RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 MIER1Q8N108 512 aa11.9□□□□□ -0.5
NUP54-207ENST00000508583 CFAP44Q96MT7 982 aa11.9□□□□□ -0.5
NUP54-207ENST00000508583 SLC4A9Q96Q91 983 aa11.9□□□□□ -0.5
NUP54-207ENST00000508583 IL16Q14005 1332 aa11.89□□□□□ -0.51
NUP54-207ENST00000508583 UBR3Q6ZT12 1888 aa11.89□□□□□ -0.51
NUP54-207ENST00000508583 CRKLP46109 303 aaKnown RBP11.89□□□□□ -0.51
NUP54-207ENST00000508583 WWC1Q8IX03 1113 aa11.89□□□□□ -0.51
NUP54-207ENST00000508583 DNAJC10Q8IXB1 793 aa11.89□□□□□ -0.51
NUP54-207ENST00000508583 CCDC87Q9NVE4 849 aa11.89□□□□□ -0.51
NUP54-207ENST00000508583 LAS1LQ9Y4W2 734 aaKnown RBP11.89□□□□□ -0.51
NUP54-207ENST00000508583 CHL1O00533 1208 aa11.88□□□□□ -0.51
NUP54-207ENST00000508583 RPS6KA4O75676 772 aa11.88□□□□□ -0.51
NUP54-207ENST00000508583 CYP19A1P11511 503 aaPredicted RBP11.88□□□□□ -0.51
NUP54-207ENST00000508583 EIF4A1P60842 406 aaKnown RBP11.88□□□□□ -0.51
NUP54-207ENST00000508583 TRAPPC3LQ5T215 181 aa11.88□□□□□ -0.51
NUP54-207ENST00000508583 MTFR1LQ9H019 292 aa11.88□□□□□ -0.51
NUP54-207ENST00000508583 PNPLA7Q6ZV29 1317 aa11.87□□□□□ -0.51
NUP54-207ENST00000508583 SRCAPQ6ZRS2 3230 aa11.87□□□□□ -0.51
NUP54-207ENST00000508583 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.87□□□□□ -0.51
NUP54-207ENST00000508583 WDR63Q8IWG1 891 aa11.87□□□□□ -0.51
NUP54-207ENST00000508583 SPON1Q9HCB6 807 aa11.87□□□□□ -0.51
NUP54-207ENST00000508583 MIS18AQ9NYP9 233 aa11.87□□□□□ -0.51
NUP54-207ENST00000508583 LAMB4A4D0S4 1761 aa11.87□□□□□ -0.51
NUP54-207ENST00000508583 SOS1Q07889 1333 aaPredicted RBP11.86□□□□□ -0.51
NUP54-207ENST00000508583 A0A087WZG4 1122 aa11.86□□□□□ -0.51
NUP54-207ENST00000508583 KCNQ3O43525 872 aa11.86□□□□□ -0.51
NUP54-207ENST00000508583 GIGYF1O75420 1035 aaPredicted RBP11.86□□□□□ -0.51
NUP54-207ENST00000508583 PHF14O94880 888 aa11.86□□□□□ -0.51
NUP54-207ENST00000508583 HOXB7P09629 217 aa11.86□□□□□ -0.51
NUP54-207ENST00000508583 RFC4P35249 363 aa11.86□□□□□ -0.51
NUP54-207ENST00000508583 SMIM5Q71RC9 77 aa11.86□□□□□ -0.51
NUP54-207ENST00000508583 AMIGO3Q86WK7 504 aa11.86□□□□□ -0.51
NUP54-207ENST00000508583 C4AP0C0L4 1744 aa11.86□□□□□ -0.51
NUP54-207ENST00000508583 ERBB4Q15303 1308 aa11.86□□□□□ -0.51
NUP54-207ENST00000508583 MYH14Q7Z406 1995 aaKnown RBP11.85□□□□□ -0.51
NUP54-207ENST00000508583 ZBTB7AO95365 584 aa11.85□□□□□ -0.51
NUP54-207ENST00000508583 ZNF853P0CG23 659 aa11.85□□□□□ -0.51
NUP54-207ENST00000508583 POLD1P28340 1107 aa11.85□□□□□ -0.51
NUP54-207ENST00000508583 IL6STP40189 918 aaPredicted RBP11.85□□□□□ -0.51
NUP54-207ENST00000508583 COL23A1Q86Y22 540 aaPredicted RBP11.85□□□□□ -0.51
NUP54-207ENST00000508583 MYH16Q9H6N6 1097 aa11.85□□□□□ -0.51
NUP54-207ENST00000508583 SENP3-EIF4A1A0A087X0R7 540 aa11.84□□□□□ -0.51
NUP54-207ENST00000508583 ZPR1O75312 459 aa11.84□□□□□ -0.51
NUP54-207ENST00000508583 INTS5Q6P9B9 1019 aaKnown RBP11.84□□□□□ -0.51
NUP54-207ENST00000508583 MBIPQ9NS73 344 aa11.84□□□□□ -0.51
NUP54-207ENST00000508583 ZBTB1Q9Y2K1 713 aa11.84□□□□□ -0.51
NUP54-207ENST00000508583 COL15A1P39059 1388 aa11.83□□□□□ -0.52
NUP54-207ENST00000508583 CANXP27824 592 aaKnown RBP11.83□□□□□ -0.52
NUP54-207ENST00000508583 SALL2Q9Y467 1007 aaPredicted RBP11.83□□□□□ -0.52
NUP54-207ENST00000508583 COL24A1Q17RW2 1714 aa11.83□□□□□ -0.52
NUP54-207ENST00000508583 DSG3P32926 999 aa11.82□□□□□ -0.52
NUP54-207ENST00000508583 GOLGA2Q08379 1002 aa11.82□□□□□ -0.52
NUP54-207ENST00000508583 NLGN1Q8N2Q7 840 aa11.82□□□□□ -0.52
NUP54-207ENST00000508583 ARHGEF1Q92888 912 aaKnown RBP11.82□□□□□ -0.52
NUP54-207ENST00000508583 PPP1R1BQ9UD71 204 aaPredicted RBP11.82□□□□□ -0.52
NUP54-207ENST00000508583 ATF5Q9Y2D1 282 aaPredicted RBP11.82□□□□□ -0.52
NUP54-207ENST00000508583 USP16Q9Y5T5 823 aa11.82□□□□□ -0.52
NUP54-207ENST00000508583 RGL2O15211 777 aa11.81□□□□□ -0.52
NUP54-207ENST00000508583 A1BGP04217 495 aa11.81□□□□□ -0.52
NUP54-207ENST00000508583 EIF5P55010 431 aaKnown RBP11.81□□□□□ -0.52
NUP54-207ENST00000508583 ZNF652Q9Y2D9 606 aa11.81□□□□□ -0.52
NUP54-207ENST00000508583 ZNF330Q9Y3S2 320 aaPredicted RBP11.81□□□□□ -0.52
NUP54-207ENST00000508583 USP42Q9H9J4 1324 aaKnown RBP11.81□□□□□ -0.52
NUP54-207ENST00000508583 E9PSI1 815 aa11.8□□□□□ -0.52
NUP54-207ENST00000508583 EIF2S2P20042 333 aaKnown RBP11.8□□□□□ -0.52
NUP54-207ENST00000508583 HDGFL1Q5TGJ6 251 aa11.8□□□□□ -0.52
NUP54-207ENST00000508583 DUSP27Q5VZP5 1158 aa11.8□□□□□ -0.52
NUP54-207ENST00000508583 NARFQ9UHQ1 456 aa11.8□□□□□ -0.52
NUP54-207ENST00000508583 ZNF521Q96K83 1311 aa11.8□□□□□ -0.52
NUP54-207ENST00000508583 PRAMEF22A3QJZ6 481 aa11.79□□□□□ -0.52
NUP54-207ENST00000508583 PTGER2P43116 358 aa11.79□□□□□ -0.52
NUP54-207ENST00000508583 CCDC30Q5VVM6 783 aa11.79□□□□□ -0.52
NUP54-207ENST00000508583 MSL1Q68DK7 614 aa11.79□□□□□ -0.52
NUP54-207ENST00000508583 KIF6Q6ZMV9 814 aa11.79□□□□□ -0.52
NUP54-207ENST00000508583 ARXQ96QS3 562 aa11.79□□□□□ -0.52
NUP54-207ENST00000508583 DBF4Q9UBU7 674 aaPredicted RBP11.79□□□□□ -0.52
NUP54-207ENST00000508583 FANCIQ9NVI1 1328 aa11.79□□□□□ -0.52
NUP54-207ENST00000508583 GYS1P13807 737 aa11.78□□□□□ -0.52
NUP54-207ENST00000508583 DZIP3Q86Y13 1208 aaKnown RBP11.78□□□□□ -0.52
NUP54-207ENST00000508583 HNRNPUQ00839 825 aaKnown RBP eCLIP11.77□□□□□ -0.53
NUP54-207ENST00000508583 TWISTNBQ3B726 338 aaPredicted RBP11.77□□□□□ -0.53
NUP54-207ENST00000508583 CLEC4GQ6UXB4 293 aa11.77□□□□□ -0.53
NUP54-207ENST00000508583 TSR2Q969E8 191 aaKnown RBP11.77□□□□□ -0.53
NUP54-207ENST00000508583 SGIP1Q9BQI5 828 aa11.77□□□□□ -0.53
NUP54-207ENST00000508583 STK31Q9BXU1 1019 aa11.77□□□□□ -0.53
NUP54-207ENST00000508583 DDX21Q9NR30 783 aaKnown RBP eCLIP11.77□□□□□ -0.53
NUP54-207ENST00000508583 HYPKQ9NX55 129 aa11.77□□□□□ -0.53
NUP54-207ENST00000508583 PARP3Q9Y6F1 533 aa11.77□□□□□ -0.53
NUP54-207ENST00000508583 SCN7AQ01118 1682 aa11.77□□□□□ -0.53
NUP54-207ENST00000508583 NBPF26B4DH59 902 aa11.76□□□□□ -0.53
NUP54-207ENST00000508583 ERVV-1B6SEH8 477 aa11.76□□□□□ -0.53
NUP54-207ENST00000508583 MMP10P09238 476 aa11.76□□□□□ -0.53
NUP54-207ENST00000508583 MYL6BP14649 208 aa11.76□□□□□ -0.53
NUP54-207ENST00000508583 USPL1Q5W0Q7 1092 aa11.76□□□□□ -0.53
NUP54-207ENST00000508583 NBPF10Q6P3W6 841 aaKnown RBP11.76□□□□□ -0.53
NUP54-207ENST00000508583 NBPF15Q8N660 670 aa11.76□□□□□ -0.53
NUP54-207ENST00000508583 PIP4K2AP48426 406 aaPredicted RBP11.75□□□□□ -0.53
NUP54-207ENST00000508583 KRT24Q2M2I5 525 aa11.75□□□□□ -0.53
NUP54-207ENST00000508583 C8orf58Q8NAV2 365 aa11.75□□□□□ -0.53
NUP54-207ENST00000508583 ZNF428Q96B54 188 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms