RNA–Protein interactions for RNA: ENST00000514610.1

HMGCS1-207, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-207ENST00000514610 ARID4AP29374 1257 aaPredicted RBP9.38□□□□□ -0.91
HMGCS1-207ENST00000514610 SERPINB4P48594 390 aa9.38□□□□□ -0.91
HMGCS1-207ENST00000514610 SCARF1Q14162 830 aa9.38□□□□□ -0.91
HMGCS1-207ENST00000514610 TEAD4Q15561 434 aa9.38□□□□□ -0.91
HMGCS1-207ENST00000514610 C4orf17Q53FE4 359 aa9.38□□□□□ -0.91
HMGCS1-207ENST00000514610 TMEM214Q6NUQ4 689 aaKnown RBP9.38□□□□□ -0.91
HMGCS1-207ENST00000514610 STAG2Q8N3U4 1231 aa9.38□□□□□ -0.91
HMGCS1-207ENST00000514610 NBPF15Q8N660 670 aa9.38□□□□□ -0.91
HMGCS1-207ENST00000514610 RHBDD1Q8TEB9 315 aa9.38□□□□□ -0.91
HMGCS1-207ENST00000514610 ATP13A2Q9NQ11 1180 aa9.38□□□□□ -0.91
HMGCS1-207ENST00000514610 CABP1Q9NZU7 370 aa9.38□□□□□ -0.91
HMGCS1-207ENST00000514610 TTLL8A6PVC2 850 aa9.37□□□□□ -0.91
HMGCS1-207ENST00000514610 SPATA31C2B4DYI2 1134 aa9.37□□□□□ -0.91
HMGCS1-207ENST00000514610 ZNF775Q96BV0 537 aaPredicted RBP9.37□□□□□ -0.91
HMGCS1-207ENST00000514610 FIGNL2A6NMB9 653 aa9.36□□□□□ -0.91
HMGCS1-207ENST00000514610 PATL2C9JE40 543 aaKnown RBP9.36□□□□□ -0.91
HMGCS1-207ENST00000514610 NOS2P35228 1153 aa9.36□□□□□ -0.91
HMGCS1-207ENST00000514610 PRICKLE2Q7Z3G6 844 aa9.36□□□□□ -0.91
HMGCS1-207ENST00000514610 L3MBTL2Q969R5 705 aa9.36□□□□□ -0.91
HMGCS1-207ENST00000514610 COL26A1Q96A83 441 aa9.36□□□□□ -0.91
HMGCS1-207ENST00000514610 NIFKQ9BYG3 293 aaKnown RBP9.36□□□□□ -0.91
HMGCS1-207ENST00000514610 GZF1Q9H116 711 aaPredicted RBP9.36□□□□□ -0.91
HMGCS1-207ENST00000514610 SERTM1A2A2V5 107 aa9.35□□□□□ -0.91
HMGCS1-207ENST00000514610 PLA2G4AP47712 749 aa9.35□□□□□ -0.91
HMGCS1-207ENST00000514610 POU4F2Q12837 409 aa9.35□□□□□ -0.91
HMGCS1-207ENST00000514610 NAA30Q147X3 362 aaPredicted RBP9.35□□□□□ -0.91
HMGCS1-207ENST00000514610 GNASQ5JWF2 1037 aa9.35□□□□□ -0.91
HMGCS1-207ENST00000514610 CCER1Q8TC90 406 aaPredicted RBP9.35□□□□□ -0.91
HMGCS1-207ENST00000514610 DNMT3LQ9UJW3 386 aa9.35□□□□□ -0.91
HMGCS1-207ENST00000514610 POTECB2RU33 542 aa9.34□□□□□ -0.91
HMGCS1-207ENST00000514610 PTCD1O75127 700 aaKnown RBP9.34□□□□□ -0.91
HMGCS1-207ENST00000514610 RHOQP17081 205 aa9.34□□□□□ -0.91
HMGCS1-207ENST00000514610 PHKA2P46019 1235 aa9.34□□□□□ -0.91
HMGCS1-207ENST00000514610 HIRAP54198 1017 aaPredicted RBP9.34□□□□□ -0.91
HMGCS1-207ENST00000514610 NBPF10Q6P3W6 841 aaKnown RBP9.34□□□□□ -0.91
HMGCS1-207ENST00000514610 LYSMD3Q7Z3D4 306 aa9.34□□□□□ -0.91
HMGCS1-207ENST00000514610 GTF3C2Q8WUA4 911 aaPredicted RBP9.34□□□□□ -0.91
HMGCS1-207ENST00000514610 SAP130Q9H0E3 1048 aa9.34□□□□□ -0.91
HMGCS1-207ENST00000514610 ZNF232Q9UNY5 417 aa9.34□□□□□ -0.91
HMGCS1-207ENST00000514610 HCN4Q9Y3Q4 1203 aa9.34□□□□□ -0.91
HMGCS1-207ENST00000514610 GTF2E1P29083 439 aaPredicted RBP9.33□□□□□ -0.92
HMGCS1-207ENST00000514610 TXLNAP40222 546 aa9.33□□□□□ -0.92
HMGCS1-207ENST00000514610 ZNF211Q13398 564 aaPredicted RBP9.33□□□□□ -0.92
HMGCS1-207ENST00000514610 VTI1AQ96AJ9 217 aa9.33□□□□□ -0.92
HMGCS1-207ENST00000514610 QTRT2Q9H974 415 aaKnown RBP9.33□□□□□ -0.92
HMGCS1-207ENST00000514610 DNMT3AQ9Y6K1 912 aaPredicted RBP9.33□□□□□ -0.92
HMGCS1-207ENST00000514610 SOBPA7XYQ1 873 aa9.32□□□□□ -0.92
HMGCS1-207ENST00000514610 NGLY1Q96IV0 654 aa9.32□□□□□ -0.92
HMGCS1-207ENST00000514610 ANO2Q9NQ90 1003 aa9.32□□□□□ -0.92
HMGCS1-207ENST00000514610 PODXL2Q9NZ53 605 aa9.32□□□□□ -0.92
HMGCS1-207ENST00000514610 ABL1P00519 1130 aa9.31□□□□□ -0.92
HMGCS1-207ENST00000514610 MTMR3Q13615 1198 aa9.31□□□□□ -0.92
HMGCS1-207ENST00000514610 COX20Q5RI15 118 aa9.31□□□□□ -0.92
HMGCS1-207ENST00000514610 ALDH16A1Q8IZ83 802 aa9.31□□□□□ -0.92
HMGCS1-207ENST00000514610 KLRG1Q96E93 195 aa9.31□□□□□ -0.92
HMGCS1-207ENST00000514610 PHACTR1Q9C0D0 580 aa9.31□□□□□ -0.92
HMGCS1-207ENST00000514610 CHMP3Q9Y3E7 222 aa9.31□□□□□ -0.92
HMGCS1-207ENST00000514610 SOWAHDA6NJG2 315 aa9.3□□□□□ -0.92
HMGCS1-207ENST00000514610 C7orf43Q8WVR3 580 aa9.3□□□□□ -0.92
HMGCS1-207ENST00000514610 LRFN2Q9ULH4 789 aa9.3□□□□□ -0.92
HMGCS1-207ENST00000514610 MTMR7Q9Y216 660 aa9.3□□□□□ -0.92
HMGCS1-207ENST00000514610 TNFRSF10BO14763 440 aa9.29□□□□□ -0.92
HMGCS1-207ENST00000514610 WDR44Q5JSH3 913 aa9.29□□□□□ -0.92
HMGCS1-207ENST00000514610 C16orf46Q6P387 395 aa9.29□□□□□ -0.92
HMGCS1-207ENST00000514610 MYO19Q96H55 970 aa9.29□□□□□ -0.92
HMGCS1-207ENST00000514610 EGFL7Q9UHF1 273 aa9.29□□□□□ -0.92
HMGCS1-207ENST00000514610 ATP4AP20648 1035 aa9.28□□□□□ -0.92
HMGCS1-207ENST00000514610 FAM26DQ5JW98 314 aa9.28□□□□□ -0.92
HMGCS1-207ENST00000514610 HELQQ8TDG4 1101 aa9.28□□□□□ -0.92
HMGCS1-207ENST00000514610 AIDAQ96BJ3 306 aa9.28□□□□□ -0.92
HMGCS1-207ENST00000514610 GMPR2Q9P2T1 348 aaKnown RBP9.28□□□□□ -0.92
HMGCS1-207ENST00000514610 SENP3-EIF4A1A0A087X0R7 540 aa9.27□□□□□ -0.93
HMGCS1-207ENST00000514610 H3BRB1 525 aa9.27□□□□□ -0.93
HMGCS1-207ENST00000514610 MAN1A2O60476 641 aa9.27□□□□□ -0.93
HMGCS1-207ENST00000514610 ICMTO60725 284 aa9.27□□□□□ -0.93
HMGCS1-207ENST00000514610 ECM1Q16610 540 aa9.27□□□□□ -0.93
HMGCS1-207ENST00000514610 C1orf53Q5VUE5 145 aa9.27□□□□□ -0.93
HMGCS1-207ENST00000514610 SND1Q7KZF4 910 aaKnown RBP eCLIP9.27□□□□□ -0.932e-18■■■■□ 19.6
HMGCS1-207ENST00000514610 TUT1Q9H6E5 874 aaKnown RBP9.27□□□□□ -0.93
HMGCS1-207ENST00000514610 TIMMDC1Q9NPL8 285 aa9.27□□□□□ -0.93
HMGCS1-207ENST00000514610 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.27□□□□□ -0.93
HMGCS1-207ENST00000514610 RTN1Q16799 776 aa9.26□□□□□ -0.93
HMGCS1-207ENST00000514610 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.26□□□□□ -0.931e-11■□□□□ 10.8
HMGCS1-207ENST00000514610 ZDHHC3Q9NYG2 299 aa9.26□□□□□ -0.93
HMGCS1-207ENST00000514610 MSX1P28360 303 aa9.25□□□□□ -0.93
HMGCS1-207ENST00000514610 FKBP4Q02790 459 aaKnown RBP eCLIP9.25□□□□□ -0.93
HMGCS1-207ENST00000514610 DGKZQ13574 1117 aa9.25□□□□□ -0.93
HMGCS1-207ENST00000514610 NBPF1Q3BBV0 1214 aa9.25□□□□□ -0.93
HMGCS1-207ENST00000514610 TRIM47Q96LD4 638 aa9.25□□□□□ -0.93
HMGCS1-207ENST00000514610 KLK14Q9P0G3 267 aa9.25□□□□□ -0.93
HMGCS1-207ENST00000514610 A0A1B0GTH6 734 aa9.24□□□□□ -0.93
HMGCS1-207ENST00000514610 SNRPBP14678 240 aaKnown RBP9.24□□□□□ -0.93
HMGCS1-207ENST00000514610 RHPN1Q8TCX5 695 aa9.24□□□□□ -0.93
HMGCS1-207ENST00000514610 BCS1LQ9Y276 419 aa9.24□□□□□ -0.93
HMGCS1-207ENST00000514610 NPR3P17342 541 aa9.23□□□□□ -0.93
HMGCS1-207ENST00000514610 MPSTP25325 297 aa9.23□□□□□ -0.93
HMGCS1-207ENST00000514610 SF3B2Q13435 895 aaKnown RBP9.23□□□□□ -0.93
HMGCS1-207ENST00000514610 TMCO4Q5TGY1 634 aa9.23□□□□□ -0.93
HMGCS1-207ENST00000514610 GLYCTKQ8IVS8 523 aa9.23□□□□□ -0.93
HMGCS1-207ENST00000514610 SENP2Q9HC62 589 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms