RNA–Protein interactions for RNA: ENST00000514773.1

PCDH1-207, Transcript of protocadherin 1, humanhuman

TSL 4

Gene PCDH1, Length 553 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-207ENST00000514773 UBR3Q6ZT12 1888 aa23.41■■□□□ 1.34
PCDH1-207ENST00000514773 TUBGCP6Q96RT7 1819 aa23.4■■□□□ 1.34
PCDH1-207ENST00000514773 KDM3BQ7LBC6 1761 aa23.4■■□□□ 1.34
PCDH1-207ENST00000514773 CHL1O00533 1208 aa23.4■■□□□ 1.34
PCDH1-207ENST00000514773 EIF4A1P60842 406 aaKnown RBP23.4■■□□□ 1.34
PCDH1-207ENST00000514773 INTS5Q6P9B9 1019 aaKnown RBP23.4■■□□□ 1.34
PCDH1-207ENST00000514773 NPM2Q86SE8 214 aaKnown RBP23.4■■□□□ 1.34
PCDH1-207ENST00000514773 MIER1Q8N108 512 aa23.4■■□□□ 1.34
PCDH1-207ENST00000514773 GNAI1P63096 354 aa23.39■■□□□ 1.33
PCDH1-207ENST00000514773 IFT57Q9NWB7 429 aa23.39■■□□□ 1.33
PCDH1-207ENST00000514773 RFC4P35249 363 aa23.38■■□□□ 1.33
PCDH1-207ENST00000514773 WWC1Q8IX03 1113 aa23.37■■□□□ 1.33
PCDH1-207ENST00000514773 ATF5Q9Y2D1 282 aaPredicted RBP23.37■■□□□ 1.33
PCDH1-207ENST00000514773 LRP5O75197 1615 aa23.37■■□□□ 1.33
PCDH1-207ENST00000514773 MYH14Q7Z406 1995 aaKnown RBP23.36■■□□□ 1.33
PCDH1-207ENST00000514773 GIGYF1O75420 1035 aaPredicted RBP23.36■■□□□ 1.33
PCDH1-207ENST00000514773 POLD1P28340 1107 aa23.36■■□□□ 1.33
PCDH1-207ENST00000514773 ARHGEF1Q92888 912 aaKnown RBP23.36■■□□□ 1.33
PCDH1-207ENST00000514773 A0A087WZG4 1122 aa23.35■■□□□ 1.33
PCDH1-207ENST00000514773 CANXP27824 592 aaKnown RBP23.35■■□□□ 1.33
PCDH1-207ENST00000514773 AMIGO3Q86WK7 504 aa23.35■■□□□ 1.33
PCDH1-207ENST00000514773 ZBTB1Q9Y2K1 713 aa23.35■■□□□ 1.33
PCDH1-207ENST00000514773 USP16Q9Y5T5 823 aa23.35■■□□□ 1.33
PCDH1-207ENST00000514773 SOS1Q07889 1333 aaPredicted RBP23.34■■□□□ 1.33
PCDH1-207ENST00000514773 ZNF853P0CG23 659 aa23.34■■□□□ 1.33
PCDH1-207ENST00000514773 PPP1R1BQ9UD71 204 aaPredicted RBP23.34■■□□□ 1.33
PCDH1-207ENST00000514773 IL16Q14005 1332 aa23.33■■□□□ 1.33
PCDH1-207ENST00000514773 IL6STP40189 918 aaPredicted RBP23.33■■□□□ 1.33
PCDH1-207ENST00000514773 WDR63Q8IWG1 891 aa23.33■■□□□ 1.33
PCDH1-207ENST00000514773 ZPR1O75312 459 aa23.32■■□□□ 1.32
PCDH1-207ENST00000514773 SMIM5Q71RC9 77 aa23.32■■□□□ 1.32
PCDH1-207ENST00000514773 SALL2Q9Y467 1007 aaPredicted RBP23.32■■□□□ 1.32
PCDH1-207ENST00000514773 COL15A1P39059 1388 aa23.31■■□□□ 1.32
PCDH1-207ENST00000514773 PRAMEF22A3QJZ6 481 aa23.31■■□□□ 1.32
PCDH1-207ENST00000514773 A1BGP04217 495 aa23.31■■□□□ 1.32
PCDH1-207ENST00000514773 EIF5P55010 431 aaKnown RBP23.31■■□□□ 1.32
PCDH1-207ENST00000514773 NLGN1Q8N2Q7 840 aa23.31■■□□□ 1.32
PCDH1-207ENST00000514773 CHMP4AQ9BY43 222 aa23.31■■□□□ 1.32
PCDH1-207ENST00000514773 MBIPQ9NS73 344 aa23.31■■□□□ 1.32
PCDH1-207ENST00000514773 SENP3-EIF4A1A0A087X0R7 540 aa23.3■■□□□ 1.32
PCDH1-207ENST00000514773 HOXB7P09629 217 aa23.3■■□□□ 1.32
PCDH1-207ENST00000514773 PTGER2P43116 358 aa23.3■■□□□ 1.32
PCDH1-207ENST00000514773 ZNF330Q9Y3S2 320 aaPredicted RBP23.29■■□□□ 1.32
PCDH1-207ENST00000514773 ERBB4Q15303 1308 aa23.29■■□□□ 1.32
PCDH1-207ENST00000514773 LAMB4A4D0S4 1761 aa23.28■■□□□ 1.32
PCDH1-207ENST00000514773 NARFQ9UHQ1 456 aa23.28■■□□□ 1.32
PCDH1-207ENST00000514773 USP42Q9H9J4 1324 aaKnown RBP23.28■■□□□ 1.32
PCDH1-207ENST00000514773 MSL1Q68DK7 614 aa23.27■■□□□ 1.32
PCDH1-207ENST00000514773 ARXQ96QS3 562 aa23.27■■□□□ 1.32
PCDH1-207ENST00000514773 SGIP1Q9BQI5 828 aa23.27■■□□□ 1.32
PCDH1-207ENST00000514773 GYS1P13807 737 aa23.26■■□□□ 1.31
PCDH1-207ENST00000514773 EIF2S2P20042 333 aaKnown RBP23.25■■□□□ 1.31
PCDH1-207ENST00000514773 MYH16Q9H6N6 1097 aa23.24■■□□□ 1.31
PCDH1-207ENST00000514773 C4AP0C0L4 1744 aa23.24■■□□□ 1.31
PCDH1-207ENST00000514773 COL24A1Q17RW2 1714 aa23.24■■□□□ 1.31
PCDH1-207ENST00000514773 DUSP27Q5VZP5 1158 aa23.23■■□□□ 1.31
PCDH1-207ENST00000514773 USPL1Q5W0Q7 1092 aa23.23■■□□□ 1.31
PCDH1-207ENST00000514773 SRP68Q9UHB9 627 aaKnown RBP23.23■■□□□ 1.31
PCDH1-207ENST00000514773 NBPF26B4DH59 902 aa23.22■■□□□ 1.31
PCDH1-207ENST00000514773 NBPF10Q6P3W6 841 aaKnown RBP23.22■■□□□ 1.31
PCDH1-207ENST00000514773 DZIP3Q86Y13 1208 aaKnown RBP23.22■■□□□ 1.31
PCDH1-207ENST00000514773 NBPF15Q8N660 670 aa23.22■■□□□ 1.31
PCDH1-207ENST00000514773 PIP4K2AP48426 406 aaPredicted RBP23.21■■□□□ 1.31
PCDH1-207ENST00000514773 GOLGA2Q08379 1002 aa23.21■■□□□ 1.31
PCDH1-207ENST00000514773 HDGFL1Q5TGJ6 251 aa23.21■■□□□ 1.31
PCDH1-207ENST00000514773 TSR2Q969E8 191 aaKnown RBP23.21■■□□□ 1.31
PCDH1-207ENST00000514773 TBC1D2BQ9UPU7 963 aa23.21■■□□□ 1.31
PCDH1-207ENST00000514773 RGL2O15211 777 aa23.2■■□□□ 1.3
PCDH1-207ENST00000514773 MMP10P09238 476 aa23.2■■□□□ 1.3
PCDH1-207ENST00000514773 KRT24Q2M2I5 525 aa23.2■■□□□ 1.3
PCDH1-207ENST00000514773 ZNF652Q9Y2D9 606 aa23.2■■□□□ 1.3
PCDH1-207ENST00000514773 PARP3Q9Y6F1 533 aa23.2■■□□□ 1.3
PCDH1-207ENST00000514773 ZNF521Q96K83 1311 aa23.19■■□□□ 1.3
PCDH1-207ENST00000514773 MYL6BP14649 208 aa23.19■■□□□ 1.3
PCDH1-207ENST00000514773 FKBP8Q14318 412 aa23.19■■□□□ 1.3
PCDH1-207ENST00000514773 DBF4Q9UBU7 674 aaPredicted RBP23.19■■□□□ 1.3
PCDH1-207ENST00000514773 FANCIQ9NVI1 1328 aa23.18■■□□□ 1.3
PCDH1-207ENST00000514773 CLEC4GQ6UXB4 293 aa23.18■■□□□ 1.3
PCDH1-207ENST00000514773 KIF6Q6ZMV9 814 aa23.18■■□□□ 1.3
PCDH1-207ENST00000514773 DDX21Q9NR30 783 aaKnown RBP eCLIP23.18■■□□□ 1.3
PCDH1-207ENST00000514773 C8orf58Q8NAV2 365 aa23.17■■□□□ 1.3
PCDH1-207ENST00000514773 NECTIN2Q92692 538 aa23.17■■□□□ 1.3
PCDH1-207ENST00000514773 ELL2O00472 640 aaPredicted RBP23.16■■□□□ 1.3
PCDH1-207ENST00000514773 CAMTA2O94983 1202 aa23.16■■□□□ 1.3
PCDH1-207ENST00000514773 E9PSI1 815 aa23.15■■□□□ 1.3
PCDH1-207ENST00000514773 PDIA6Q15084 440 aa23.15■■□□□ 1.3
PCDH1-207ENST00000514773 CCDC30Q5VVM6 783 aa23.15■■□□□ 1.3
PCDH1-207ENST00000514773 FHDC1Q9C0D6 1143 aaPredicted RBP23.15■■□□□ 1.3
PCDH1-207ENST00000514773 HYPKQ9NX55 129 aa23.15■■□□□ 1.3
PCDH1-207ENST00000514773 ERVV-1B6SEH8 477 aa23.14■■□□□ 1.29
PCDH1-207ENST00000514773 TM4SF1P30408 202 aa23.14■■□□□ 1.29
PCDH1-207ENST00000514773 TWISTNBQ3B726 338 aaPredicted RBP23.14■■□□□ 1.29
PCDH1-207ENST00000514773 KLHL34Q8N239 644 aa23.14■■□□□ 1.29
PCDH1-207ENST00000514773 CHPF2Q9P2E5 772 aa23.14■■□□□ 1.29
PCDH1-207ENST00000514773 CD2APQ9Y5K6 639 aa23.14■■□□□ 1.29
PCDH1-207ENST00000514773 BCL2L12Q9HB09 334 aa23.13■■□□□ 1.29
PCDH1-207ENST00000514773 SCN7AQ01118 1682 aa23.13■■□□□ 1.29
PCDH1-207ENST00000514773 NFIXQ14938 502 aa23.12■■□□□ 1.29
PCDH1-207ENST00000514773 SETDB2Q96T68 719 aa23.12■■□□□ 1.29
PCDH1-207ENST00000514773 SYT17Q9BSW7 474 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms