.98
CD44-230ENST00000528922 L3MBTL2Q969R5 705 aa8.9□□□□□ -0.98
CD44-230ENST00000528922 SERTM1A2A2V5 107 aa8.89□□□□□ -0.99
CD44-230ENST00000528922 SCNN1AP37088 669 aa8.89□□□□□ -0.99
CD44-230ENST00000528922 HOMEZQ8IX15 550 aa8.89□□□□□ -0.99
CD44-230ENST00000528922 STAG2Q8N3U4 1231 aa8.89□□□□□ -0.99
CD44-230ENST00000528922 TRAIPQ9BWF2 469 aa8.89□□□□□ -0.99
CD44-230ENST00000528922 TIMMDC1Q9NPL8 285 aa8.89□□□□□ -0.99
CD44-230ENST00000528922 CAPN12Q6ZSI9 719 aa8.88□□□□□ -0.99
CD44-230ENST00000528922 ZNF232Q9UNY5 417 aa8.88□□□□□ -0.99
CD44-230ENST00000528922 SLC35F4A4IF30 521 aa8.87□□□□□ -0.99
CD44-230ENST00000528922 FOXO3O43524 673 aa8.87□□□□□ -0.99
CD44-230ENST00000528922 TXLNAP40222 546 aa8.87□□□□□ -0.99
CD44-230ENST00000528922 ZNF787Q6DD87 383 aa8.87□□□□□ -0.99
CD44-230ENST00000528922 AIDAQ96BJ3 306 aa8.87□□□□□ -0.99
CD44-230ENST00000528922 HCN4Q9Y3Q4 1203 aa8.87□□□□□ -0.99
CD44-230ENST00000528922 HIRAP54198 1017 aaPredicted RBP8.86□□□□□ -0.99
CD44-230ENST00000528922 PDIA4P13667 645 aaKnown RBP8.85□□□□□ -0.99
CD44-230ENST00000528922 MSX1P28360 303 aa8.85□□□□□ -0.99
CD44-230ENST00000528922 C1orf216Q8TAB5 229 aa8.85□□□□□ -0.99
CD44-230ENST00000528922 C7orf43Q8WVR3 580 aa8.85□□□□□ -0.99
CD44-230ENST00000528922 MKNK1Q9BUB5 465 aa8.85□□□□□ -0.99
CD44-230ENST00000528922 CHMP3Q9Y3E7 222 aa8.85□□□□□ -0.99
CD44-230ENST00000528922 DYRK1BQ9Y463 629 aa8.85□□□□□ -0.99
CD44-230ENST00000528922 A0A1B0GTH6 734 aa8.84□□□□□ -0.99
CD44-230ENST00000528922 CCDC155Q8N6L0 562 aa8.84□□□□□ -0.99
CD44-230ENST00000528922 ATP4AP20648 1035 aa8.83□□□□□ -1
CD44-230ENST00000528922 ALDH16A1Q8IZ83 802 aa8.83□□□□□ -1
CD44-230ENST00000528922 KLRG1Q96E93 195 aa8.83□□□□□ -1
CD44-230ENST00000528922 GAS2L1Q99501 681 aaPredicted RBP8.83□□□□□ -1
CD44-230ENST00000528922 PHACTR1Q9C0D0 580 aa8.83□□□□□ -1
CD44-230ENST00000528922 SEPT3Q9UH03 358 aa8.83□□□□□ -1
CD44-230ENST00000528922 BRD1O95696 1058 aa8.82□□□□□ -1
CD44-230ENST00000528922 F11P03951 625 aa8.82□□□□□ -1
CD44-230ENST00000528922 NBPF1Q3BBV0 1214 aa8.82□□□□□ -1
CD44-230ENST00000528922 VTI1AQ96AJ9 217 aa8.82□□□□□ -1
CD44-230ENST00000528922 NGLY1Q96IV0 654 aa8.82□□□□□ -1
CD44-230ENST00000528922 GPAMQ9HCL2 828 aa8.82□□□□□ -1
CD44-230ENST00000528922 CUEDC1Q9NWM3 386 aaPredicted RBP8.82□□□□□ -1
CD44-230ENST00000528922 ZDHHC3Q9NYG2 299 aa8.82□□□□□ -1
CD44-230ENST00000528922 NAA30Q147X3 362 aaPredicted RBP8.81□□□□□ -1
CD44-230ENST00000528922 C1orf53Q5VUE5 145 aa8.81□□□□□ -1
CD44-230ENST00000528922 COL26A1Q96A83 441 aa8.81□□□□□ -1
CD44-230ENST00000528922 SAP130Q9H0E3 1048 aa8.81□□□□□ -1
CD44-230ENST00000528922 QTRT2Q9H974 415 aaKnown RBP8.81□□□□□ -1
CD44-230ENST00000528922 PPFIA3O75145 1194 aa8.8□□□□□ -1
CD44-230ENST00000528922 B4GALNT3Q6L9W6 998 aa8.8□□□□□ -1
CD44-230ENST00000528922 ZIC5Q96T25 663 aa8.8□□□□□ -1
CD44-230ENST00000528922 RUBCNLQ9H714 662 aa8.8□□□□□ -1
CD44-230ENST00000528922 PTCD1O75127 700 aaKnown RBP8.8□□□□□ -1
CD44-230ENST00000528922 THBS1P07996 1170 aa8.8□□□□□ -1
CD44-230ENST00000528922 TATP17735 454 aaPredicted RBP8.8□□□□□ -1
CD44-230ENST00000528922 COX20Q5RI15 118 aa8.8□□□□□ -1
CD44-230ENST00000528922 RIPOR1Q6ZS17 1223 aa8.8□□□□□ -1
CD44-230ENST00000528922 LRFN2Q9ULH4 789 aa8.8□□□□□ -1
CD44-230ENST00000528922 ITGA6P23229 1130 aa8.79□□□□□ -1
CD44-230ENST00000528922 DBN1Q16643 649 aa8.79□□□□□ -1
CD44-230ENST00000528922 TXNDC2Q86VQ3 553 aa8.79□□□□□ -1
CD44-230ENST00000528922 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.79□□□□□ -1
CD44-230ENST00000528922 ARID4AP29374 1257 aaPredicted RBP8.78□□□□□ -1
CD44-230ENST00000528922 VEGFBP49765 207 aa8.78□□□□□ -1
CD44-230ENST00000528922 RTN1Q16799 776 aa8.78□□□□□ -1
CD44-230ENST00000528922 ARSJQ5FYB0 599 aaPredicted RBP8.78□□□□□ -1
CD44-230ENST00000528922 RHPN1Q8TCX5 695 aa8.78□□□□□ -1
CD44-230ENST00000528922 MYO19Q96H55 970 aa8.78□□□□□ -1
CD44-230ENST00000528922 CRISPLD1Q9H336 500 aa8.78□□□□□ -1
CD44-230ENST00000528922 NXF1Q9UBU9 619 aaKnown RBP8.78□□□□□ -1
CD44-230ENST00000528922 A0A1W2PNR3 127 aa8.77□□□□□ -1.01
CD44-230ENST00000528922 C16orf46Q6P387 395 aa8.77□□□□□ -1.01
CD44-230ENST00000528922 BICDL1Q6ZP65 573 aa8.77□□□□□ -1.01
CD44-230ENST00000528922 GTF3C2Q8WUA4 911 aaPredicted RBP8.77□□□□□ -1.01
CD44-230ENST00000528922 KLK14Q9P0G3 267 aa8.77□□□□□ -1.01
CD44-230ENST00000528922 SERPINB4P48594 390 aa8.76□□□□□ -1.01
CD44-230ENST00000528922 AEBP1Q8IUX7 1158 aa8.76□□□□□ -1.01
CD44-230ENST00000528922 TRIM22Q8IYM9 498 aa8.76□□□□□ -1.01
CD44-230ENST00000528922 ZNF280CQ8ND82 737 aa8.76□□□□□ -1.01
CD44-230ENST00000528922 BCS1LQ9Y276 419 aa8.76□□□□□ -1.01
CD44-230ENST00000528922 TNFRSF10BO14763 440 aa8.75□□□□□ -1.01
CD44-230ENST00000528922 DGKZQ13574 1117 aa8.75□□□□□ -1.01
CD44-230ENST00000528922 UBAP2LQ14157 1087 aaKnown RBP8.75□□□□□ -1.01
CD44-230ENST00000528922 LRRC69Q6ZNQ3 347 aa8.75□□□□□ -1.01
CD44-230ENST00000528922 PGBD3Q8N328 593 aa8.75□□□□□ -1.01
CD44-230ENST00000528922 ZNF837Q96EG3 531 aaPredicted RBP8.75□□□□□ -1.01
CD44-230ENST00000528922 HSH2DQ96JZ2 352 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms