RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-209ENST00000514142 CDK19Q9BWU1 502 aa12.03□□□□□ -0.48
PDLIM3-209ENST00000514142 RRAGDQ9NQL2 400 aaPredicted RBP12.03□□□□□ -0.48
PDLIM3-209ENST00000514142 CCDC175P0C221 793 aa12.03□□□□□ -0.48
PDLIM3-209ENST00000514142 TMEM132AQ24JP5 1023 aa12.03□□□□□ -0.48
PDLIM3-209ENST00000514142 ZSCAN25Q6NSZ9 544 aa12.03□□□□□ -0.48
PDLIM3-209ENST00000514142 CCDC171Q6TFL3 1326 aa12.03□□□□□ -0.48
PDLIM3-209ENST00000514142 ZBTB9Q96C00 473 aa12.03□□□□□ -0.48
PDLIM3-209ENST00000514142 CEP126Q9P2H0 1117 aa12.03□□□□□ -0.48
PDLIM3-209ENST00000514142 DNAI1Q9UI46 699 aa12.03□□□□□ -0.48
PDLIM3-209ENST00000514142 ATP2C2O75185 946 aa12.02□□□□□ -0.48
PDLIM3-209ENST00000514142 CCT2P78371 535 aaKnown RBP12.02□□□□□ -0.48
PDLIM3-209ENST00000514142 CACNA2D4Q7Z3S7 1137 aa12.02□□□□□ -0.48
PDLIM3-209ENST00000514142 ARFGAP3Q9NP61 516 aa12.02□□□□□ -0.48
PDLIM3-209ENST00000514142 U3KPZ7 1027 aaPredicted RBP12.02□□□□□ -0.48
PDLIM3-209ENST00000514142 YEATS4O95619 227 aa12.02□□□□□ -0.49
PDLIM3-209ENST00000514142 ALDH1L2Q3SY69 923 aa12.02□□□□□ -0.49
PDLIM3-209ENST00000514142 KIF6Q6ZMV9 814 aa12.02□□□□□ -0.49
PDLIM3-209ENST00000514142 SPINK5Q9NQ38 1064 aaPredicted RBP12.02□□□□□ -0.49
PDLIM3-209ENST00000514142 MATR3P43243 847 aaKnown RBP eCLIP12.02□□□□□ -0.49
PDLIM3-209ENST00000514142 C8orf34Q49A92 452 aa12.02□□□□□ -0.49
PDLIM3-209ENST00000514142 FKBP15Q5T1M5 1219 aa12.02□□□□□ -0.49
PDLIM3-209ENST00000514142 MEX3CQ5U5Q3 659 aaKnown RBP12.02□□□□□ -0.49
PDLIM3-209ENST00000514142 TMX3Q96JJ7 454 aa12.02□□□□□ -0.49
PDLIM3-209ENST00000514142 F6X3S4 739 aa12.02□□□□□ -0.49
PDLIM3-209ENST00000514142 PPFIA3O75145 1194 aa12.02□□□□□ -0.49
PDLIM3-209ENST00000514142 SSR1P43307 286 aaKnown RBP12.02□□□□□ -0.49
PDLIM3-209ENST00000514142 ZNF530Q6P9A1 599 aaPredicted RBP12.02□□□□□ -0.49
PDLIM3-209ENST00000514142 CCDC82Q8N4S0 544 aa12.02□□□□□ -0.49
PDLIM3-209ENST00000514142 GOLGA6L9A6NEM1 432 aa12.01□□□□□ -0.49
PDLIM3-209ENST00000514142 USO1O60763 962 aaKnown RBP12.01□□□□□ -0.49
PDLIM3-209ENST00000514142 IDH1O75874 414 aaKnown RBP12.01□□□□□ -0.49
PDLIM3-209ENST00000514142 AFAP1Q8N556 730 aa12.01□□□□□ -0.49
PDLIM3-209ENST00000514142 SMC1AQ14683 1233 aaKnown RBP12.01□□□□□ -0.49
PDLIM3-209ENST00000514142 MCM10Q7L590 875 aa12.01□□□□□ -0.49
PDLIM3-209ENST00000514142 RBM42Q9BTD8 480 aaKnown RBP12.01□□□□□ -0.49
PDLIM3-209ENST00000514142 GPRASP1Q5JY77 1395 aa12.01□□□□□ -0.49
PDLIM3-209ENST00000514142 TSHZ3Q63HK5 1081 aa12.01□□□□□ -0.49
PDLIM3-209ENST00000514142 CCDC150Q8NCX0 1101 aa12.01□□□□□ -0.49
PDLIM3-209ENST00000514142 SRRTQ9BXP5 876 aaKnown RBP12.01□□□□□ -0.49
PDLIM3-209ENST00000514142 CNPY2Q9Y2B0 182 aa12.01□□□□□ -0.49
PDLIM3-209ENST00000514142 ANO6Q4KMQ2 910 aa12.01□□□□□ -0.49
PDLIM3-209ENST00000514142 MAATS1Q7Z4T9 603 aa12.01□□□□□ -0.49
PDLIM3-209ENST00000514142 PLCD3Q8N3E9 789 aa12.01□□□□□ -0.49
PDLIM3-209ENST00000514142 GNL3LQ9NVN8 582 aaKnown RBP12.01□□□□□ -0.49
PDLIM3-209ENST00000514142 SYNJ1O43426 1573 aa12.01□□□□□ -0.49
PDLIM3-209ENST00000514142 USP48Q86UV5 1035 aa12□□□□□ -0.49
PDLIM3-209ENST00000514142 NSD3Q9BZ95 1437 aa12□□□□□ -0.49
PDLIM3-209ENST00000514142 TDRD12Q587J7 1177 aaKnown RBP12□□□□□ -0.49
PDLIM3-209ENST00000514142 CCDC85AQ96PX6 553 aaPredicted RBP12□□□□□ -0.49
PDLIM3-209ENST00000514142 GAPVD1Q14C86 1478 aa12□□□□□ -0.49
PDLIM3-209ENST00000514142 UBE4AQ14139 1066 aa12□□□□□ -0.49
PDLIM3-209ENST00000514142 CCDC8Q9H0W5 538 aaPredicted RBP12□□□□□ -0.49
PDLIM3-209ENST00000514142 GSTTP1A0A1W2PQM5 241 aa11.99□□□□□ -0.49
PDLIM3-209ENST00000514142 SLU7O95391 586 aaKnown RBP11.99□□□□□ -0.49
PDLIM3-209ENST00000514142 IVLP07476 585 aa11.99□□□□□ -0.49
PDLIM3-209ENST00000514142 IRX3P78415 501 aaPredicted RBP11.99□□□□□ -0.49
PDLIM3-209ENST00000514142 TXNDC2Q86VQ3 553 aa11.99□□□□□ -0.49
PDLIM3-209ENST00000514142 ZSCAN22P10073 491 aaPredicted RBP11.99□□□□□ -0.49
PDLIM3-209ENST00000514142 CAPN2P17655 700 aa11.99□□□□□ -0.49
PDLIM3-209ENST00000514142 FAM200AQ8TCP9 573 aa11.99□□□□□ -0.49
PDLIM3-209ENST00000514142 JADE2Q9NQC1 790 aa11.99□□□□□ -0.49
PDLIM3-209ENST00000514142 PLEKHH2Q8IVE3 1493 aa11.99□□□□□ -0.49
PDLIM3-209ENST00000514142 NF2P35240 595 aa11.99□□□□□ -0.49
PDLIM3-209ENST00000514142 CAVIN2O95810 425 aa11.99□□□□□ -0.49
PDLIM3-209ENST00000514142 POLR3DP05423 398 aaPredicted RBP11.99□□□□□ -0.49
PDLIM3-209ENST00000514142 MICALL1Q8N3F8 863 aa11.99□□□□□ -0.49
PDLIM3-209ENST00000514142 CCDC91Q7Z6B0 441 aa11.98□□□□□ -0.49
PDLIM3-209ENST00000514142 AIDAQ96BJ3 306 aa11.98□□□□□ -0.49
PDLIM3-209ENST00000514142 PCDHB15Q9Y5E8 787 aa11.98□□□□□ -0.49
PDLIM3-209ENST00000514142 TTC22Q5TAA0 569 aa11.98□□□□□ -0.49
PDLIM3-209ENST00000514142 C10orf67Q8IYJ2 551 aa11.98□□□□□ -0.49
PDLIM3-209ENST00000514142 PAF1Q8N7H5 531 aa11.98□□□□□ -0.49
PDLIM3-209ENST00000514142 ATF3P18847 181 aa11.98□□□□□ -0.49
PDLIM3-209ENST00000514142 HSP90AA4PQ58FG1 418 aa11.98□□□□□ -0.49
PDLIM3-209ENST00000514142 BTBD11A6QL63 1104 aa11.97□□□□□ -0.49
PDLIM3-209ENST00000514142 GCOM1H8Y6P7 765 aaPredicted RBP11.97□□□□□ -0.49
PDLIM3-209ENST00000514142 MYZAPP0CAP1 466 aa11.97□□□□□ -0.49
PDLIM3-209ENST00000514142 HS1BP3Q53T59 392 aa11.97□□□□□ -0.49
PDLIM3-209ENST00000514142 AEBP2Q6ZN18 517 aaPredicted RBP11.97□□□□□ -0.49
PDLIM3-209ENST00000514142 SMAP1Q8IYB5 467 aaPredicted RBP11.97□□□□□ -0.49
PDLIM3-209ENST00000514142 MPHOSPH8Q99549 860 aa11.97□□□□□ -0.49
PDLIM3-209ENST00000514142 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.97□□□□□ -0.49
PDLIM3-209ENST00000514142 NAA15Q9BXJ9 866 aaKnown RBP11.97□□□□□ -0.49
PDLIM3-209ENST00000514142 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.97□□□□□ -0.49
PDLIM3-209ENST00000514142 POLA1P09884 1462 aaPredicted RBP11.97□□□□□ -0.49
PDLIM3-209ENST00000514142 NECAB1Q8N987 351 aa11.97□□□□□ -0.49
PDLIM3-209ENST00000514142 DNAJC25Q9H1X3 360 aa11.97□□□□□ -0.49
PDLIM3-209ENST00000514142 UBASH3AP57075 661 aa11.97□□□□□ -0.49
PDLIM3-209ENST00000514142 GOLGA8BA8MQT2 603 aa11.97□□□□□ -0.49
PDLIM3-209ENST00000514142 ALS2CR12Q96Q35 445 aa11.97□□□□□ -0.49
PDLIM3-209ENST00000514142 HMGB1P09429 215 aaKnown RBP11.96□□□□□ -0.49
PDLIM3-209ENST00000514142 DACT1Q9NYF0 836 aa11.96□□□□□ -0.49
PDLIM3-209ENST00000514142 TMCO5BA8MYB1 307 aa11.96□□□□□ -0.49
PDLIM3-209ENST00000514142 PTGS1P23219 599 aa11.96□□□□□ -0.49
PDLIM3-209ENST00000514142 LRP2BPQ9P2M1 347 aa11.96□□□□□ -0.49
PDLIM3-209ENST00000514142 AQRO60306 1485 aaKnown RBP eCLIP11.96□□□□□ -0.49
PDLIM3-209ENST00000514142 NESP48681 1621 aa11.96□□□□□ -0.49
PDLIM3-209ENST00000514142 CTAGE15A4D2H0 777 aa11.96□□□□□ -0.5
PDLIM3-209ENST00000514142 CTAGE8P0CG41 777 aa11.96□□□□□ -0.5
PDLIM3-209ENST00000514142 HSPA4P34932 840 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms