RNA–Protein interactions for RNA: ENST00000522556.1

CLK4-211, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 1,249 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-211ENST00000522556 POLD1P28340 1107 aa23.58■■□□□ 1.37
CLK4-211ENST00000522556 TAF7Q15545 349 aaPredicted RBP23.58■■□□□ 1.37
CLK4-211ENST00000522556 KLHL34Q8N239 644 aa23.58■■□□□ 1.37
CLK4-211ENST00000522556 FMNL2Q96PY5 1086 aa23.58■■□□□ 1.37
CLK4-211ENST00000522556 LAMB4A4D0S4 1761 aa23.57■■□□□ 1.36
CLK4-211ENST00000522556 SENP3-EIF4A1A0A087X0R7 540 aa23.57■■□□□ 1.36
CLK4-211ENST00000522556 SYT17Q9BSW7 474 aa23.57■■□□□ 1.36
CLK4-211ENST00000522556 TRIM35Q9UPQ4 493 aa23.56■■□□□ 1.36
CLK4-211ENST00000522556 COL15A1P39059 1388 aa23.55■■□□□ 1.36
CLK4-211ENST00000522556 GYS1P13807 737 aa23.55■■□□□ 1.36
CLK4-211ENST00000522556 ADRA2BP18089 450 aa23.55■■□□□ 1.36
CLK4-211ENST00000522556 CANXP27824 592 aaKnown RBP23.55■■□□□ 1.36
CLK4-211ENST00000522556 PIP4K2AP48426 406 aaPredicted RBP23.55■■□□□ 1.36
CLK4-211ENST00000522556 USP16Q9Y5T5 823 aa23.55■■□□□ 1.36
CLK4-211ENST00000522556 USP42Q9H9J4 1324 aaKnown RBP23.55■■□□□ 1.36
CLK4-211ENST00000522556 RFC4P35249 363 aa23.54■■□□□ 1.36
CLK4-211ENST00000522556 NLGN2Q8NFZ4 835 aa23.54■■□□□ 1.36
CLK4-211ENST00000522556 MRS2Q9HD23 443 aa23.54■■□□□ 1.36
CLK4-211ENST00000522556 A1BGP04217 495 aa23.53■■□□□ 1.36
CLK4-211ENST00000522556 SCN7AQ01118 1682 aa23.52■■□□□ 1.36
CLK4-211ENST00000522556 APAF1O14727 1248 aa23.52■■□□□ 1.36
CLK4-211ENST00000522556 STARD3NLO95772 234 aa23.51■■□□□ 1.35
CLK4-211ENST00000522556 MMP10P09238 476 aa23.51■■□□□ 1.35
CLK4-211ENST00000522556 FKBP8Q14318 412 aa23.51■■□□□ 1.35
CLK4-211ENST00000522556 PNISRQ8TF01 805 aaKnown RBP23.51■■□□□ 1.35
CLK4-211ENST00000522556 EIF4A1P60842 406 aaKnown RBP23.5■■□□□ 1.35
CLK4-211ENST00000522556 EIF5P55010 431 aaKnown RBP23.49■■□□□ 1.35
CLK4-211ENST00000522556 USPL1Q5W0Q7 1092 aa23.49■■□□□ 1.35
CLK4-211ENST00000522556 ZNF330Q9Y3S2 320 aaPredicted RBP23.49■■□□□ 1.35
CLK4-211ENST00000522556 KIAA1551Q9HCM1 1747 aa23.49■■□□□ 1.35
CLK4-211ENST00000522556 BCORQ6W2J9 1755 aa23.48■■□□□ 1.35
CLK4-211ENST00000522556 SNRPA1P09661 255 aaKnown RBP23.48■■□□□ 1.35
CLK4-211ENST00000522556 LMOD3Q0VAK6 560 aa23.48■■□□□ 1.35
CLK4-211ENST00000522556 BCL2L12Q9HB09 334 aa23.48■■□□□ 1.35
CLK4-211ENST00000522556 DDR1Q08345 913 aa23.47■■□□□ 1.35
CLK4-211ENST00000522556 TEX13AQ9BXU3 409 aaPredicted RBP23.47■■□□□ 1.35
CLK4-211ENST00000522556 TSPYL4Q9UJ04 414 aa23.47■■□□□ 1.35
CLK4-211ENST00000522556 NBPF26B4DH59 902 aa23.46■■□□□ 1.35
CLK4-211ENST00000522556 NBPF10Q6P3W6 841 aaKnown RBP23.46■■□□□ 1.35
CLK4-211ENST00000522556 NBPF15Q8N660 670 aa23.46■■□□□ 1.35
CLK4-211ENST00000522556 KIF13BQ9NQT8 1826 aa23.46■■□□□ 1.35
CLK4-211ENST00000522556 GIGYF1O75420 1035 aaPredicted RBP23.45■■□□□ 1.34
CLK4-211ENST00000522556 KRT24Q2M2I5 525 aa23.45■■□□□ 1.34
CLK4-211ENST00000522556 NLGN1Q8N2Q7 840 aa23.45■■□□□ 1.34
CLK4-211ENST00000522556 NARFQ9UHQ1 456 aa23.45■■□□□ 1.34
CLK4-211ENST00000522556 AFDNP55196 1824 aaKnown RBP23.45■■□□□ 1.34
CLK4-211ENST00000522556 TBC1D2BQ9UPU7 963 aa23.44■■□□□ 1.34
CLK4-211ENST00000522556 N4BP2Q86UW6 1770 aaPredicted RBP23.43■■□□□ 1.34
CLK4-211ENST00000522556 IL6STP40189 918 aaPredicted RBP23.43■■□□□ 1.34
CLK4-211ENST00000522556 LAS1LQ9Y4W2 734 aaKnown RBP23.43■■□□□ 1.34
CLK4-211ENST00000522556 C10orf71Q711Q0 1435 aa23.42■■□□□ 1.34
CLK4-211ENST00000522556 ZPR1O75312 459 aa23.42■■□□□ 1.34
CLK4-211ENST00000522556 WWC3Q9ULE0 1092 aa23.41■■□□□ 1.34
CLK4-211ENST00000522556 NRXN2Q9P2S2 1712 aa23.4■■□□□ 1.34
CLK4-211ENST00000522556 CHL1O00533 1208 aa23.4■■□□□ 1.34
CLK4-211ENST00000522556 NFIXQ14938 502 aa23.4■■□□□ 1.34
CLK4-211ENST00000522556 PXDNLA1KZ92 1463 aa23.39■■□□□ 1.34
CLK4-211ENST00000522556 POLRMTO00411 1230 aaKnown RBP23.39■■□□□ 1.33
CLK4-211ENST00000522556 CAMTA2O94983 1202 aa23.39■■□□□ 1.33
CLK4-211ENST00000522556 TM4SF1P30408 202 aa23.39■■□□□ 1.33
CLK4-211ENST00000522556 CD2APQ9Y5K6 639 aa23.39■■□□□ 1.33
CLK4-211ENST00000522556 TBC1D9BQ66K14 1250 aa23.37■■□□□ 1.33
CLK4-211ENST00000522556 BICDL1Q6ZP65 573 aa23.37■■□□□ 1.33
CLK4-211ENST00000522556 DZIP3Q86Y13 1208 aaKnown RBP23.37■■□□□ 1.33
CLK4-211ENST00000522556 PARP3Q9Y6F1 533 aa23.37■■□□□ 1.33
CLK4-211ENST00000522556 YBX3P16989 372 aaKnown RBP eCLIP23.36■■□□□ 1.33
CLK4-211ENST00000522556 PELP1Q8IZL8 1130 aaKnown RBP23.36■■□□□ 1.33
CLK4-211ENST00000522556 FAM9BQ8IZU0 186 aa23.36■■□□□ 1.33
CLK4-211ENST00000522556 MBIPQ9NS73 344 aa23.36■■□□□ 1.33
CLK4-211ENST00000522556 BABAM1Q9NWV8 329 aa23.36■■□□□ 1.33
CLK4-211ENST00000522556 A0A087WZG4 1122 aa23.35■■□□□ 1.33
CLK4-211ENST00000522556 ANXA1P04083 346 aa23.35■■□□□ 1.33
CLK4-211ENST00000522556 ZNF853P0CG23 659 aa23.35■■□□□ 1.33
CLK4-211ENST00000522556 PROSER3Q2NL68 480 aa23.35■■□□□ 1.33
CLK4-211ENST00000522556 NGEFQ8N5V2 710 aa23.35■■□□□ 1.33
CLK4-211ENST00000522556 NECTIN2Q92692 538 aa23.35■■□□□ 1.33
CLK4-211ENST00000522556 CARMIL3Q8ND23 1372 aa23.35■■□□□ 1.33
CLK4-211ENST00000522556 BRCA1P38398 1863 aaKnown RBP23.34■■□□□ 1.33
CLK4-211ENST00000522556 EIF2S2P20042 333 aaKnown RBP23.34■■□□□ 1.33
CLK4-211ENST00000522556 CFAP44Q96MT7 982 aa23.34■■□□□ 1.33
CLK4-211ENST00000522556 ANKRD31Q8N7Z5 1873 aa23.33■■□□□ 1.33
CLK4-211ENST00000522556 MYL6BP14649 208 aa23.33■■□□□ 1.33
CLK4-211ENST00000522556 SALL2Q9Y467 1007 aaPredicted RBP23.33■■□□□ 1.33
CLK4-211ENST00000522556 PDIA6Q15084 440 aa23.32■■□□□ 1.32
CLK4-211ENST00000522556 TTLL7Q6ZT98 887 aa23.32■■□□□ 1.32
CLK4-211ENST00000522556 LRP10Q7Z4F1 713 aa23.32■■□□□ 1.32
CLK4-211ENST00000522556 NUP98P52948 1817 aa23.31■■□□□ 1.32
CLK4-211ENST00000522556 GPR162Q16538 588 aa23.31■■□□□ 1.32
CLK4-211ENST00000522556 GOLGB1Q14789 3259 aaKnown RBP23.31■■□□□ 1.32
CLK4-211ENST00000522556 A0A0G2JLW4 131 aa23.3■■□□□ 1.32
CLK4-211ENST00000522556 SERPINB2P05120 415 aa23.3■■□□□ 1.32
CLK4-211ENST00000522556 HLFQ16534 295 aa23.3■■□□□ 1.32
CLK4-211ENST00000522556 WWC1Q8IX03 1113 aa23.3■■□□□ 1.32
CLK4-211ENST00000522556 CCDC24Q8N4L8 307 aa23.3■■□□□ 1.32
CLK4-211ENST00000522556 IFT57Q9NWB7 429 aa23.3■■□□□ 1.32
CLK4-211ENST00000522556 DPEP1P16444 411 aa23.29■■□□□ 1.32
CLK4-211ENST00000522556 COL11A2P13942 1736 aaPredicted RBP23.28■■□□□ 1.32
CLK4-211ENST00000522556 NPM2Q86SE8 214 aaKnown RBP23.28■■□□□ 1.32
CLK4-211ENST00000522556 TSR2Q969E8 191 aaKnown RBP23.28■■□□□ 1.32
CLK4-211ENST00000522556 CHRNA5P30532 468 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms