RNA–Protein interactions for RNA: ENST00000527046.5

NEDD8-205, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-205ENST00000527046 PDIA6Q15084 440 aa14.04□□□□□ -0.16
NEDD8-205ENST00000527046 RC3H1Q5TC82 1133 aaKnown RBP14.04□□□□□ -0.16
NEDD8-205ENST00000527046 NBPF14Q5TI25 921 aa14.04□□□□□ -0.16
NEDD8-205ENST00000527046 NBPF10Q6P3W6 841 aaKnown RBP14.04□□□□□ -0.16
NEDD8-205ENST00000527046 NBPF15Q8N660 670 aa14.04□□□□□ -0.16
NEDD8-205ENST00000527046 TUBGCP6Q96RT7 1819 aa14.04□□□□□ -0.16
NEDD8-205ENST00000527046 CRKLP46109 303 aaKnown RBP14.03□□□□□ -0.16
NEDD8-205ENST00000527046 SLC15A2Q16348 729 aa14.03□□□□□ -0.16
NEDD8-205ENST00000527046 DUSP27Q5VZP5 1158 aa14.03□□□□□ -0.16
NEDD8-205ENST00000527046 LRP10Q7Z4F1 713 aa14.03□□□□□ -0.16
NEDD8-205ENST00000527046 PDGFDQ9GZP0 370 aaPredicted RBP14.03□□□□□ -0.16
NEDD8-205ENST00000527046 UBR3Q6ZT12 1888 aa14.03□□□□□ -0.16
NEDD8-205ENST00000527046 ZBED9Q6R2W3 1325 aa14.02□□□□□ -0.17
NEDD8-205ENST00000527046 CNTNAP4Q9C0A0 1308 aa14.02□□□□□ -0.17
NEDD8-205ENST00000527046 ELL2O00472 640 aaPredicted RBP14.02□□□□□ -0.17
NEDD8-205ENST00000527046 VAMP4O75379 141 aa14.02□□□□□ -0.17
NEDD8-205ENST00000527046 EXOSC9Q06265 439 aaKnown RBP14.02□□□□□ -0.17
NEDD8-205ENST00000527046 TEX13AQ9BXU3 409 aaPredicted RBP14.01□□□□□ -0.17
NEDD8-205ENST00000527046 ZBTB1Q9Y2K1 713 aa14.01□□□□□ -0.17
NEDD8-205ENST00000527046 PNPLA7Q6ZV29 1317 aa14□□□□□ -0.17
NEDD8-205ENST00000527046 E9PSI1 815 aa14□□□□□ -0.17
NEDD8-205ENST00000527046 RPS6KA4O75676 772 aa14□□□□□ -0.17
NEDD8-205ENST00000527046 PIP4K2AP48426 406 aaPredicted RBP14□□□□□ -0.17
NEDD8-205ENST00000527046 EIF5P55010 431 aaKnown RBP14□□□□□ -0.17
NEDD8-205ENST00000527046 CCDC87Q9NVE4 849 aa14□□□□□ -0.17
NEDD8-205ENST00000527046 LAMB4A4D0S4 1761 aa13.99□□□□□ -0.17
NEDD8-205ENST00000527046 HOXB7P09629 217 aa13.99□□□□□ -0.17
NEDD8-205ENST00000527046 PROSER3Q2NL68 480 aa13.99□□□□□ -0.17
NEDD8-205ENST00000527046 COL23A1Q86Y22 540 aaPredicted RBP13.99□□□□□ -0.17
NEDD8-205ENST00000527046 QSER1Q2KHR3 1735 aa13.98□□□□□ -0.17
NEDD8-205ENST00000527046 SOS1Q07889 1333 aaPredicted RBP13.98□□□□□ -0.17
NEDD8-205ENST00000527046 STARD3NLO95772 234 aa13.98□□□□□ -0.17
NEDD8-205ENST00000527046 R3HDM1Q15032 1099 aaKnown RBP13.98□□□□□ -0.17
NEDD8-205ENST00000527046 GNPATO15228 680 aa13.97□□□□□ -0.17
NEDD8-205ENST00000527046 ANXA1P04083 346 aa13.97□□□□□ -0.17
NEDD8-205ENST00000527046 EIF2S2P20042 333 aaKnown RBP13.97□□□□□ -0.17
NEDD8-205ENST00000527046 CANXP27824 592 aaKnown RBP13.97□□□□□ -0.17
NEDD8-205ENST00000527046 NECTIN2Q92692 538 aa13.97□□□□□ -0.17
NEDD8-205ENST00000527046 ARHGEF1Q92888 912 aaKnown RBP13.97□□□□□ -0.17
NEDD8-205ENST00000527046 MYH16Q9H6N6 1097 aa13.97□□□□□ -0.17
NEDD8-205ENST00000527046 STK32BQ9NY57 414 aa13.97□□□□□ -0.17
NEDD8-205ENST00000527046 CASZ1Q86V15 1759 aa13.96□□□□□ -0.17
NEDD8-205ENST00000527046 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.96□□□□□ -0.17
NEDD8-205ENST00000527046 PSDA5PKW4 1024 aaPredicted RBP13.96□□□□□ -0.17
NEDD8-205ENST00000527046 TWISTNBQ3B726 338 aaPredicted RBP13.96□□□□□ -0.17
NEDD8-205ENST00000527046 IL6STP40189 918 aaPredicted RBP13.95□□□□□ -0.18
NEDD8-205ENST00000527046 BCL2L12Q9HB09 334 aa13.95□□□□□ -0.18
NEDD8-205ENST00000527046 TFCP2L1Q9NZI6 479 aa13.95□□□□□ -0.18
NEDD8-205ENST00000527046 TCERG1O14776 1098 aaKnown RBP13.94□□□□□ -0.18
NEDD8-205ENST00000527046 SSFA2P28290 1259 aa13.94□□□□□ -0.18
NEDD8-205ENST00000527046 AK7Q96M32 723 aa13.94□□□□□ -0.18
NEDD8-205ENST00000527046 DDX21Q9NR30 783 aaKnown RBP eCLIP13.94□□□□□ -0.18
NEDD8-205ENST00000527046 CHPF2Q9P2E5 772 aa13.94□□□□□ -0.18
NEDD8-205ENST00000527046 RTCBQ9Y3I0 505 aaKnown RBP13.94□□□□□ -0.18
NEDD8-205ENST00000527046 ERBB4Q15303 1308 aa13.93□□□□□ -0.18
NEDD8-205ENST00000527046 C4AP0C0L4 1744 aa13.93□□□□□ -0.18
NEDD8-205ENST00000527046 TRAPPC3LQ5T215 181 aa13.93□□□□□ -0.18
NEDD8-205ENST00000527046 HDGFL1Q5TGJ6 251 aa13.93□□□□□ -0.18
NEDD8-205ENST00000527046 TTLL7Q6ZT98 887 aa13.93□□□□□ -0.18
NEDD8-205ENST00000527046 G2E3Q7L622 706 aa13.93□□□□□ -0.18
NEDD8-205ENST00000527046 YTHDC1Q96MU7 727 aaKnown RBP13.93□□□□□ -0.18
NEDD8-205ENST00000527046 PHAXQ9H814 394 aaKnown RBP13.93□□□□□ -0.18
NEDD8-205ENST00000527046 SRP68Q9UHB9 627 aaKnown RBP13.93□□□□□ -0.18
NEDD8-205ENST00000527046 COL24A1Q17RW2 1714 aa13.93□□□□□ -0.18
NEDD8-205ENST00000527046 PHF14O94880 888 aa13.92□□□□□ -0.18
NEDD8-205ENST00000527046 HMGB2P26583 209 aaKnown RBP13.92□□□□□ -0.18
NEDD8-205ENST00000527046 TBC1D2BQ9UPU7 963 aa13.92□□□□□ -0.18
NEDD8-205ENST00000527046 CAMTA2O94983 1202 aa13.91□□□□□ -0.18
NEDD8-205ENST00000527046 MYL6BP14649 208 aa13.91□□□□□ -0.18
NEDD8-205ENST00000527046 ADRA2BP18089 450 aa13.91□□□□□ -0.18
NEDD8-205ENST00000527046 DBF4Q9UBU7 674 aaPredicted RBP13.91□□□□□ -0.18
NEDD8-205ENST00000527046 NARFQ9UHQ1 456 aa13.91□□□□□ -0.18
NEDD8-205ENST00000527046 COL15A1P39059 1388 aa13.91□□□□□ -0.18
NEDD8-205ENST00000527046 GYS1P13807 737 aa13.9□□□□□ -0.18
NEDD8-205ENST00000527046 HLFQ16534 295 aa13.9□□□□□ -0.18
NEDD8-205ENST00000527046 CCDC30Q5VVM6 783 aa13.9□□□□□ -0.18
NEDD8-205ENST00000527046 COPS6Q7L5N1 327 aa13.9□□□□□ -0.18
NEDD8-205ENST00000527046 MRPL50Q8N5N7 158 aaKnown RBP13.9□□□□□ -0.18
NEDD8-205ENST00000527046 FLAD1Q8NFF5 587 aa13.9□□□□□ -0.18
NEDD8-205ENST00000527046 SGIP1Q9BQI5 828 aa13.9□□□□□ -0.18
NEDD8-205ENST00000527046 USP42Q9H9J4 1324 aaKnown RBP13.9□□□□□ -0.19
NEDD8-205ENST00000527046 SLC4A2P04920 1241 aa13.89□□□□□ -0.19
NEDD8-205ENST00000527046 USPL1Q5W0Q7 1092 aa13.89□□□□□ -0.19
NEDD8-205ENST00000527046 XAGE3Q8WTP9 111 aa13.89□□□□□ -0.19
NEDD8-205ENST00000527046 SSH1Q8WYL5 1049 aa13.89□□□□□ -0.19
NEDD8-205ENST00000527046 TM4SF1P30408 202 aa13.88□□□□□ -0.19
NEDD8-205ENST00000527046 PTGER2P43116 358 aa13.88□□□□□ -0.19
NEDD8-205ENST00000527046 RARSP54136 660 aaKnown RBP13.88□□□□□ -0.19
NEDD8-205ENST00000527046 FKBP8Q14318 412 aa13.88□□□□□ -0.19
NEDD8-205ENST00000527046 CACNA1FO60840 1977 aa13.87□□□□□ -0.19
NEDD8-205ENST00000527046 BCORQ6W2J9 1755 aa13.87□□□□□ -0.19
NEDD8-205ENST00000527046 ZBTB7AO95365 584 aa13.87□□□□□ -0.19
NEDD8-205ENST00000527046 CT47B1P0C2W7 299 aaPredicted RBP13.87□□□□□ -0.19
NEDD8-205ENST00000527046 RFC4P35249 363 aa13.87□□□□□ -0.19
NEDD8-205ENST00000527046 DZIP3Q86Y13 1208 aaKnown RBP13.87□□□□□ -0.19
NEDD8-205ENST00000527046 SLC16A10Q8TF71 515 aa13.87□□□□□ -0.19
NEDD8-205ENST00000527046 HYPKQ9NX55 129 aa13.87□□□□□ -0.19
NEDD8-205ENST00000527046 NUP98P52948 1817 aa13.86□□□□□ -0.19
NEDD8-205ENST00000527046 A0A087WZG4 1122 aa13.86□□□□□ -0.19
NEDD8-205ENST00000527046 ERVV-1B6SEH8 477 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms