RNA–Protein interactions for RNA: ENST00000508279.5

DDX41-209, Transcript of DEAD-box helicase 41, humanhuman

TSL 5

Gene DDX41, Length 776 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-209ENST00000508279 MMP10P09238 476 aa12.4□□□□□ -0.42
DDX41-209ENST00000508279 NEUROD2Q15784 382 aa12.4□□□□□ -0.42
DDX41-209ENST00000508279 VSIG10Q8N0Z9 540 aa12.4□□□□□ -0.42
DDX41-209ENST00000508279 WWC3Q9ULE0 1092 aa12.4□□□□□ -0.42
DDX41-209ENST00000508279 ZBTB1Q9Y2K1 713 aa12.4□□□□□ -0.42
DDX41-209ENST00000508279 HEG1Q9ULI3 1381 aa12.4□□□□□ -0.42
DDX41-209ENST00000508279 HTATSF1O43719 755 aaKnown RBP12.39□□□□□ -0.43
DDX41-209ENST00000508279 ZPR1O75312 459 aa12.39□□□□□ -0.43
DDX41-209ENST00000508279 GYS1P13807 737 aa12.39□□□□□ -0.43
DDX41-209ENST00000508279 RRP7AQ9Y3A4 280 aaKnown RBP12.39□□□□□ -0.43
DDX41-209ENST00000508279 SOS1Q07889 1333 aaPredicted RBP12.38□□□□□ -0.43
DDX41-209ENST00000508279 RIPK4P57078 832 aa12.38□□□□□ -0.43
DDX41-209ENST00000508279 TAF7Q15545 349 aaPredicted RBP12.38□□□□□ -0.43
DDX41-209ENST00000508279 USPL1Q5W0Q7 1092 aa12.38□□□□□ -0.43
DDX41-209ENST00000508279 NLGN1Q8N2Q7 840 aa12.38□□□□□ -0.43
DDX41-209ENST00000508279 PARP3Q9Y6F1 533 aa12.38□□□□□ -0.43
DDX41-209ENST00000508279 COL15A1P39059 1388 aa12.38□□□□□ -0.43
DDX41-209ENST00000508279 PRAMEF22A3QJZ6 481 aa12.37□□□□□ -0.43
DDX41-209ENST00000508279 PIP4K2AP48426 406 aaPredicted RBP12.37□□□□□ -0.43
DDX41-209ENST00000508279 FKBP8Q14318 412 aa12.37□□□□□ -0.43
DDX41-209ENST00000508279 NPM2Q86SE8 214 aaKnown RBP12.37□□□□□ -0.43
DDX41-209ENST00000508279 TEX13AQ9BXU3 409 aaPredicted RBP12.37□□□□□ -0.43
DDX41-209ENST00000508279 ADAMTS8Q9UP79 889 aa12.37□□□□□ -0.43
DDX41-209ENST00000508279 CHD4Q14839 1912 aa12.37□□□□□ -0.43
DDX41-209ENST00000508279 USP42Q9H9J4 1324 aaKnown RBP12.37□□□□□ -0.43
DDX41-209ENST00000508279 A1BGP04217 495 aa12.36□□□□□ -0.43
DDX41-209ENST00000508279 YY1P25490 414 aa12.36□□□□□ -0.43
DDX41-209ENST00000508279 TMPOP42166 694 aaKnown RBP12.36□□□□□ -0.43
DDX41-209ENST00000508279 CD2APQ9Y5K6 639 aa12.36□□□□□ -0.43
DDX41-209ENST00000508279 N4BP2Q86UW6 1770 aaPredicted RBP12.35□□□□□ -0.43
DDX41-209ENST00000508279 ANP32CO43423 234 aa12.35□□□□□ -0.43
DDX41-209ENST00000508279 RUNDC1Q96C34 613 aa12.35□□□□□ -0.43
DDX41-209ENST00000508279 USP16Q9Y5T5 823 aa12.35□□□□□ -0.43
DDX41-209ENST00000508279 KDM3BQ7LBC6 1761 aa12.35□□□□□ -0.43
DDX41-209ENST00000508279 SNRPA1P09661 255 aaKnown RBP12.34□□□□□ -0.43
DDX41-209ENST00000508279 BICDL1Q6ZP65 573 aa12.34□□□□□ -0.43
DDX41-209ENST00000508279 PNISRQ8TF01 805 aaKnown RBP12.34□□□□□ -0.43
DDX41-209ENST00000508279 NARFQ9UHQ1 456 aa12.34□□□□□ -0.43
DDX41-209ENST00000508279 TBC1D2BQ9UPU7 963 aa12.34□□□□□ -0.43
DDX41-209ENST00000508279 LAS1LQ9Y4W2 734 aaKnown RBP12.34□□□□□ -0.43
DDX41-209ENST00000508279 A0A087WZG4 1122 aa12.33□□□□□ -0.44
DDX41-209ENST00000508279 LMOD3Q0VAK6 560 aa12.33□□□□□ -0.44
DDX41-209ENST00000508279 TSPYL4Q9UJ04 414 aa12.33□□□□□ -0.44
DDX41-209ENST00000508279 AFDNP55196 1824 aaKnown RBP12.32□□□□□ -0.44
DDX41-209ENST00000508279 SENP3-EIF4A1A0A087X0R7 540 aa12.32□□□□□ -0.44
DDX41-209ENST00000508279 YBX3P16989 372 aaKnown RBP eCLIP12.32□□□□□ -0.442e-6■□□□□ 9.8
DDX41-209ENST00000508279 EIF5P55010 431 aaKnown RBP12.32□□□□□ -0.44
DDX41-209ENST00000508279 DDR1Q08345 913 aa12.32□□□□□ -0.44
DDX41-209ENST00000508279 CCDC184Q52MB2 194 aa12.32□□□□□ -0.44
DDX41-209ENST00000508279 NGEFQ8N5V2 710 aa12.32□□□□□ -0.44
DDX41-209ENST00000508279 LAMB4A4D0S4 1761 aa12.32□□□□□ -0.44
DDX41-209ENST00000508279 KIF13BQ9NQT8 1826 aa12.32□□□□□ -0.44
DDX41-209ENST00000508279 A0A0G2JLW4 131 aa12.31□□□□□ -0.44
DDX41-209ENST00000508279 IL6STP40189 918 aaPredicted RBP12.31□□□□□ -0.44
DDX41-209ENST00000508279 NFIXQ14938 502 aa12.31□□□□□ -0.44
DDX41-209ENST00000508279 SCN7AQ01118 1682 aa12.3□□□□□ -0.44
DDX41-209ENST00000508279 POLRMTO00411 1230 aaKnown RBP12.3□□□□□ -0.44
DDX41-209ENST00000508279 TM4SF1P30408 202 aa12.3□□□□□ -0.44
DDX41-209ENST00000508279 EIF4A1P60842 406 aaKnown RBP12.3□□□□□ -0.44
DDX41-209ENST00000508279 DZIP3Q86Y13 1208 aaKnown RBP12.3□□□□□ -0.44
DDX41-209ENST00000508279 BCL2L12Q9HB09 334 aa12.3□□□□□ -0.44
DDX41-209ENST00000508279 MRS2Q9HD23 443 aa12.3□□□□□ -0.44
DDX41-209ENST00000508279 GOLGB1Q14789 3259 aaKnown RBP12.3□□□□□ -0.44
DDX41-209ENST00000508279 C10orf71Q711Q0 1435 aa12.29□□□□□ -0.44
DDX41-209ENST00000508279 APAF1O14727 1248 aa12.29□□□□□ -0.44
DDX41-209ENST00000508279 NPHP1O15259 732 aa12.29□□□□□ -0.44
DDX41-209ENST00000508279 GRIN3BO60391 1043 aa12.29□□□□□ -0.44
DDX41-209ENST00000508279 GIGYF1O75420 1035 aaPredicted RBP12.29□□□□□ -0.44
DDX41-209ENST00000508279 DPEP1P16444 411 aa12.29□□□□□ -0.44
DDX41-209ENST00000508279 TBC1D9BQ66K14 1250 aa12.29□□□□□ -0.44
DDX41-209ENST00000508279 KIAA1551Q9HCM1 1747 aa12.28□□□□□ -0.44
DDX41-209ENST00000508279 PXDNLA1KZ92 1463 aa12.28□□□□□ -0.44
DDX41-209ENST00000508279 BCORQ6W2J9 1755 aa12.28□□□□□ -0.44
DDX41-209ENST00000508279 NBPF26B4DH59 902 aa12.28□□□□□ -0.44
DDX41-209ENST00000508279 SERPINB2P05120 415 aa12.28□□□□□ -0.44
DDX41-209ENST00000508279 MYL6BP14649 208 aa12.28□□□□□ -0.44
DDX41-209ENST00000508279 EIF2S2P20042 333 aaKnown RBP12.28□□□□□ -0.44
DDX41-209ENST00000508279 TGFB2P61812 414 aa12.28□□□□□ -0.44
DDX41-209ENST00000508279 NBPF10Q6P3W6 841 aaKnown RBP12.28□□□□□ -0.44
DDX41-209ENST00000508279 NBPF15Q8N660 670 aa12.28□□□□□ -0.44
DDX41-209ENST00000508279 NECTIN2Q92692 538 aa12.28□□□□□ -0.44
DDX41-209ENST00000508279 TRIM35Q9UPQ4 493 aa12.28□□□□□ -0.44
DDX41-209ENST00000508279 BCS1LQ9Y276 419 aa12.28□□□□□ -0.44
DDX41-209ENST00000508279 UTRNP46939 3433 aa12.27□□□□□ -0.44
DDX41-209ENST00000508279 CAMTA2O94983 1202 aa12.27□□□□□ -0.45
DDX41-209ENST00000508279 CHRNA5P30532 468 aa12.27□□□□□ -0.45
DDX41-209ENST00000508279 CCDC24Q8N4L8 307 aa12.27□□□□□ -0.45
DDX41-209ENST00000508279 BRCA1P38398 1863 aaKnown RBP12.26□□□□□ -0.45
DDX41-209ENST00000508279 FAM177BA6PVY3 158 aa12.26□□□□□ -0.45
DDX41-209ENST00000508279 SETDB2Q96T68 719 aa12.26□□□□□ -0.45
DDX41-209ENST00000508279 KRT24Q2M2I5 525 aa12.25□□□□□ -0.45
DDX41-209ENST00000508279 ZNF652Q9Y2D9 606 aa12.25□□□□□ -0.45
DDX41-209ENST00000508279 NRXN2Q9P2S2 1712 aa12.25□□□□□ -0.45
DDX41-209ENST00000508279 NUP98P52948 1817 aa12.25□□□□□ -0.45
DDX41-209ENST00000508279 ANXA1P04083 346 aa12.24□□□□□ -0.45
DDX41-209ENST00000508279 CACNA1SQ13698 1873 aa12.24□□□□□ -0.45
DDX41-209ENST00000508279 KIF6Q6ZMV9 814 aa12.24□□□□□ -0.45
DDX41-209ENST00000508279 CARMIL3Q8ND23 1372 aa12.24□□□□□ -0.45
DDX41-209ENST00000508279 PIM2Q9P1W9 311 aa12.24□□□□□ -0.45
DDX41-209ENST00000508279 ANKRD31Q8N7Z5 1873 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms