RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 TOP2AP11388 1531 aaKnown RBP12.06□□□□□ -0.48
SDCBP-208ENST00000520228 ATAD2Q6PL18 1390 aa12.06□□□□□ -0.48
SDCBP-208ENST00000520228 CADPSQ9ULU8 1353 aa12.06□□□□□ -0.48
SDCBP-208ENST00000520228 ATP2B4P23634 1241 aa12.06□□□□□ -0.48
SDCBP-208ENST00000520228 SLC27A3Q5K4L6 730 aa12.06□□□□□ -0.48
SDCBP-208ENST00000520228 TBCELQ5QJ74 424 aa12.05□□□□□ -0.48
SDCBP-208ENST00000520228 STAG2Q8N3U4 1231 aa12.05□□□□□ -0.48
SDCBP-208ENST00000520228 RHBDD1Q8TEB9 315 aa12.05□□□□□ -0.48
SDCBP-208ENST00000520228 SCG3Q8WXD2 468 aaKnown RBP12.05□□□□□ -0.48
SDCBP-208ENST00000520228 DNMT3LQ9UJW3 386 aa12.05□□□□□ -0.48
SDCBP-208ENST00000520228 LYSMD3Q7Z3D4 306 aa12.04□□□□□ -0.48
SDCBP-208ENST00000520228 NBPF15Q8N660 670 aa12.04□□□□□ -0.48
SDCBP-208ENST00000520228 C1orf216Q8TAB5 229 aa12.04□□□□□ -0.48
SDCBP-208ENST00000520228 TEAD4Q15561 434 aa12.03□□□□□ -0.48
SDCBP-208ENST00000520228 TMEM214Q6NUQ4 689 aaKnown RBP12.03□□□□□ -0.48
SDCBP-208ENST00000520228 ZDHHC1Q8WTX9 485 aa12.03□□□□□ -0.48
SDCBP-208ENST00000520228 FOXO3O43524 673 aa12.02□□□□□ -0.49
SDCBP-208ENST00000520228 BRD1O95696 1058 aa12.02□□□□□ -0.49
SDCBP-208ENST00000520228 PSMA6P60900 246 aaKnown RBP12.02□□□□□ -0.49
SDCBP-208ENST00000520228 C4orf17Q53FE4 359 aa12.02□□□□□ -0.49
SDCBP-208ENST00000520228 TAS1R3Q7RTX0 852 aa12.02□□□□□ -0.49
SDCBP-208ENST00000520228 SENP2Q9HC62 589 aa12.02□□□□□ -0.49
SDCBP-208ENST00000520228 GMPR2Q9P2T1 348 aaKnown RBP12.02□□□□□ -0.49
SDCBP-208ENST00000520228 FIGNL2A6NMB9 653 aa12.01□□□□□ -0.49
SDCBP-208ENST00000520228 PPP1R12BO60237 982 aaPredicted RBP12.01□□□□□ -0.49
SDCBP-208ENST00000520228 FKBP5Q13451 457 aaPredicted RBP12.01□□□□□ -0.49
SDCBP-208ENST00000520228 WDR44Q5JSH3 913 aa12.01□□□□□ -0.49
SDCBP-208ENST00000520228 NBPF10Q6P3W6 841 aaKnown RBP12.01□□□□□ -0.49
SDCBP-208ENST00000520228 PRICKLE2Q7Z3G6 844 aa12.01□□□□□ -0.49
SDCBP-208ENST00000520228 KIFC2Q96AC6 838 aa12.01□□□□□ -0.49
SDCBP-208ENST00000520228 TRIM47Q96LD4 638 aa12.01□□□□□ -0.49
SDCBP-208ENST00000520228 C2orf49Q9BVC5 232 aaPredicted RBP12.01□□□□□ -0.49
SDCBP-208ENST00000520228 NIFKQ9BYG3 293 aaKnown RBP12.01□□□□□ -0.49
SDCBP-208ENST00000520228 PDS5BQ9NTI5 1447 aa12.01□□□□□ -0.49
SDCBP-208ENST00000520228 LAMC3Q9Y6N6 1575 aa12.01□□□□□ -0.49
SDCBP-208ENST00000520228 EML1O00423 815 aa12□□□□□ -0.49
SDCBP-208ENST00000520228 HIRAP54198 1017 aaPredicted RBP12□□□□□ -0.49
SDCBP-208ENST00000520228 POU4F2Q12837 409 aa12□□□□□ -0.49
SDCBP-208ENST00000520228 GNASQ5JWF2 1037 aa12□□□□□ -0.49
SDCBP-208ENST00000520228 GTF2E1P29083 439 aaPredicted RBP11.99□□□□□ -0.49
SDCBP-208ENST00000520228 NOS2P35228 1153 aa11.99□□□□□ -0.49
SDCBP-208ENST00000520228 B4GALNT3Q6L9W6 998 aa11.99□□□□□ -0.49
SDCBP-208ENST00000520228 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.98□□□□□ -0.49
SDCBP-208ENST00000520228 L3MBTL2Q969R5 705 aa11.98□□□□□ -0.49
SDCBP-208ENST00000520228 COL26A1Q96A83 441 aa11.98□□□□□ -0.49
SDCBP-208ENST00000520228 CABP1Q9NZU7 370 aa11.98□□□□□ -0.49
SDCBP-208ENST00000520228 CCDC88BA6NC98 1476 aa11.97□□□□□ -0.49
SDCBP-208ENST00000520228 SERTM1A2A2V5 107 aa11.97□□□□□ -0.49
SDCBP-208ENST00000520228 SH3PXD2AQ5TCZ1 1133 aa11.97□□□□□ -0.49
SDCBP-208ENST00000520228 CHMP7Q8WUX9 453 aaPredicted RBP11.97□□□□□ -0.49
SDCBP-208ENST00000520228 SOBPA7XYQ1 873 aa11.96□□□□□ -0.49
SDCBP-208ENST00000520228 MAN1A2O60476 641 aa11.96□□□□□ -0.49
SDCBP-208ENST00000520228 RHOQP17081 205 aa11.96□□□□□ -0.49
SDCBP-208ENST00000520228 SCNN1AP37088 669 aa11.96□□□□□ -0.49
SDCBP-208ENST00000520228 PARP3Q9Y6F1 533 aa11.96□□□□□ -0.49
SDCBP-208ENST00000520228 CFTRP13569 1480 aa11.95□□□□□ -0.5
SDCBP-208ENST00000520228 SNRPBP14678 240 aaKnown RBP11.95□□□□□ -0.5
SDCBP-208ENST00000520228 CAPN12Q6ZSI9 719 aa11.95□□□□□ -0.5
SDCBP-208ENST00000520228 SENP3-EIF4A1A0A087X0R7 540 aa11.94□□□□□ -0.5
SDCBP-208ENST00000520228 POTECB2RU33 542 aa11.94□□□□□ -0.5
SDCBP-208ENST00000520228 PHKA2P46019 1235 aa11.94□□□□□ -0.5
SDCBP-208ENST00000520228 PLA2G4AP47712 749 aa11.94□□□□□ -0.5
SDCBP-208ENST00000520228 TXNDC2Q86VQ3 553 aa11.94□□□□□ -0.5
SDCBP-208ENST00000520228 KCTD17Q8N5Z5 321 aa11.93□□□□□ -0.5
SDCBP-208ENST00000520228 C7orf43Q8WVR3 580 aa11.93□□□□□ -0.5
SDCBP-208ENST00000520228 CHMP3Q9Y3E7 222 aa11.93□□□□□ -0.5
SDCBP-208ENST00000520228 PTCD1O75127 700 aaKnown RBP11.92□□□□□ -0.5
SDCBP-208ENST00000520228 TXLNAP40222 546 aa11.92□□□□□ -0.5
SDCBP-208ENST00000520228 KCNA1Q09470 495 aa11.92□□□□□ -0.5
SDCBP-208ENST00000520228 MKNK1Q9BUB5 465 aa11.92□□□□□ -0.5
SDCBP-208ENST00000520228 TIMMDC1Q9NPL8 285 aa11.92□□□□□ -0.5
SDCBP-208ENST00000520228 ZDHHC3Q9NYG2 299 aa11.92□□□□□ -0.5
SDCBP-208ENST00000520228 ZNF232Q9UNY5 417 aa11.92□□□□□ -0.5
SDCBP-208ENST00000520228 GNEQ9Y223 722 aaKnown RBP11.92□□□□□ -0.5
SDCBP-208ENST00000520228 DYRK1BQ9Y463 629 aa11.91□□□□□ -0.5
SDCBP-208ENST00000520228 CUX2O14529 1486 aa11.9□□□□□ -0.5
SDCBP-208ENST00000520228 A0A1B0GTH6 734 aa11.9□□□□□ -0.5
SDCBP-208ENST00000520228 C11orf95C9JLR9 678 aaPredicted RBP11.9□□□□□ -0.5
SDCBP-208ENST00000520228 ATP4AP20648 1035 aa11.9□□□□□ -0.5
SDCBP-208ENST00000520228 ARID4AP29374 1257 aaPredicted RBP11.9□□□□□ -0.5
SDCBP-208ENST00000520228 PTSQ03393 145 aa11.9□□□□□ -0.5
SDCBP-208ENST00000520228 C1orf53Q5VUE5 145 aa11.9□□□□□ -0.5
SDCBP-208ENST00000520228 QTRT2Q9H974 415 aaKnown RBP11.9□□□□□ -0.5
SDCBP-208ENST00000520228 SEPT3Q9UH03 358 aa11.9□□□□□ -0.5
SDCBP-208ENST00000520228 HCN4Q9Y3Q4 1203 aa11.9□□□□□ -0.5
SDCBP-208ENST00000520228 FANCD2Q9BXW9 1451 aa11.89□□□□□ -0.51
SDCBP-208ENST00000520228 SLC35F4A4IF30 521 aa11.89□□□□□ -0.51
SDCBP-208ENST00000520228 ALDH16A1Q8IZ83 802 aa11.89□□□□□ -0.51
SDCBP-208ENST00000520228 MYO19Q96H55 970 aa11.89□□□□□ -0.51
SDCBP-208ENST00000520228 MSX1P28360 303 aa11.88□□□□□ -0.51
SDCBP-208ENST00000520228 NBPF1Q3BBV0 1214 aa11.88□□□□□ -0.51
SDCBP-208ENST00000520228 AEBP1Q8IUX7 1158 aa11.88□□□□□ -0.51
SDCBP-208ENST00000520228 VTI1AQ96AJ9 217 aa11.88□□□□□ -0.51
SDCBP-208ENST00000520228 PHACTR1Q9C0D0 580 aa11.88□□□□□ -0.51
SDCBP-208ENST00000520228 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.88□□□□□ -0.51
SDCBP-208ENST00000520228 AIDAQ96BJ3 306 aa11.87□□□□□ -0.51
SDCBP-208ENST00000520228 CEP164Q9UPV0 1460 aa11.87□□□□□ -0.51
SDCBP-208ENST00000520228 NAA30Q147X3 362 aaPredicted RBP11.86□□□□□ -0.51
SDCBP-208ENST00000520228 COX20Q5RI15 118 aa11.86□□□□□ -0.51
SDCBP-208ENST00000520228 SAP130Q9H0E3 1048 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms